data_J08 # _chem_comp.id J08 _chem_comp.name "4-[(5-phenyl-1~{H}-imidazol-2-yl)methylamino]-2-(pyridin-3-ylmethoxy)benzenecarboximidamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H22 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-01-10 _chem_comp.pdbx_modified_date 2019-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.460 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J08 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6QFE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J08 C10 C1 C 0 1 Y N N -4.726 -16.796 68.572 -3.297 1.092 -0.745 C10 J08 1 J08 C13 C2 C 0 1 Y N N -3.516 -18.152 69.713 -4.903 0.130 -1.821 C13 J08 2 J08 C15 C3 C 0 1 Y N N -4.495 -17.676 72.047 -6.360 -0.669 0.098 C15 J08 3 J08 C17 C4 C 0 1 Y N N -5.671 -17.222 74.114 -7.617 -1.338 2.033 C17 J08 4 J08 C20 C5 C 0 1 Y N N -3.669 -18.562 72.739 -7.323 -1.256 -0.725 C20 J08 5 J08 C21 C6 C 0 1 Y N N -3.137 -14.965 65.924 1.458 0.475 -0.178 C21 J08 6 J08 C22 C7 C 0 1 Y N N -2.150 -14.378 65.141 2.740 0.933 0.068 C22 J08 7 J08 C24 C8 C 0 1 N N N -1.496 -12.781 66.868 3.484 -1.312 -0.166 C24 J08 8 J08 C26 C9 C 0 1 Y N N -3.384 -11.914 68.298 5.184 -2.672 1.086 C26 J08 9 J08 C28 C10 C 0 1 Y N N -4.954 -10.388 67.379 7.055 -3.571 -0.094 C28 J08 10 J08 N01 N1 N 0 1 N N N -0.425 -13.068 63.022 4.558 4.147 0.677 N01 J08 11 J08 C02 C11 C 0 1 N N N -0.831 -14.357 62.950 4.325 2.793 0.568 C02 J08 12 J08 N03 N2 N 0 1 N N N -0.352 -15.101 62.000 5.312 1.949 0.697 N03 J08 13 J08 C04 C12 C 0 1 Y N N -1.836 -14.899 63.868 2.960 2.297 0.304 C04 J08 14 J08 C05 C13 C 0 1 Y N N -2.566 -16.003 63.412 1.883 3.186 0.289 C05 J08 15 J08 C06 C14 C 0 1 Y N N -3.568 -16.567 64.176 0.610 2.721 0.043 C06 J08 16 J08 C07 C15 C 0 1 Y N N -3.877 -16.046 65.424 0.394 1.367 -0.197 C07 J08 17 J08 N08 N3 N 0 1 N N N -4.906 -16.613 66.148 -0.896 0.904 -0.445 N08 J08 18 J08 C09 C16 C 0 1 N N N -5.369 -16.093 67.424 -2.022 1.841 -0.454 C09 J08 19 J08 N11 N4 N 0 1 Y N N -5.141 -16.668 69.851 -4.157 0.618 0.182 N11 J08 20 J08 C12 C17 C 0 1 Y N N -4.347 -17.497 70.590 -5.185 0.002 -0.496 C12 J08 21 J08 N14 N5 N 0 1 Y N N -3.758 -17.695 68.440 -3.751 0.801 -1.934 N14 J08 22 J08 C16 C18 C 0 1 Y N N -5.501 -17.008 72.751 -6.515 -0.715 1.484 C16 J08 23 J08 C18 C19 C 0 1 Y N N -4.818 -18.069 74.796 -8.568 -1.918 1.211 C18 J08 24 J08 C19 C20 C 0 1 Y N N -3.839 -18.763 74.104 -8.420 -1.876 -0.164 C19 J08 25 J08 O23 O1 O 0 1 N N N -1.410 -13.289 65.532 3.782 0.063 0.082 O23 J08 26 J08 C25 C21 C 0 1 Y N N -2.730 -11.950 67.070 4.754 -2.120 -0.111 C25 J08 27 J08 C27 C22 C 0 1 Y N N -4.502 -11.112 68.462 6.359 -3.409 1.089 C27 J08 28 J08 N29 N6 N 0 1 Y N N -4.375 -10.438 66.167 6.619 -3.026 -1.213 N29 J08 29 J08 C30 C23 C 0 1 Y N N -3.270 -11.193 66.044 5.506 -2.320 -1.253 C30 J08 30 J08 H1 H1 H 0 1 N N N -2.790 -18.905 69.981 -5.505 -0.242 -2.638 H1 J08 31 J08 H2 H2 H 0 1 N N N -6.472 -16.725 74.641 -7.738 -1.374 3.105 H2 J08 32 J08 H3 H3 H 0 1 N N N -2.892 -19.095 72.211 -7.209 -1.224 -1.798 H3 J08 33 J08 H4 H4 H 0 1 N N N -3.334 -14.589 66.917 1.286 -0.576 -0.361 H4 J08 34 J08 H5 H5 H 0 1 N N N -1.518 -13.628 67.570 2.789 -1.675 0.592 H5 J08 35 J08 H6 H6 H 0 1 N N N -0.611 -12.160 67.070 3.031 -1.413 -1.152 H6 J08 36 J08 H7 H7 H 0 1 N N N -3.021 -12.510 69.122 4.619 -2.529 1.995 H7 J08 37 J08 H8 H8 H 0 1 N N N -5.815 -9.750 67.511 7.971 -4.143 -0.100 H8 J08 38 J08 