data_IYO # _chem_comp.id IYO _chem_comp.name "[9-[2-carboxy-5-[2-[2-[5-(methylsulfonylamino)pentoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H45 N4 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-04-20 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 681.819 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZJ0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IYO N1 N1 N 0 1 N N N 13.090 -13.046 8.535 -10.548 -1.726 0.318 N1 IYO 1 IYO C7 C1 C 0 1 N N N 11.687 -15.295 5.757 -8.094 1.013 -0.601 C7 IYO 2 IYO C8 C2 C 0 1 N N N 12.163 -14.075 6.512 -8.859 0.043 0.302 C8 IYO 3 IYO N2 N2 N 1 1 N N N 12.153 -16.811 -6.492 3.126 -5.715 0.874 N2 IYO 4 IYO C9 C3 C 0 1 N N N 12.625 -14.317 7.944 -9.816 -0.797 -0.547 C9 IYO 5 IYO O1 O1 O 0 1 N N N 15.617 -18.751 2.967 -2.840 4.441 0.910 O1 IYO 6 IYO C1 C4 C 0 1 N N N 17.504 -18.138 1.653 -0.957 4.030 2.369 C1 IYO 7 IYO O5 O2 O 0 1 N N N 21.193 -17.767 -6.018 3.876 1.022 -4.006 O5 IYO 8 IYO C5 C5 C 0 1 N N N 12.453 -17.488 4.875 -6.373 2.823 -0.655 C5 IYO 9 IYO C6 C6 C 0 1 N N N 12.503 -16.518 6.032 -7.138 1.853 0.248 C6 IYO 10 IYO N3 N3 N 0 1 N N N 19.825 -11.252 -7.468 9.904 0.876 0.046 N3 IYO 11 IYO C4 C7 C 0 1 N N N 13.683 -19.434 4.267 -4.713 4.552 -0.613 C4 IYO 12 IYO O4 O3 O 0 1 N N N 14.491 -11.541 9.877 -12.343 -3.281 0.847 O4 IYO 13 IYO C3 C8 C 0 1 N N N 14.242 -19.151 2.924 -3.797 5.331 0.332 C3 IYO 14 IYO O3 O4 O 0 1 N N N 15.358 -13.741 9.231 -12.707 -1.444 -0.769 O3 IYO 15 IYO C2 C9 C 0 1 N N N 16.132 -18.729 1.648 -1.930 5.072 1.814 C2 IYO 16 IYO N N4 N 0 1 N N N 18.065 -18.211 0.307 -0.125 3.511 1.281 N IYO 17 IYO C C10 C 0 1 N N N 17.870 -17.218 -0.565 0.811 2.575 1.535 C IYO 18 IYO O O5 O 0 1 N N N 17.268 -16.185 -0.291 0.965 2.162 2.668 O IYO 19 IYO C10 C11 C 0 1 N N N 13.624 -13.628 11.137 -11.293 -3.553 -1.590 C10 IYO 20 IYO C11 C12 C 0 1 Y N N 18.449 -17.393 -1.927 1.652 2.051 0.436 C11 IYO 21 IYO C12 C13 C 0 1 Y N N 19.614 -18.087 -2.213 1.475 2.527 -0.865 C12 IYO 22 IYO C13 C14 C 0 1 Y N N 20.094 -18.147 -3.507 2.254 2.044 -1.897 C13 IYO 23 IYO C14 C15 C 0 1 Y N N 19.365 -17.606 -4.555 3.225 1.077 -1.647 C14 IYO 24 IYO C15 C16 C 0 1 N N N 19.938 -17.841 -5.929 4.055 0.556 -2.754 C15 IYO 25 IYO C16 C17 C 0 1 Y N N 18.210 -16.841 -4.271 3.410 0.591 -0.336 C16 IYO 26 IYO C17 C18 C 0 1 N N N 17.521 -15.979 -5.282 4.435 -0.433 -0.064 C17 IYO 27 IYO C18 C19 C 0 1 N N N 16.182 -16.186 -5.568 4.080 -1.773 0.173 C18 IYO 28 IYO C19 C20 C 0 1 N N N 15.492 -17.282 -5.059 2.726 -2.172 0.154 C19 IYO 29 IYO C20 C21 C 0 1 N N N 14.149 -17.477 -5.343 2.400 -3.465 0.383 C20 IYO 30 IYO C21 C22 C 0 1 N N N 13.470 -16.592 -6.171 3.449 -4.447 0.649 C21 