data_J11 # _chem_comp.id J11 _chem_comp.name "N-{(3R,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 F N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N1-{(3'R,4'S)-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-23 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.495 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J11 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3JWU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J11 C1 C1 C 0 1 N N N 18.225 3.667 56.779 0.502 -0.957 -0.932 C1 J11 1 J11 N1 N1 N 0 1 N N N 16.847 3.623 57.220 -0.687 -0.914 -0.070 N1 J11 2 J11 C2 C2 C 0 1 N N N 18.770 5.093 56.765 1.711 -0.426 -0.159 C2 J11 3 J11 N2 N2 N 0 1 N N N 17.741 6.056 56.411 2.900 -0.469 -1.020 N2 J11 4 J11 C3 C3 C 0 1 N N N 18.158 7.341 55.894 4.083 0.034 -0.309 C3 J11 5 J11 C4 C4 C 0 1 N N N 18.423 7.223 54.407 5.299 -0.025 -1.236 C4 J11 6 J11 "N1'" "N1'" N 0 1 N N N 16.258 0.193 56.937 -2.871 -3.174 0.507 "N1'" J11 7 J11 C11 C11 C 0 1 Y N N 19.463 8.235 54.027 6.512 0.491 -0.507 C11 J11 8 J11 N11 N11 N 0 1 Y N N 12.367 0.138 58.126 -6.003 -0.251 0.235 N11 J11 9 J11 C12 C12 C 0 1 Y N N 19.047 9.529 53.742 7.308 -0.380 0.212 C12 J11 10 J11 C13 C13 C 0 1 Y N N 19.999 10.476 53.395 8.424 0.095 0.882 C13 J11 11 J11 F13 F13 F 0 1 N N N 19.588 11.720 53.124 9.203 -0.755 1.585 F13 J11 12 J11 C14 C14 C 0 1 Y N N 21.351 10.135 53.325 8.740 1.442 0.829 C14 J11 13 J11 C15 C15 C 0 1 Y N N 21.761 8.827 53.611 7.943 2.311 0.108 C15 J11 14 J11 C16 C16 C 0 1 Y N N 20.811 7.872 53.965 6.832 1.835 -0.564 C16 J11 15 J11 "C2'" "C2'" C 0 1 N N N 16.716 1.337 56.168 -1.963 -2.953 -0.647 "C2'" J11 16 J11 C21 C21 C 0 1 Y N N 12.713 1.422 58.414 -5.183 0.513 -0.460 C21 J11 17 J11 "C3'" "C3'" C 0 1 N N R 15.981 2.550 56.770 -1.870 -1.418 -0.781 "C3'" J11 18 J11 C31 C31 C 0 1 Y N N 12.201 2.036 59.564 -5.399 1.873 -0.566 C31 J11 19 J11 "C4'" "C4'" C 0 1 N N S 15.114 2.047 57.922 -3.159 -0.880 -0.125 "C4'" J11 20 J11 C41 C41 C 0 1 Y N N 11.326 1.316 60.391 -6.496 2.438 0.069 C41 J11 21 J11 "C5'" "C5'" C 0 1 N N N 15.514 0.591 58.133 -3.921 -2.135 0.350 "C5'" J11 22 J11 C51 C51 C 0 1 Y N N 10.974 0.009 60.073 -7.339 1.612 0.791 C51 J11 23 J11 C61 C61 C 0 1 Y N N 11.505 -0.562 58.905 -7.061 0.251 0.855 C61 J11 24 J11 N61 N61 N 0 1 N N N 11.175 -1.829 58.559 -7.900 -0.591 1.577 N61 J11 25 J11 C71 C71 C 0 1 N N N 13.660 2.193 57.517 -3.993 -0.106 -1.148 C71 J11 26 J11 C81 C81 C 0 1 N N N 10.777 1.978 61.628 -6.763 3.918 -0.025 C81 J11 27 J11 H1 H1 H 0 1 N N N 18.835 3.063 57.467 0.691 -1.985 -1.240 H1 J11 28 J11 H1A H1A