data_J15
#
_chem_comp.id J15
_chem_comp.name "N-{3-[4-(3-AMINO-PROPYL)-PIPERAZIN-1-YL]-PROPYL}-3-NITRO-5-(GALACTOPYRANOSYL)-ALPHA-BENZAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H37 N5 O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-07-17
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 527.568
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J15
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PZJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J15 C1 C1 C 0 1 N N R 3.059 65.440 9.527 5.168 0.584 -0.689 C1 J15 1
J15 O1 O1 O 0 1 N N N 4.039 66.047 10.273 5.098 -0.803 -0.353 O1 J15 2
J15 C7 C7 C 0 1 Y N N 5.338 65.604 10.188 3.783 -1.146 -0.376 C7 J15 3
J15 C8 C8 C 0 1 Y N N 5.682 64.483 10.924 3.409 -2.472 -0.201 C8 J15 4
J15 C9 C9 C 0 1 Y N N 6.982 64.004 10.918 2.074 -2.828 -0.224 C9 J15 5
J15 N14 N14 N 1 1 N N N 7.313 62.845 11.639 1.684 -4.243 -0.038 N14 J15 6
J15 O15 O15 O -1 1 N N N 6.451 62.217 12.279 2.539 -5.093 0.134 O15 J15 7
J15 O16 O16 O 0 1 N N N 8.477 62.455 11.568 0.507 -4.559 -0.057 O16 J15 8
J15 C10 C10 C 0 1 Y N N 7.939 64.654 10.154 1.102 -1.866 -0.414 C10 J15 9
J15 C11 C11 C 0 1 Y N N 7.616 65.799 9.405 1.469 -0.532 -0.595 C11 J15 10
J15 C12 C12 C 0 1 Y N N 6.296 66.271 9.433 2.817 -0.174 -0.573 C12 J15 11
J15 C13 C13 C 0 1 N N N 8.570 66.495 8.612 0.431 0.501 -0.805 C13 J15 12
J15 N18 N18 N 0 1 N N N 9.871 66.155 8.528 -0.871 0.153 -0.826 N18 J15 13
J15 C19 C19 C 0 1 N N N 10.526 65.113 9.319 -1.899 1.176 -1.033 C19 J15 14
J15 C20 C20 C 0 1 N N N 12.000 65.425 9.591 -3.282 0.521 -1.014 C20 J15 15
J15 C21 C21 C 0 1 N N N 12.152 66.063 10.964 -4.355 1.589 -1.230 C21 J15 16
J15 N22 N22 N 0 1 N N N 12.170 65.264 11.955 -5.683 0.960 -1.212 N22 J15 17
J15 C23 C23 C 0 1 N N N 11.641 65.888 13.164 -6.639 1.979 -1.662 C23 J15 18
J15 C24 C24 C 0 1 N N N 11.716 64.935 14.358 -8.063 1.432 -1.551 C24 J15 19
J15 N25 N25 N 0 1 N N N 13.032 64.374 14.626 -8.374 1.147 -0.146 N25 J15 20
J15 C28 C28 C 0 1 N N N 13.032 63.673 15.695 -9.702 0.518 -0.127 C28 J15 21
J15 C35 C35 C 0 1 N N N 13.707 62.519 15.701 -9.986 -0.032 1.272 C35 J15 22
J15 C36 C36 C 0 1 N N N 15.180 62.666 16.033 -11.368 -0.687 1.292 C36 J15 23
J15 N37 N37 N 0 1 N N N 15.899 61.447 15.732 -11.641 -1.216 2.635 N37 J15 24
J15 C26 C26 C 0 1 N N N 13.541 63.759 13.393 -7.418 0.128 0.304 C26 J15 25
J15 C27 C27 C 0 1 N N N 13.516 64.782 12.255 -5.994 0.674 0.194 C27 J15 26
J15 O17 O17 O 0 1 N N N 8.187 67.492 8.007 0.752 1.663 -0.957 O17 J15 27
J15 C2 C2 C 0 1 N N R 1.759 66.229 9.576 6.614 0.952 -1.032 C2 J15 28
J15 O2 O2 O 0 1 N N N 1.951 67.637 9.517 7.047 0.189 -2.160 O2 J15 29
J15 C3 C3 C 0 1 N N S 1.051 65.809 10.869 7.508 0.641 0.172 C3 J15 30
J15 O3 O3 O 0 1 N N N -0.257 66.349 10.880 8.833 1.116 -0.076 O3 J15 31
J15 C4 C4 C 0 1 N N R 0.979 64.277 10.955 6.932 1.346 1.405 C4 J15 32
J15 O4 O4 O 0 1 N N N 0.101 63.787 9.937 7.029 2.762 1.238 O4 J15 33
J15 C5 C5 C 0 1 N N R 2.370 63.663 10.772 5.462 0.949 1.565 C5 J15 34
J15 C6 C6 C 0 1 N N N 2.382 62.147 10.789 4.888 1.622 2.813 C6 J15 35
J15 O6 O6 O 0 1 N N N 3.724 61.707 10.744 3.555 1.157 3.034 O6 J15 36