IYO 31 IYO C22 C23 C 0 1 N N N 11.473 -17.979 -5.967 1.717 -6.104 0.984 C22 IYO 32 IYO C23 C24 C 0 1 N N N 11.466 -15.893 -7.378 4.177 -6.726 1.012 C23 IYO 33 IYO C24 C25 C 0 1 N N N 14.144 -15.483 -6.667 4.803 -4.053 0.668 C24 IYO 34 IYO C25 C26 C 0 1 N N N 15.475 -15.275 -6.355 5.136 -2.750 0.438 C25 IYO 35 IYO C26 C27 C 0 1 Y N N 18.187 -14.769 -5.836 5.862 -0.089 -0.036 C26 IYO 36 IYO C27 C28 C 0 1 Y N N 19.526 -14.439 -5.648 6.277 1.229 -0.269 C27 IYO 37 IYO C28 C29 C 0 1 Y N N 20.068 -13.277 -6.177 7.604 1.539 -0.241 C28 IYO 38 IYO C29 C30 C 0 1 Y N N 17.403 -13.885 -6.586 6.812 -1.094 0.228 C29 IYO 39 IYO C30 C31 C 0 1 Y N N 17.933 -12.720 -7.113 8.159 -0.762 0.252 C30 IYO 40 IYO C31 C32 C 0 1 Y N N 19.285 -12.398 -6.921 8.553 0.548 0.020 C31 IYO 41 IYO C32 C33 C 0 1 N N N 21.235 -10.935 -7.314 10.904 -0.159 0.317 C32 IYO 42 IYO C33 C34 C 0 1 N N N 18.955 -10.148 -7.839 10.327 2.257 -0.199 C33 IYO 43 IYO C34 C35 C 0 1 Y N N 17.767 -16.747 -2.951 2.623 1.088 0.702 C34 IYO 44 IYO O2 O6 O 0 1 N N N 13.652 -18.229 5.011 -5.480 3.608 0.138 O2 IYO 45 IYO O6 O7 O 0 1 N N N 19.211 -17.749 -6.918 4.897 -0.290 -2.535 O6 IYO 46 IYO O7 O8 O 0 1 N N N 16.056 -14.119 -6.838 6.431 -2.369 0.456 O7 IYO 47 IYO S S1 S 0 1 N N N 14.250 -12.933 9.654 -11.901 -2.493 -0.249 S IYO 48 IYO H1 H1 H 0 1 N N N 13.402 -12.489 7.765 -10.237 -1.895 1.221 H1 IYO 49 IYO H2 H2 H 0 1 N N N 11.734 -15.079 4.679 -7.525 0.450 -1.340 H2 IYO 50 IYO H3 H3 H 0 1 N N N 10.645 -15.499 6.045 -8.801 1.669 -1.109 H3 IYO 51 IYO H4 H4 H 0 1 N N N 13.006 -13.641 5.954 -8.153 -0.613 0.811 H4 IYO 52 IYO H5 H5 H 0 1 N N N 11.334 -13.353 6.543 -9.428 0.606 1.041 H5 IYO 53 IYO H6 H6 H 0 1 N N N 11.787 -14.712 8.537 -9.246 -1.361 -1.286 H6 IYO 54 IYO H7 H7 H 0 1 N N N 13.450 -15.045 7.945 -10.522 -0.141 -1.055 H7 IYO 55 IYO H8 H8 H 0 1 N N N 18.144 -18.700 2.349 -0.321 4.492 3.124 H8 IYO 56 IYO H9 H9 H 0 1 N N N 17.450 -17.087 1.972 -1.519 3.211 2.818 H9 IYO 57 IYO H10 H10 H 0 1 N N N 21.439 -17.637 -6.926 4.443 0.651 -4.696 H10 IYO 58 IYO H11 H11 H 0 1 N N N 12.429 -16.953 3.914 -5.804 2.260 -1.394 H11 IYO 59 IYO H12 H12 H 0 1 N N N 11.574 -18.145 4.951 -7.079 3.480 -1.163 H12 IYO 60 IYO H13 H13 H 0 1 N N N 12.111 -17.014 6.932 -7.707 2.417 0.987 H13 IYO 61 IYO H14 H14 H 0 1 N N N 13.548 -16.220 6.203 -6.431 1.197 0.757 H14 IYO 62 IYO H15 H15 H 0 1 N N N 12.663 -19.833 4.166 -5.385 5.244 -1.121 H15 IYO 63 IYO H16 H16 H 0 1 N N N 14.316 -20.171 4.783 -4.109 4.024 -1.351 H16 IYO 64 IYO H17 H17 H 0 1 N N N 13.655 -18.343 2.462 -4.393 5.786 1.123 H17 IYO 65 IYO H18 H18 H 0 1 N N N 14.160 -20.060 2.311 -3.277 6.110 -0.226 H18 IYO 66 IYO H19 H19 H 0 1 N N N 15.474 -18.121 1.009 -1.372 5.846 1.287 H19 IYO 67 IYO H20 H20 H 0 1 N N N 16.178 -19.756 1.256 -2.488 5.522 2.635 H20 IYO 68 IYO H21 H21 H 0 1 N N N 18.600 -19.011 0.036 -0.247 3.841 0.377 H21 IYO 69 IYO H22 H22 H 0 1 N N N 14.391 -13.567 11.923 -10.562 -4.257 -1.193 H22 IYO 70 IYO H23 H23 H 0 1 N N N 12.730 -13.071 11.454 -12.127 -4.102 -2.027 H23 IYO 71 IYO H24 H24 H 0 1 N N N 13.358 -14.681 10.965 -10.824 -2.935 -2.356 H24 IYO 72 IYO H25 H25 H 0 1 N N N 20.150 -18.584 -1.419 0.723 3.277 -1.065 H25 IYO 73 IYO H26 H26 H 0 1 N N N 21.045 -18.619 -3.704 2.111 2.417 -2.900 H26 IYO 74 IYO H27 H27 H 0 1 N N N 16.011 -17.992 -4.433 1.951 -1.445 -0.042 H27 IYO 75 IYO H28 H28 H 0 1 N N N 13.628 -18.322 -4.918 1.364 -3.770 0.369 H28 IYO 76 IYO H29 H29 H 0 1 N N N 12.160 -18.544 -5.320 1.336 -6.372 -0.001 H29 IYO 77 IYO H30 H30 H 0 1 N N N 10.597 -17.661 -5.383 1.628 -6.960 1.654 H30 IYO 78 IYO H31 H31 H 0 1 N N N 11.146 -18.618 -6.800 1.140 -5.269 1.383 H31 IYO 79 IYO H32 H32 H 0 1 N N N 10.427 -16.227 -7.519 4.769 -6.515 1.903 H32 IYO 80 IYO H33 H33 H 0 1 N N N 11.470 -14.885 -6.937 3.724 -7.712 1.103 H33 IYO 81 IYO H34 H34 H 0 1 N N N 11.979 -15.870 -8.351 4.822 -6.702 0.133 H34 IYO 82 IYO H35 H35 H 0 1 N N N 13.625 -14.779 -7.300 5.576 -4.781 0.865 H35 IYO 83 IYO H36 H36 H 0 1 N N N 20.158 -15.103 -5.077 5.547 1.998 -0.471 H36 IYO 84 IYO H37 H37 H 0 1 N N N 21.111 -13.051 -6.010 7.923 2.555 -0.421 H37 IYO 85 IYO H38 H38 H 0 1 N N N 17.299 -12.052 -7.678 8.899 -1.522 0.453 H38 IYO 86 IYO H39 H39 H 0 1 N N N 21.787 -11.844 -7.034 11.220 -0.615 -0.621 H39 IYO 87 IYO H40 H40 H 0 1 N N N 21.629 -10.545 -8.264 11.766 0.289 0.812 H40 IYO 88 IYO H41 H41 H 0 1 N N N 21.356 -10.176 -6.527 10.471 -0.922 0.964 H41 IYO 89 IYO H42 H42 H 0 1 N N N 17.920 -10.509 -7.925 10.499 2.401 -1.265 H42 IYO 90 IYO H43 H43 H 0 1 N N N 19.007 -9.365 -7.068 9.548 2.941 0.139 H43 IYO 91 IYO H44 H44 H 0 1 N N N 19.280 -9.734 -8.805 11.248 2.457 0.348 H44 IYO 92 IYO H45 H45 H 0 1 N N N 16.885 -16.166 -2.723 2.759 0.721 1.708 H45 IYO 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IYO C33 N3 SING N N 1 IYO N3 C32 SING N N 2 IYO N3 C31 SING N N 3 IYO C23 N2 SING N N 4 IYO C30 C31 DOUB Y N 5 IYO C30 C29 SING Y N 6 IYO C31 C28 SING Y N 7 IYO O6 C15 DOUB N N 8 IYO O7 C29 SING N N 9 IYO O7 C25 SING N N 10 IYO C24 C25 DOUB N N 11 IYO C24 C21 SING N N 12 IYO C29 C26 DOUB Y N 13 IYO N2 C21 DOUB N N 14 IYO N2 C22 SING N N 15 IYO C25 C18 SING N N 16 IYO C28 C27 DOUB Y N 17 IYO C21 C20 SING N N 18 IYO O5 C15 SING N N 19 IYO C15 C14 SING N N 20 IYO C26 C27 SING Y N 21 IYO C26 C17 SING N N 22 IYO C18 C17 DOUB N N 23 IYO C18 C19 SING N N 24 IYO C20 C19 DOUB N N 25 IYO