data_IZU # _chem_comp.id IZU _chem_comp.name "[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]methyl-[(3~{S},6~{E},10~{Z},14~{E})-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraenoxy]phosphinic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H57 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-22 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 600.764 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IZU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZLJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IZU C10 C1 C 0 1 N N N 118.260 131.373 137.235 -7.771 -1.910 1.017 C10 IZU 1 IZU C13 C2 C 0 1 N N N 115.635 132.617 136.659 -10.772 -0.547 0.504 C13 IZU 2 IZU C15 C3 C 0 1 N N N 116.784 136.189 138.462 -7.587 1.540 0.984 C15 IZU 3 IZU C17 C4 C 0 1 N N N 118.040 137.816 136.816 -5.913 3.190 0.196 C17 IZU 4 IZU C20 C5 C 0 1 N N N 120.266 139.067 136.566 -3.641 3.300 -0.692 C20 IZU 5 IZU C21 C6 C 0 1 N N N 120.494 140.604 136.491 -2.664 2.129 -0.578 C21 IZU 6 IZU C22 C7 C 0 1 N N S 121.895 141.023 135.912 -1.229 2.660 -0.567 C22 IZU 7 IZU C24 C8 C 0 1 N N N 121.905 142.534 135.538 -0.258 1.503 -0.327 C24 IZU 8 IZU C01 C9 C 0 1 N N N 121.332 123.733 134.499 -3.026 -2.814 -3.163 C01 IZU 9 IZU C02 C10 C 0 1 N N N 120.500 124.804 135.255 -2.233 -3.733 -2.270 C02 IZU 10 IZU C03 C11 C 0 1 N N N 120.383 124.708 136.810 -1.216 -4.671 -2.867 C03 IZU 11 IZU C04 C12 C 0 1 N N N 119.940 125.781 134.450 -2.428 -3.717 -0.975 C04 IZU 12 IZU C05 C13 C 0 1 N N N 119.077 126.872 135.257 -3.525 -2.866 -0.388 C05 IZU 13 IZU C06 C14 C 0 1 N N N 118.728 128.233 134.532 -4.436 -3.737 0.481 C06 IZU 14 IZU C07 C15 C 0 1 N N N 117.695 129.146 135.343 -5.533 -2.886 1.067 C07 IZU 15 IZU C08 C16 C 0 1 N N N 116.243 128.644 134.915 -5.292 -2.119 2.341 C08 IZU 16 IZU C09 C17 C 0 1 N N N 118.145 130.133 136.206 -6.696 -2.814 0.469 C09 IZU 17 IZU C11 C18 C 0 1 N N N 118.118 132.778 136.517 -8.267 -0.978 -0.090 C11 IZU 18 IZU C12 C19 C 0 1 N N N 116.855 133.560 137.039 -9.341 -0.075 0.458 C12 IZU 19 IZU C14 C20 C 0 1 N N N 116.683 134.752 137.734 -9.032 1.121 0.894 C14 IZU 20 IZU C16 C21 C 0 1 N N N 116.693 137.508 137.556 -7.358 2.772 0.106 C16 IZU 21 IZU C18 C22 C 0 1 N N N 118.189 136.908 135.548 -5.456 4.085 1.319 C18 IZU 22 IZU C19 C23 C 0 1 N N N 118.914 138.745 137.255 -5.054 2.777 -0.703 C19 IZU 23 IZU C23 C24 C 0 1 N N N 122.991 140.682 136.948 -0.918 3.317 -1.913 C23 IZU 24 IZU C25 C25 C 0 1 N N N 121.189 142.950 134.177 1.164 2.050 -0.192 C25 IZU 25 IZU C30 C26 C 0 1 N N N 118.048 145.400 135.404 4.436 -0.419 0.628 C30 IZU 26 IZU C31 C27 C 0 1 N N R 118.830 145.514 136.727 5.920 -0.199 0.930 C31 IZU 27 IZU C33 C28 C 0 1 N N R 121.211 145.956 137.264 7.978 0.516 -0.072 C33 IZU 28 IZU C34 C29 C 0 1 N N N 122.570 145.938 136.553 8.576 1.020 -1.387 C34 IZU 29 IZU C36 C30 C 0 1 N N S 121.078 145.017 138.480 8.688 -0.773 0.351 C36 IZU 30 IZU C38 C31 C 0 1 N N S 119.648 144.679 138.915 8.045 -1.303 1.635 C38 IZU 31 IZU C40 C32 C 0 1 N N S 118.651 144.433 137.798 6.547 -1.517 1.393 C40 IZU 32 IZU O26 O1 O 0 1 N N N 119.786 143.293 134.303 2.072 0.968 0.031 O26 IZU 33 IZU O28 O2 O 0 1 N N N 120.052 145.791 133.450 4.289 1.751 -1.145 O28 IZU 34 IZU O29 O3 O 0 1 N N N 118.121 144.676 132.789 3.899 2.140 1.319 O29 IZU 35 IZU O32 O4 O 0 1 N N N 120.230 145.540 136.287 6.585 0.254 -0.251 O32 IZU 36 IZU O35 O5 O 0 1 N N N 123.651 145.779 137.443 7.995 2.282 -1.721 O35 IZU 37 IZU O37 O6 O 0 1 N N N 121.832 145.636 139.558 10.071 -0.501 0.586 O37 IZU 38 IZU O39 O7 O 0 1 N N N 119.647 143.504 139.815 8.652 -2.545 1.997 O39 IZU 39 IZU O41 O8 O 0 1 N N N 118.813 143.142 137.172 6.364 -2.513 0.385 O41 IZU 40 IZU P27 P1 P 0 1 N N N 119.067 144.762 133.936 3.657 1.178 0.221 P27 IZU 41 IZU H101 H1 H 0 0 N N N 117.464 131.280 137.988 -8.601 -2.514 1.383 H101 IZU 42 IZU H102 H2 H 0 0 N N N 119.241 131.329 137.731 -7.364 -1.317 1.836 H102 IZU 43 IZU H132 H3 H 0 0 N N N 114.694 133.083 136.987 -10.960 -1.045 1.456 H132 IZU 44 IZU H131 H4 H 0 0 N N N 115.611 132.471 135.569 -11.440 0.308 0.403 H131 IZU 45 IZU H133 H5 H 0 0 N N N 115.755 131.644 137.157 -10.950 -1.246 -0.313 H133 IZU 46 IZU H151 H6 H 0 0 N N N 117.750 136.221 138.987 -7.342 1.780 2.018 H151 IZU 47 IZU H152 H7 H 0 0 N N N 115.966 136.241 139.195 -6.951 0.725 0.640 H152 IZU 48 IZU H202 H8 H 0 0 N N N 120.259 138.653 135.547 -3.508 3.969 0.159 H202 IZU 49 IZU H201 H9 H 0 0 N N N 121.083 138.609 137.143 -3.448 3.846 -1.616 H201 IZU 50 IZU H212 H10 H 0 0 N N N 120.404 141.016 137.507 -2.856 1.584 0.346 H212 IZU 51 IZU H211 H11 H 0 0 N N N 119.713 141.037 135.849 -2.797 1.461 -1.429 H211 IZU 52 IZU H221 H12 H 0 0 N N N 122.080 140.437 135.000 -1.120 3.396 0.230 H221 IZU 53 IZU H241 H13 H 0 0 N N N 122.956 142.851 135.470 -0.535 0.979 0.588 H241 IZU 54 IZU H242 H14 H 0 0 N N N 121.409 143.080 136.354 -0.303 0.811 -1.169 H242 IZU 55 IZU H012 H15 H 0 0 N N N 121.734 123.005 135.219 -2.753 -2.993 -4.203 H012 IZU 56 IZU H011 H16 H 0 0 N N N 120.689 123.214 133.773 -4.090 -3.006 -3.028 H011 IZU 57 IZU H013 H17 H 0 0 N N N 122.163 124.221 133.969 -2.808 -1.778 -2.903 H013 IZU 58 IZU H031 H18 H 0 0 N N N 120.933 123.824 137.166 -0.246 -4.175 -2.911 H031 IZU 59 IZU H032 H19 H 0 0 N N N 120.810 125.613 137.266 -1.139 -5.565 -2.249 H032 IZU 60 IZU H033 H20 H 0 0 N N N 119.324 124.619 137.093 -1.526 -4.951 -3.874 H033 IZU 61 IZU H041 H21 H 0 0 N N N 120.071 125.808 133.378 -1.802 -4.313 -0.327 H041 IZU 62 IZU H051 H22 H 0 0 N N N 118.125 126.396 135.533 -3.086 -2.077 0.222 H051 IZU 63 IZU H052 H23 H 0 0 N N N 119.639 127.123 136.169 -4.109 -2.421 -1.194 H052 IZU 64 IZU H062 H24 H 0 0 N N N 119.659 128.801 134.393 -4.875 -4.526 -0.130 H062 IZU 65 IZU H061 H25 H 0 0 N N N 118.290 128.001 133.550 -3.852 -4.182 1.286 H061 IZU 66 IZU H081 H27 H 0 0 N N N 115.480 129.236 135.442 -4.976 -1.104 2.100 H081 IZU 67 IZU H082 H28 H 0 0 N N N 116.118 128.767 133.829 -6.213 -2.084 2.924 H082 IZU 68 IZU H083 H29 H 0 0 N N N 116.130 127.582 135.179 -4.513 -2.613 2.922 H083 IZU 69 IZU H2 H30 H 0 1 N N N 119.198 129.902 136.146 -6.885 -3.402 -0.417 H2 IZU 70 IZU H111 H32 H 0 0 N N N 118.018 132.618 135.433 -7.437 -0.375 -0.456 H111 IZU 71 IZU H112 H33 H 0 0 N N N 119.019 133.376 136.718 -8.674 -1.571 -0.909 H112 IZU 72 IZU H4 H35 H 0 1 N N N 115.653 134.569 138.004 -9.812 1.807 1.189 H4 IZU 73 IZU H162 H37 H 0 0 N N N 116.440 138.363 138.200 -7.603 2.531 -0.929 H162 IZU 74 IZU H161 H38 H 0 0 N N N 115.901 137.368 136.805 -7.994 3.587 0.450 H161 IZU 75 IZU H181 H39 H 0 0 N N N 117.309 136.254 135.460 -5.445 5.120 0.978 H181 IZU 76 IZU H182 H40 H 0 0 N N N 118.267 137.540 134.651 -6.140 3.987 2.162 H182 IZU 77 IZU H183 H41 H 0 0 N N N 119.096 136.292 135.642 -4.452 3.794 1.630 H183 IZU 78 IZU H191 H42 H 0 0 N N N 118.656 139.301 138.144 -5.359 2.061 -1.452 H191 IZU 79 IZU H231 H43 H 0 0 N N N 122.951 139.609 137.185 -1.027 2.582 -2.710 H231 IZU 80 IZU H233 H44 H 0 0 N N N 123.979 140.929 136.531 -1.610 4.142 -2.083 H233 IZU 81 IZU H232 H45 H 0 0 N N N 122.823 141.266 137.865 0.104 3.696 -1.905 H232 IZU 82 IZU H252 H46 H 0 0 N N N 121.272 142.107 133.476 1.441 2.573 -1.107 H252 IZU 83 IZU H251 H47 H 0 0 N N N 121.718 143.822 133.766 1.209 2.741 0.650 H251 IZU 84 IZU H302 H48 H 0 0 N N N 117.663 146.398 135.146 4.334 -1.099 -0.217 H302 IZU 85 IZU H301 H49 H 0 0 N N N 117.205 144.711 135.562 3.947 -0.849 1.502 H301 IZU 86 IZU H311 H50 H 0 0 N N N 118.584 146.485 137.181 6.024 0.549 1.716 H311 IZU 87 IZU H331 H51 H 0 0 N N N 120.999 146.985 137.591 8.109 1.273 0.701 H331 IZU 88 IZU H341 H52 H 0 0 N N N 122.580 145.104 135.836 9.654 1.134 -1.276 H341 IZU 89 IZU H342 H53 H 0 0 N N N 122.696 146.888 136.013 8.366 0.302 -2.180 H342 IZU 90 IZU H361 H54 H 0 0 N N N 121.571 144.070 138.214 8.592 -1.518 -0.439 H361 IZU 91 IZU H381 H55 H 0 0 N N N 119.279 145.539 139.493 8.186 -0.581 2.439 H381 IZU 92 IZU H401 H56 H 0 0 N N N 117.635 144.518 138.210 6.071 -1.842 2.318 H401 IZU 93 IZU H5 H57 H 0 1 N N N 119.802 146.084 132.582 4.167 1.171 -1.908 H5 IZU 94 IZU H351 H58 H 0 0 N N N 124.466 145.774 136.955 8.328 2.662 -2.546 H351 IZU 95 IZU H371 H59 H 0 0 N N N 121.780 145.091 140.335 10.541 -0.157 -0.185 H371 IZU 96 IZU H391 H60 H 0 0 N N N 120.268 143.644 140.520 9.604 -2.485 2.159 H391 IZU 97 IZU H411 H61 H 0 0 N N N 118.705 142.458 137.823 6.738 -3.375 0.612 H411 IZU 98 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IZU O29 P27 DOUB N N 1 IZU O28 P27 SING N N 2 IZU P27 O26 SING N N 3 IZU P27 C30 SING N N 4 IZU C25 O26 SING N N 5 IZU C25 C24 SING N N 6 IZU C04 C02 DOUB N N 7 IZU C04 C05 SING N N 8 IZU C01 C02 SING N N 9 IZU C06 C05 SING N N 10 IZU C06 C07 SING N N 11 IZU C08 C07 SING N N 12 IZU C02 C03 SING N N 13 IZU C07 C09 DOUB N E 14 IZU C30 C31 SING N N 15 IZU C24 C22 SING N N 16 IZU C18 C17 SING N N 17 IZU C22 C21 SING N N 18 IZU C22 C23 SING N N 19 IZU C09 C10 SING N N 20 IZU O32 C31 SING N N 21 IZU O32 C33 SING N N 22 IZU C21 C20 SING N N 23 IZU C11 C12 SING N N 24 IZU C11 C10 SING N N 25 IZU C34 C33 SING N N 26 IZU C34 O35 SING N N 27 IZU C20 C19 SING N N 28 IZU C13 C12 SING N N 29 IZU C31 C40 SING N N 30 IZU