J15 O5 O5 O 0 1 N N N 2.959 64.049 9.531 4.722 1.364 0.418 O5 J15 37
J15 H1 H1 H 0 1 N N N 3.442 65.506 8.482 4.530 0.781 -1.551 H1 J15 38
J15 H8 H8 H 0 1 N N N 4.912 63.966 11.521 4.165 -3.229 -0.048 H8 J15 39
J15 H10 H10 H 0 1 N N N 8.967 64.256 10.141 0.060 -2.147 -0.431 H10 J15 40
J15 H12 H12 H 0 1 N N N 6.010 67.169 8.859 3.107 0.857 -0.709 H12 J15 41
J15 H18 H18 H 0 1 N N N 10.380 66.708 7.838 -1.127 -0.775 -0.704 H18 J15 42
J15 H191 1H19 H 0 0 N N N 9.973 64.923 10.268 -1.740 1.661 -1.996 H191 J15 43
J15 H192 2H19 H 0 0 N N N 10.408 64.112 8.840 -1.838 1.919 -0.238 H192 J15 44
J15 H201 1H20 H 0 0 N N N 12.646 64.523 9.475 -3.440 0.036 -0.050 H201 J15 45
J15 H202 2H20 H 0 0 N N N 12.449 66.052 8.786 -3.343 -0.222 -1.809 H202 J15 46
J15 H211 1H21 H 0 0 N N N 13.061 66.707 10.982 -4.196 2.074 -2.194 H211 J15 47
J15 H212 2H21 H 0 0 N N N 11.358 66.831 11.113 -4.294 2.332 -0.435 H212 J15 48
J15 H231 1H23 H 0 0 N N N 12.148 66.856 13.380 -6.430 2.240 -2.699 H231 J15 49
J15 H232 2H23 H 0 0 N N N 10.604 66.269 13.008 -6.542 2.868 -1.038 H232 J15 50
J15 H241 1H24 H 0 0 N N N 11.320 65.435 15.272 -8.145 0.516 -2.135 H241 J15 51
J15 H242 2H24 H 0 0 N N N 10.967 64.116 14.241 -8.766 2.171 -1.936 H242 J15 52
J15 H281 1H28 H 0 0 N N N 13.387 64.304 16.542 -9.728 -0.297 -0.850 H281 J15 53
J15 H282 2H28 H 0 0 N N N 11.977 63.477 16.000 -10.458 1.258 -0.387 H282 J15 54
J15 H351 1H35 H 0 0 N N N 13.222 61.786 16.387 -9.960 0.783 1.995 H351 J15 55
J15 H352 2H35 H 0 0 N N N 13.576 61.984 14.731 -9.229 -0.773 1.532 H352 J15 56
J15 H361 1H36 H 0 0 N N N 15.631 63.548 15.522 -11.394 -1.503 0.569 H361 J15 57
J15 H362 2H36 H 0 0 N N N 15.334 62.985 17.089 -12.125 0.053 1.032 H362 J15 58
J15 H371 1H37 H 0 0 N N N 16.889 61.545 15.955 -11.710 -0.419 3.251 H371 J15 59
J15 H372 2H37 H 0 0 N N N 15.757 61.154 14.765 -12.558 -1.636 2.601 H372 J15 60
J15 H261 1H26 H 0 0 N N N 14.553 63.313 13.533 -7.627 -0.133 1.342 H261 J15 61
J15 H262 2H26 H 0 0 N N N 12.988 62.826 13.130 -7.515 -0.761 -0.319 H262 J15 62
J15 H271 1H27 H 0 0 N N N 14.006 64.373 11.340 -5.291 -0.065 0.579 H271 J15 63
J15 H272 2H27 H 0 0 N N N 14.206 65.631 12.467 -5.912 1.591 0.778 H272 J15 64
J15 H2 H2 H 0 1 N N N 1.142 65.998 8.676 6.674 2.015 -1.266 H2 J15 65
J15 HO2 HO2 H 0 1 N N N 1.139 68.129 9.547 6.458 0.414 -2.893 HO2 J15 66
J15 H3 H3 H 0 1 N N N 1.623 66.193 11.745 7.531 -0.435 0.343 H3 J15 67
J15 HO3 HO3 H 0 1 N N N -0.695 66.088 11.681 9.156 0.648 -0.858 HO3 J15 68
J15 H4 H4 H 0 1 N N N 0.591 63.989 11.960 7.490 1.044 2.291 H4 J15 69
J15 HO4 HO4 H 0 1 N N N 0.056 62.839 9.990 7.968 2.968 1.141 HO4 J15 70
J15 H5 H5 H 0 1 N N N 2.945 64.050 11.644 5.389 -0.134 1.670 H5 J15 71
J15 H61 1H6 H 0 1 N N N 1.822 61.724 11.656 5.506 1.376 3.676 H61 J15 72
J15 H62 2H6 H 0 1 N N N 1.759 61.705 9.975 4.877 2.702 2.670 H62 J15 73
J15 HO6 HO6 H 0 1 N N N 3.731 60.757 10.754 3.231 1.604 3.827 HO6 J15 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J15 C1 O1 SING N N 1
J15 C1 C2 SING N N 2
J15 C1 O5 SING N N 3
J15 C1 H1 SING N N 4
J15 O1 C7 SING N N 5
J15 C7 C8 DOUB Y N 6