C17 C16 SING N N 26 IYO C14 C16 DOUB Y N 27 IYO C14 C13 SING Y N 28 IYO C16 C34 SING Y N 29 IYO C13 C12 DOUB Y N 30 IYO C34 C11 DOUB Y N 31 IYO C12 C11 SING Y N 32 IYO C11 C SING N N 33 IYO C O DOUB N N 34 IYO C N SING N N 35 IYO N C1 SING N N 36 IYO C2 C1 SING N N 37 IYO C2 O1 SING N N 38 IYO C3 O1 SING N N 39 IYO C3 C4 SING N N 40 IYO C4 O2 SING N N 41 IYO C5 O2 SING N N 42 IYO C5 C6 SING N N 43 IYO C7 C6 SING N N 44 IYO C7 C8 SING N N 45 IYO C8 C9 SING N N 46 IYO C9 N1 SING N N 47 IYO N1 S SING N N 48 IYO O3 S DOUB N N 49 IYO S O4 DOUB N N 50 IYO S C10 SING N N 51 IYO N1 H1 SING N N 52 IYO C7 H2 SING N N 53 IYO C7 H3 SING N N 54 IYO C8 H4 SING N N 55 IYO C8 H5 SING N N 56 IYO C9 H6 SING N N 57 IYO C9 H7 SING N N 58 IYO C1 H8 SING N N 59 IYO C1 H9 SING N N 60 IYO O5 H10 SING N N 61 IYO C5 H11 SING N N 62 IYO C5 H12 SING N N 63 IYO C6 H13 SING N N 64 IYO C6 H14 SING N N 65 IYO C4 H15 SING N N 66 IYO C4 H16 SING N N 67 IYO C3 H17 SING N N 68 IYO C3 H18 SING N N 69 IYO C2 H19 SING N N 70 IYO C2 H20 SING N N 71 IYO N H21 SING N N 72 IYO C10 H22 SING N N 73 IYO C10 H23 SING N N 74 IYO C10 H24 SING N N 75 IYO C12 H25 SING N N 76 IYO C13 H26 SING N N 77 IYO C19 H27 SING N N 78 IYO C20 H28 SING N N 79 IYO C22 H29 SING N N 80 IYO C22 H30 SING N N 81 IYO C22 H31 SING N N 82 IYO C23 H32 SING N N 83 IYO C23 H33 SING N N 84 IYO C23 H34 SING N N 85 IYO C24 H35 SING N N 86 IYO C27 H36 SING N N 87 IYO C28 H37 SING N N 88 IYO C30 H38 SING N N 89 IYO C32 H39 SING N N 90 IYO C32 H40 SING N N 91 IYO C32 H41 SING N N 92 IYO C33 H42 SING N N 93 IYO C33 H43 SING N N 94 IYO C33 H44 SING N N 95 IYO C34 H45 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IYO InChI InChI 1.06 "InChI=1S/C35H44N4O8S/c1-38(2)25-10-13-28-31(22-25)47-32-23-26(39(3)4)11-14-29(32)33(28)30-21-24(9-12-27(30)35(41)42)34(40)36-16-18-46-20-19-45-17-8-6-7-15-37-48(5,43)44/h9-14,21-23,37H,6-8,15-20H2,1-5H3,(H-,36,40,41,42)/p+1" IYO InChIKey InChI 1.06 AKUULRQTVFOLNZ-UHFFFAOYSA-O IYO SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4cc(ccc4C(O)=O)C(=O)NCCOCCOCCCCCN[S](C)(=O)=O)=[N+](C)C)c1" IYO SMILES CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4cc(ccc4C(O)=O)C(=O)NCCOCCOCCCCCN[S](C)(=O)=O)=[N+](C)C)c1" IYO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCNS(=O)(=O)C" IYO SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCNS(=O)(=O)C" # _pdbx_chem_comp_identifier.comp_id IYO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[9-[2-carboxy-5-[2-[2-[5-(methylsulfonylamino)pentoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IYO "Create component" 2022-04-20 PDBE IYO "Modify descriptor" 2022-08-22 RCSB IYO "Initial release" 2023-02-22 RCSB #