H 0 1 N N N 18.283 3.257 55.760 0.334 -0.339 -1.813 H1A J11 29 J11 HN1 HN1 H 0 1 N N N 16.876 3.558 58.217 -0.533 -1.428 0.785 HN1 J11 30 J11 H2 H2 H 0 1 N N N 19.152 5.336 57.768 1.522 0.602 0.149 H2 J11 31 J11 H2A H2A H 0 1 N N N 19.582 5.154 56.025 1.878 -1.045 0.723 H2A J11 32 J11 HN2 HN2 H 0 1 N N N 17.181 5.629 55.701 3.059 -1.401 -1.371 HN2 J11 33 J11 H3 H3 H 0 1 N N N 17.364 8.082 56.068 3.911 1.066 -0.002 H3 J11 34 J11 H3A H3A H 0 1 N N N 19.077 7.662 56.406 4.267 -0.581 0.571 H3A J11 35 J11 H4 H4 H 0 1 N N N 18.785 6.211 54.172 5.471 -1.057 -1.543 H4 J11 36 J11 H4A H4A H 0 1 N N N 17.496 7.414 53.847 5.115 0.590 -2.117 H4A J11 37 J11 "HN1'" "HN1'" H 0 0 N N N 15.658 -0.360 56.358 -3.271 -4.100 0.481 "HN1'" J11 38 J11 H12 H12 H 0 1 N N N 18.001 9.793 53.790 7.060 -1.430 0.253 H12 J11 39 J11 H14 H14 H 0 1 N N N 22.082 10.881 53.050 9.609 1.814 1.351 H14 J11 40 J11 H15 H15 H 0 1 N N N 22.806 8.561 53.557 8.189 3.362 0.067 H15 J11 41 J11 H16 H16 H 0 1 N N N 21.114 6.860 54.190 6.212 2.514 -1.130 H16 J11 42 J11 "H2'" "H2'" H 0 1 N N N 17.806 1.456 56.253 -0.980 -3.377 -0.444 "H2'" J11 43 J11 "H2'A" "H2'A" H 0 0 N N N 16.470 1.218 55.103 -2.386 -3.388 -1.553 "H2'A" J11 44 J11 "H3'" "H3'" H 0 1 N N N 15.378 2.999 55.967 -1.831 -1.131 -1.832 "H3'" J11 45 J11 H31 H31 H 0 1 N N N 12.476 3.051 59.811 -4.721 2.490 -1.137 H31 J11 46 J11 "H4'" "H4'" H 0 1 N N N 15.250 2.608 58.858 -2.913 -0.242 0.725 "H4'" J11 47 J11 "H5'" "H5'" H 0 1 N N N 14.622 -0.040 58.261 -4.651 -2.443 -0.399 "H5'" J11 48 J11 "H5'A" "H5'A" H 0 0 N N N 16.142 0.489 59.030 -4.412 -1.944 1.304 "H5'A" J11 49 J11 H51 H51 H 0 1 N N N 10.308 -0.554 60.710 -8.202 2.019 1.297 H51 J11 50 J11 HN61 HN61 H 0 0 N N N 11.652 -2.080 57.717 -7.709 -1.541 1.625 HN61 J11 51 J11 HN6A HN6A H 0 0 N N N 11.442 -2.455 59.292 -8.675 -0.228 2.032 HN6A J11 52 J11 H71 H71 H 0 1 N N N 13.548 1.814 56.490 -4.337 -0.788 -1.926 H71 J11 53 J11 H71A H71A H 0 0 N N N 13.393 3.259 57.568 -3.383 0.678 -1.596 H71A J11 54 J11 H81 H81 H 0 1 N N N 9.835 2.491 61.383 -7.395 4.120 -0.890 H81 J11 55 J11 H81A H81A H 0 0 N N N 10.589 1.216 62.399 -7.268 4.255 0.880 H81A J11 56 J11 H81B H81B H 0 0 N N N 11.506 2.710 62.006 -5.818 4.451 -0.134 H81B J11 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J11 C1 N1 SING N N 1 J11 C1 C2 SING N N 2 J11 N1 "C3'" SING N N 3 J11 C2 N2 SING N N 4 J11 N2 C3 SING N N 5 J11 C3 C4 SING N N 6 J11 C4 C11 SING N N 7 J11 "N1'" "C2'" SING N N 8 J11 "N1'" "C5'" SING N N 9 J11 C11 C12 DOUB Y N 10 J11 C11 C16 SING Y N 11 J11 N11 C21 DOUB Y N 12 J11 N11 C61 SING Y N 13 