J15 C7 C12 SING Y N 7
J15 C8 C9 SING Y N 8
J15 C8 H8 SING N N 9
J15 C9 N14 SING N N 10
J15 C9 C10 DOUB Y N 11
J15 N14 O15 SING N N 12
J15 N14 O16 DOUB N N 13
J15 C10 C11 SING Y N 14
J15 C10 H10 SING N N 15
J15 C11 C12 DOUB Y N 16
J15 C11 C13 SING N N 17
J15 C12 H12 SING N N 18
J15 C13 N18 SING N N 19
J15 C13 O17 DOUB N N 20
J15 N18 C19 SING N N 21
J15 N18 H18 SING N N 22
J15 C19 C20 SING N N 23
J15 C19 H191 SING N N 24
J15 C19 H192 SING N N 25
J15 C20 C21 SING N N 26
J15 C20 H201 SING N N 27
J15 C20 H202 SING N N 28
J15 C21 N22 SING N N 29
J15 C21 H211 SING N N 30
J15 C21 H212 SING N N 31
J15 N22 C23 SING N N 32
J15 N22 C27 SING N N 33
J15 C23 C24 SING N N 34
J15 C23 H231 SING N N 35
J15 C23 H232 SING N N 36
J15 C24 N25 SING N N 37
J15 C24 H241 SING N N 38
J15 C24 H242 SING N N 39
J15 N25 C28 SING N N 40
J15 N25 C26 SING N N 41
J15 C28 C35 SING N N 42
J15 C28 H281 SING N N 43
J15 C28 H282 SING N N 44
J15 C35 C36 SING N N 45
J15 C35 H351 SING N N 46
J15 C35 H352 SING N N 47
J15 C36 N37 SING N N 48
J15 C36 H361 SING N N 49
J15 C36 H362 SING N N 50
J15 N37 H371 SING N N 51
J15 N37 H372 SING N N 52
J15 C26 C27 SING N N 53
J15 C26 H261 SING N N 54
J15 C26 H262 SING N N 55
J15 C27 H271 SING N N 56
J15 C27 H272 SING N N 57
J15 C2 O2 SING N N 58
J15 C2 C3 SING N N 59
J15 C2 H2 SING N N 60
J15 O2 HO2 SING N N 61
J15 C3 O3 SING N N 62
J15 C3 C4 SING N N 63
J15 C3 H3 SING N N 64
J15 O3 HO3 SING N N 65
J15 C4 O4 SING N N 66
J15 C4 C5 SING N N 67
J15 C4 H4 SING N N 68
J15 O4 HO4 SING N N 69
J15 C5 C6 SING N N 70
J15 C5 O5 SING N N 71
J15 C5 H5 SING N N 72
J15 C6 O6 SING N N 73
J15 C6 H61 SING N N 74
J15 C6 H62 SING N N 75
J15 O6 HO6 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J15 SMILES ACDLabs 10.04 "[O-][N+](=O)c3cc(OC1OC(C(O)C(O)C1O)CO)cc(C(=O)NCCCN2CCN(CCCN)CC2)c3"
J15 SMILES_CANONICAL CACTVS 3.341 "NCCCN1CCN(CCCNC(=O)c2cc(O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)cc(c2)[N+]([O-])=O)CC1"
J15 SMILES CACTVS 3.341 "NCCCN1CCN(CCCNC(=O)c2cc(O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)cc(c2)[N+]([O-])=O)CC1"
J15 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])O[C@@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)C(=O)NCCCN3CCN(CC3)CCCN"
J15 SMILES "OpenEye OEToolkits" 1.5.0 "c1c(cc(cc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O)C(=O)NCCCN3CCN(CC3)CCCN"
J15 InChI InChI 1.03
"InChI=1S/C23H37N5O9/c24-3-1-5-26-7-9-27(10-8-26)6-2-4-25-22(33)15-11-16(28(34)35)13-17(12-15)36-23-21(32)20(31)19(30)18(14-29)37-23/h11-13,18-21,23,29-32H,1-10,14,24H2,(H,25,33)/t18-,19+,20+,21-,23+/m1/s1"
J15 InChIKey InChI 1.03 UEIGEWJJVQHIAX-MKQKURRLSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
J15 "SYSTEMATIC NAME" ACDLabs 10.04 "N-{3-[4-(3-aminopropyl)piperazin-1-yl]propyl}-3-(alpha-D-galactopyranosyloxy)-5-nitrobenzamide"
J15 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[3-[4-(3-aminopropyl)piperazin-1-yl]propyl]-3-nitro-5-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-benzamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J15 "Create component" 2003-07-17 RCSB
J15 "Modify descriptor" 2011-06-04 RCSB
#