data_J00
#
_chem_comp.id J00
_chem_comp.name "2-[(3S)-1-oxidanyl-3H-2,1-benzoxaborol-3-yl]prop-2-enoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H9 B O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(S)-2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acrylic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-03-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 203.987
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J00
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7E9A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J00 C1 C1 C 0 1 Y N N N N N 90.934 1.904 220.170 3.006 1.265 -0.692 C1 J00 1
J00 C2 C2 C 0 1 Y N N N N N 90.234 1.784 219.008 2.205 2.254 -0.149 C2 J00 2
J00 C3 C3 C 0 1 Y N N N N N 90.629 2.431 217.855 1.027 1.924 0.500 C3 J00 3
J00 C4 C4 C 0 1 Y N N N N N 91.770 3.258 217.858 0.644 0.603 0.608 C4 J00 4
J00 C5 C5 C 0 1 Y N N N N N 92.457 3.347 218.995 1.450 -0.396 0.061 C5 J00 5
J00 C6 C6 C 0 1 Y N N N N N 92.047 2.689 220.177 2.632 -0.061 -0.590 C6 J00 6
J00 B7 B1 B 0 1 N N N N N N 93.624 4.330 218.767 0.739 -1.765 0.353 B7 J00 7
J00 O8 O1 O 0 1 N N N N N N 93.635 4.621 217.381 -0.456 -1.472 1.064 O8 J00 8
J00 C9 C7 C 0 1 N N S N N N 92.470 4.067 216.755 -0.551 -0.059 1.238 C9 J00 9
J00 C10 C8 C 0 1 N N N N N N 91.753 5.181 216.087 -1.810 0.445 0.581 C10 J00 10
J00 C11 C9 C 0 1 N N N N N N 90.460 5.403 216.206 -2.677 1.177 1.277 C11 J00 11
J00 C12 C10 C 0 1 N N N N N N 92.595 6.095 215.196 -2.081 0.129 -0.828 C12 J00 12
J00 O13 O2 O 0 1 N N N N N N 92.427 7.337 215.189 -1.203 -0.612 -1.533 O13 J00 13
J00 O14 O3 O 0 1 N N N N N N 93.472 5.588 214.455 -3.096 0.535 -1.358 O14 J00 14
J00 O15 O4 O 0 1 N N N N N N 93.999 5.455 219.438 1.203 -3.054 -0.023 O15 J00 15
J00 H1 H1 H 0 1 N N N N N N 90.614 1.389 221.064 3.921 1.530 -1.200 H1 J00 16
J00 H2 H2 H 0 1 N N N N N N 89.348 1.167 218.988 2.501 3.289 -0.230 H2 J00 17
J00 H3 H3 H 0 1 N N N N N N 90.061 2.303 216.946 0.408 2.702 0.922 H3 J00 18
J00 H4 H4 H 0 1 N N N N N N 92.617 2.809 221.087 3.253 -0.834 -1.017 H4 J00 19
J00 H5 H5 H 0 1 N N N N N N 92.791 3.356 215.980 -0.578 0.175 2.302 H5 J00 20
J00 H6 H6 H 0 1 N N N N N N 89.855 4.753 216.820 -3.579 1.538 0.806 H6 J00 21
J00 H7 H7 H 0 1 N N N N N N 90.005 6.235 215.689 -2.478 1.410 2.313 H7 J00 22
J00 H8 H8 H 0 1 N N N N N N 93.035 7.736 214.578 -1.424 -0.794 -2.457 H8 J00 23
J00 H9 H9 H 0 1 N N N N N N 94.174 6.152 218.816 0.621 -3.776 0.250 H9 J00 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J00 O14 C12 DOUB N N 1
J00 O13 C12 SING N N 2
J00 C12 C10 SING N N 3
J00 C10 C11 DOUB N N 4
J00 C10 C9 SING N N 5
J00 C9 O8 SING N N 6
J00 C9 C4 SING N N 7
J00 O8 B7 SING N N 8
J00 C3 C4 DOUB Y N 9
J00 C3 C2 SING Y N 10
J00 C4 C5 SING Y N 11
J00 B7 C5 SING N N 12
J00 B7 O15 SING N N 13
J00 C5 C6 DOUB Y N 14
J00 C2 C1 DOUB Y N 15
J00 C1 C6 SING Y N 16
J00 C1 H1 SING N N 17
J00 C2 H2 SING N N 18
J00 C3 H3 SING N N 19
J00 C6 H4 SING N N 20
J00 C9 H5 SING N N 21
J00 C11 H6 SING N N 22
J00 C11 H7 SING N N 23
J00 O13 H8 SING N N 24
J00 O15 H9 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J00 InChI InChI 1.03 "InChI=1S/C10H9BO4/c1-6(10(12)13)9-7-4-2-3-5-8(7)11(14)15-9/h2-5,9,14H,1H2,(H,12,13)/t9-/m1/s1"
J00 InChIKey InChI 1.03 BRBGRVSFRVLGNY-SECBINFHSA-N
J00 SMILES_CANONICAL CACTVS 3.385 "OB1O[C@H](C(=C)C(O)=O)c2ccccc12"
J00 SMILES CACTVS 3.385 "OB1O[CH](C(=C)C(O)=O)c2ccccc12"
J00 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B1(c2ccccc2[C@H](O1)C(=C)C(=O)O)O"
J00 SMILES "OpenEye OEToolkits" 2.0.7 "B1(c2ccccc2C(O1)C(=C)C(=O)O)O"
#
_pdbx_chem_comp_identifier.comp_id J00
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[(3~{S})-1-oxidanyl-3~{H}-2,1-benzoxaborol-3-yl]prop-2-enoic acid"
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id J00
_pdbx_chem_comp_synonyms.name "(S)-2-(1-hydroxy-1,3-dihydrobenzo[c][1,2]oxaborol-3-yl)acrylic acid"
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J00 "Create component" 2021-03-08 PDBJ
J00 "Initial release" 2021-08-04 RCSB
J00 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id J00
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom B7
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#