J11 C12 C13 SING Y N 14 J11 C13 F13 SING N N 15 J11 C13 C14 DOUB Y N 16 J11 C14 C15 SING Y N 17 J11 C15 C16 DOUB Y N 18 J11 "C2'" "C3'" SING N N 19 J11 C21 C31 SING Y N 20 J11 C21 C71 SING N N 21 J11 "C3'" "C4'" SING N N 22 J11 C31 C41 DOUB Y N 23 J11 "C4'" "C5'" SING N N 24 J11 "C4'" C71 SING N N 25 J11 C41 C51 SING Y N 26 J11 C41 C81 SING N N 27 J11 C51 C61 DOUB Y N 28 J11 C61 N61 SING N N 29 J11 C1 H1 SING N N 30 J11 C1 H1A SING N N 31 J11 N1 HN1 SING N N 32 J11 C2 H2 SING N N 33 J11 C2 H2A SING N N 34 J11 N2 HN2 SING N N 35 J11 C3 H3 SING N N 36 J11 C3 H3A SING N N 37 J11 C4 H4 SING N N 38 J11 C4 H4A SING N N 39 J11 "N1'" "HN1'" SING N N 40 J11 C12 H12 SING N N 41 J11 C14 H14 SING N N 42 J11 C15 H15 SING N N 43 J11 C16 H16 SING N N 44 J11 "C2'" "H2'" SING N N 45 J11 "C2'" "H2'A" SING N N 46 J11 "C3'" "H3'" SING N N 47 J11 C31 H31 SING N N 48 J11 "C4'" "H4'" SING N N 49 J11 "C5'" "H5'" SING N N 50 J11 "C5'" "H5'A" SING N N 51 J11 C51 H51 SING N N 52 J11 N61 HN61 SING N N 53 J11 N61 HN6A SING N N 54 J11 C71 H71 SING N N 55 J11 C71 H71A SING N N 56 J11 C81 H81 SING N N 57 J11 C81 H81A SING N N 58 J11 C81 H81B SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J11 SMILES ACDLabs 11.02 "Fc1cccc(c1)CCNCCNC2C(CNC2)Cc3nc(N)cc(c3)C" J11 SMILES_CANONICAL CACTVS 3.352 "Cc1cc(N)nc(C[C@H]2CNC[C@@H]2NCCNCCc3cccc(F)c3)c1" J11 SMILES CACTVS 3.352 "Cc1cc(N)nc(C[CH]2CNC[CH]2NCCNCCc3cccc(F)c3)c1" J11 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)C[C@H]2CNC[C@@H]2NCCNCCc3cccc(c3)F" J11 SMILES "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)CC2CNCC2NCCNCCc3cccc(c3)F" J11 InChI InChI 1.03 "InChI=1S/C21H30FN5/c1-15-9-19(27-21(23)10-15)12-17-13-25-14-20(17)26-8-7-24-6-5-16-3-2-4-18(22)11-16/h2-4,9-11,17,20,24-26H,5-8,12-14H2,1H3,(H2,23,27)/t17-,20-/m0/s1" J11 InChIKey InChI 1.03 PUOKPLCASUFBAN-PXNSSMCTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J11 "SYSTEMATIC NAME" ACDLabs 11.02 "N-{(3R,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" J11 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[(3R,4S)-4-[(6-azanyl-4-methyl-pyridin-2-yl)methyl]pyrrolidin-3-yl]-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J11 "Create component" 2009-09-23 RCSB J11 "Modify aromatic_flag" 2011-06-04 RCSB J11 "Modify descriptor" 2011-06-04 RCSB J11 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id J11 _pdbx_chem_comp_synonyms.name ;N1-{(3'R,4'S)-4'-[(6"-amino-4"-methylpyridin-2"-yl)methyl]pyrrolidin-3'-yl}-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride ; _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##