C17 C19 DOUB N E 31 IZU C17 C16 SING N N 32 IZU C12 C14 DOUB N Z 33 IZU O41 C40 SING N N 34 IZU C33 C36 SING N N 35 IZU C16 C15 SING N N 36 IZU C14 C15 SING N N 37 IZU C40 C38 SING N N 38 IZU C36 C38 SING N N 39 IZU C36 O37 SING N N 40 IZU C38 O39 SING N N 41 IZU C10 H101 SING N N 42 IZU C10 H102 SING N N 43 IZU C13 H132 SING N N 44 IZU C13 H131 SING N N 45 IZU C13 H133 SING N N 46 IZU C15 H151 SING N N 47 IZU C15 H152 SING N N 48 IZU C20 H202 SING N N 49 IZU C20 H201 SING N N 50 IZU C21 H212 SING N N 51 IZU C21 H211 SING N N 52 IZU C22 H221 SING N N 53 IZU C24 H241 SING N N 54 IZU C24 H242 SING N N 55 IZU C01 H012 SING N N 56 IZU C01 H011 SING N N 57 IZU C01 H013 SING N N 58 IZU C03 H031 SING N N 59 IZU C03 H032 SING N N 60 IZU C03 H033 SING N N 61 IZU C04 H041 SING N N 62 IZU C05 H051 SING N N 63 IZU C05 H052 SING N N 64 IZU C06 H062 SING N N 65 IZU C06 H061 SING N N 66 IZU C08 H081 SING N N 67 IZU C08 H082 SING N N 68 IZU C08 H083 SING N N 69 IZU C09 H2 SING N N 70 IZU C11 H111 SING N N 71 IZU C11 H112 SING N N 72 IZU C14 H4 SING N N 73 IZU C16 H162 SING N N 74 IZU C16 H161 SING N N 75 IZU C18 H181 SING N N 76 IZU C18 H182 SING N N 77 IZU C18 H183 SING N N 78 IZU C19 H191 SING N N 79 IZU C23 H231 SING N N 80 IZU C23 H233 SING N N 81 IZU C23 H232 SING N N 82 IZU C25 H252 SING N N 83 IZU C25 H251 SING N N 84 IZU C30 H302 SING N N 85 IZU C30 H301 SING N N 86 IZU C31 H311 SING N N 87 IZU C33 H331 SING N N 88 IZU C34 H341 SING N N 89 IZU C34 H342 SING N N 90 IZU C36 H361 SING N N 91 IZU C38 H381 SING N N 92 IZU C40 H401 SING N N 93 IZU O28 H5 SING N N 94 IZU O35 H351 SING N N 95 IZU O37 H371 SING N N 96 IZU O39 H391 SING N N 97 IZU O41 H411 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IZU InChI InChI 1.06 "InChI=1S/C32H57O8P/c1-23(2)11-7-12-24(3)13-8-14-25(4)15-9-16-26(5)17-10-18-27(6)19-20-39-41(37,38)22-29-31(35)32(36)30(34)28(21-33)40-29/h11,13,15,17,27-36H,7-10,12,14,16,18-22H2,1-6H3,(H,37,38)/b24-13+,25-15-,26-17+/t27-,28+,29-,30+,31+,32-/m0/s1" IZU InChIKey InChI 1.06 MNRXJRFNBXECBJ-QWFISOLMSA-N IZU SMILES_CANONICAL CACTVS 3.385 "C[C@H](CCO[P](O)(=O)C[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O)CC/C=C(C)/CC/C=C(/C)CC/C=C(C)/CCC=C(C)C" IZU SMILES CACTVS 3.385 "C[CH](CCO[P](O)(=O)C[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)CCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C" IZU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](CC/C=C(\C)/CC/C=C(/C)\CC/C=C(\C)/CCC=C(C)C)CCOP(=O)(C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)O" IZU SMILES "OpenEye OEToolkits" 2.0.7 "CC(CCC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C)CCOP(=O)(CC1C(C(C(C(O1)CO)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id IZU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]methyl-[(3~{S},6~{E},10~{Z},14~{E})-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraenoxy]phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IZU "Create component" 2022-04-22 PDBE IZU "Modify descriptor" 2022-08-22 RCSB IZU "Initial release" 2023-01-11 RCSB #