H9 H9 H 0 1 N N N -0.813 -12.460 63.714 3.824 4.775 0.581 H9 J08 39 J08 H10 H10 H 0 1 N N N 0.263 -12.724 62.383 5.455 4.473 0.850 H10 J08 40 J08 H11 H11 H 0 1 N N N -0.751 -16.018 62.005 5.163 1.002 0.548 H11 J08 41 J08 H12 H12 H 0 1 N N N -2.341 -16.422 62.442 2.048 4.238 0.471 H12 J08 42 J08 H13 H13 H 0 1 N N N -4.115 -17.419 63.800 -0.221 3.410 0.032 H13 J08 43 J08 H14 H14 H 0 1 N N N -5.703 -16.604 65.544 -1.049 -0.039 -0.612 H14 J08 44 J08 H15 H15 H 0 1 N N N -5.127 -15.021 67.481 -1.860 2.596 -1.224 H15 J08 45 J08 H16 H16 H 0 1 N N N -6.459 -16.227 67.489 -2.099 2.326 0.519 H16 J08 46 J08 H17 H17 H 0 1 N N N -5.880 -16.084 70.188 -4.067 0.696 1.145 H17 J08 47 J08 H19 H19 H 0 1 N N N -6.152 -16.320 72.232 -5.773 -0.263 2.127 H19 J08 48 J08 H20 H20 H 0 1 N N N -4.914 -18.189 75.865 -9.428 -2.405 1.645 H20 J08 49 J08 H21 H21 H 0 1 N N N -3.205 -19.463 74.627 -9.166 -2.330 -0.800 H21 J08 50 J08 H22 H22 H 0 1 N N N -5.007 -11.055 69.415 6.726 -3.849 2.004 H22 J08 51 J08 H23 H23 H 0 1 N N N -2.772 -11.210 65.086 5.181 -1.889 -2.189 H23 J08 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J08 N03 C02 DOUB N N 1 J08 C02 N01 SING N N 2 J08 C02 C04 SING N N 3 J08 C05 C04 DOUB Y N 4 J08 C05 C06 SING Y N 5 J08 C04 C22 SING Y N 6 J08 C06 C07 DOUB Y N 7 J08 C22 O23 SING N N 8 J08 C22 C21 DOUB Y N 9 J08 C07 C21 SING Y N 10 J08 C07 N08 SING N N 11 J08 O23 C24 SING N N 12 J08 C30 N29 DOUB Y N 13 J08 C30 C25 SING Y N 14 J08 N08 C09 SING N N 15 J08 N29 C28 SING Y N 16 J08 C24 C25 SING N N 17 J08 C25 C26 DOUB Y N 18 J08 C28 C27 DOUB Y N 19 J08 C09 C10 SING N N 20 J08 C26 C27 SING Y N 21 J08 N14 C10 DOUB Y N 22 J08 N14 C13 SING Y N 23 J08 C10 N11 SING Y N 24 J08 C13 C12 DOUB Y N 25 J08 N11 C12 SING Y N 26 J08 C12 C15 SING N N 27 J08 C15 C20 DOUB Y N 28 J08 C15 C16 SING Y N 29 J08 C20 C19 SING Y N 30 J08 C16 C17 DOUB Y N 31 J08 C19 C18 DOUB Y N 32 J08 C17 C18 SING Y N 33 J08 C13 H1 SING N N 34 J08 C17 H2 SING N N 35 J08 C20 H3 SING N N 36 J08 C21 H4 SING N N 37 J08 C24 H5 SING N N 38 J08 C24 H6 SING N N 39 J08 C26 H7 SING N N 40 J08 C28 H8 SING N N 41 J08 N01 H9 SING N N 42 J08 N01 H10 SING N N 43 J08 N03 H11 SING N N 44 J08 C05 H12 SING N N 45 J08 C06 H13 SING N N 46 J08 N08 H14 SING N N 47 J08 C09 H15 SING N N 48 J08 C09 H16 SING N N 49 J08 N11 H17 SING N N 50 J08 C16 H19 SING N N 51 J08 C18 H20 SING N N 52 J08 C19 H21 SING N N 53 J08 C27 H22 SING N N 54 J08 C30 H23 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J08 InChI InChI 1.03 "InChI=1S/C23H22N6O/c24-23(25)19-9-8-18(11-21(19)30-15-16-5-4-10-26-12-16)27-14-22-28-13-20(29-22)17-6-2-1-3-7-17/h1-13,27H,14-15H2,(H3,24,25)(H,28,29)" J08 InChIKey InChI 1.03 ZDLCAMFQMDNCSU-UHFFFAOYSA-N J08 SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1ccc(NCc2[nH]c(cn2)c3ccccc3)cc1OCc4cccnc4" J08 SMILES CACTVS 3.385 "NC(=N)c1ccc(NCc2[nH]c(cn2)c3ccccc3)cc1OCc4cccnc4" J08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(/c1ccc(cc1OCc2cccnc2)NCc3[nH]c(cn3)c4ccccc4)\N" J08 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2cnc([nH]2)CNc3ccc(c(c3)OCc4cccnc4)C(=N)N" # _pdbx_chem_comp_identifier.comp_id J08 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "4-[(5-phenyl-1~{H}-imidazol-2-yl)methylamino]-2-(pyridin-3-ylmethoxy)benzenecarboximidamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J08 "Create component" 2019-01-10 EBI J08 "Initial release" 2019-05-08 RCSB ##