data_J1C
#
_chem_comp.id J1C
_chem_comp.name "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H36 N12 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-11-11
_chem_comp.pdbx_modified_date 2011-12-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 628.706
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code J1C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3UDV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J1C C1 C1 C 0 1 N N S 1.921 17.243 15.588 -3.691 0.193 1.018 C1 J1C 1
J1C N1 N1 N 0 1 Y N N 2.629 14.362 13.483 -7.087 0.506 -0.129 N1 J1C 2
J1C O1 O1 O 0 1 N N N 1.964 16.456 14.402 -4.712 0.257 0.007 O1 J1C 3
J1C S1 S1 S 0 1 N N N 3.931 19.384 15.145 -1.905 -0.906 -0.738 S1 J1C 4
J1C C2 C2 C 0 1 N N S 2.917 16.540 16.568 -4.402 0.123 2.383 C2 J1C 5
J1C N2 N2 N 0 1 Y N N 2.303 12.985 11.646 -8.449 -0.570 -1.452 N2 J1C 6
J1C O2 O2 O 0 1 N N N 2.267 16.391 17.793 -4.018 1.226 3.205 O2 J1C 7
J1C C3 C3 C 0 1 N N R 3.205 15.124 15.883 -5.908 0.207 2.032 C3 J1C 8
J1C N3 N3 N 0 1 N N N 4.639 12.439 9.655 -11.323 0.364 -2.016 N3 J1C 9
J1C O3 O3 O 0 1 N N N 2.964 14.052 16.765 -6.601 1.045 2.958 O3 J1C 10
J1C C4 C4 C 0 1 N N R 2.201 15.101 14.714 -5.876 0.850 0.621 C4 J1C 11
J1C N4 N4 N 0 1 Y N N 5.922 13.830 11.030 -10.772 2.129 -0.552 N4 J1C 12
J1C O4 O4 O 0 1 N N N 4.812 25.488 11.104 5.827 -2.519 1.411 O4 J1C 13
J1C C5 C5 C 0 1 Y N N 1.739 13.533 12.726 -7.250 -0.573 -0.947 C5 J1C 14
J1C N5 N5 N 0 1 Y N N 5.020 14.919 13.035 -8.701 2.315 0.458 N5 J1C 15
J1C O5 O5 O 0 1 N N N 9.362 24.901 7.068 5.623 2.747 -1.691 O5 J1C 16
J1C C6 C6 C 0 1 Y N N 3.624 13.457 11.649 -9.131 0.506 -0.990 C6 J1C 17
J1C N6 N6 N 0 1 N N N 5.294 19.996 11.416 1.575 -3.809 -1.038 N6 J1C 18
J1C C7 C7 C 0 1 Y N N 4.716 13.230 10.760 -10.427 1.013 -1.185 C7 J1C 19
J1C C8 C8 C 0 1 Y N N 5.974 14.614 12.130 -9.925 2.751 0.248 C8 J1C 20
J1C N8 N8 N 0 1 N N N 7.290 28.217 5.846 9.297 2.415 -0.235 N8 J1C 21
J1C C9 C9 C 0 1 Y N N 3.836 14.310 12.771 -8.266 1.208 -0.134 C9 J1C 22
J1C N9 N9 N 0 1 N N N 8.997 28.429 4.217 9.788 4.540 -1.010 N9 J1C 23
J1C C10 C10 C 0 1 N N N 2.162 18.779 15.301 -2.834 -1.058 0.812 C10 J1C 24
J1C N10 N10 N 0 1 N N N 9.126 26.635 5.694 7.648 3.638 -1.368 N10 J1C 25
J1C C11 C11 C 0 1 N N N 4.979 18.306 13.936 -0.966 -2.456 -0.804 C11 J1C 26
J1C N11 N11 N 0 1 N N N 6.993 25.589 8.470 6.299 0.447 -0.353 N11 J1C 27
J1C C12 C12 C 0 1 N N N 4.235 18.030 12.643 -0.211 -2.541 -2.134 C12 J1C 28
J1C N12 N12 N 0 1 N N N 5.679 27.889 7.554 8.870 0.237 0.576 N12 J1C 29
J1C C13 C13 C 0 1 N N N 4.017 19.347 11.882 0.627 -3.822 -2.159 C13 J1C 30
J1C C14 C14 C 0 1 N N N 6.387 20.033 12.495 0.873 -3.776 0.251 C14 J1C 31
J1C C15 C15 C 0 1 N N N 6.367 18.880 13.556 0.042 -2.494 0.348 C15 J1C 32
J1C C16 C16 C 0 1 N N N 4.981 21.279 10.616 2.514 -2.686 -1.155 C16 J1C 33
J1C C18 C18 C 0 1 N N N 5.448 25.006 10.166 5.638 -1.653 0.577 C18 J1C 34
J1C C19 C19 C 0 1 N N N 8.443 27.756 5.285 8.905 3.508 -0.863 C19 J1C 35
J1C C20 C20 C 0 1 N N N 8.670 25.873 6.797 6.747 2.641 -1.232 C20 J1C 36
J1C C21 C21 C 0 1 N N N 5.896 25.937 9.060 6.574 -0.533 0.461 C21 J1C 37
J1C C22 C22 C 0 1 N N N 5.087 27.190 8.734 7.837 -0.537 1.283 C22 J1C 38
J1C C23 C23 C 0 1 N N N 4.988 28.245 9.833 8.318 -1.976 1.477 C23 J1C 39
J1C C24 C24 C 0 1 N N N 3.645 26.773 8.387 7.562 0.102 2.647 C24 J1C 40
J1C C25 C25 C 0 1 N N N 6.818 27.481 6.923 8.470 1.391 -0.062 C25 J1C 41
J1C C26 C26 C 0 1 N N N 7.447 26.340 7.401 7.143 1.469 -0.539 C26 J1C 42
J1C C27 C27 C 0 1 N N N 5.297 22.686 11.185 3.631 -2.845 -0.121 C27 J1C 43
J1C N28 N28 N 0 1 N N N 5.725 23.637 10.121 4.568 -1.724 -0.238 N28 J1C 44
J1C H1 H1 H 0 1 N N N 0.927 17.280 16.058 -3.066 1.085 0.971 H1 J1C 45
J1C H2 H2 H 0 1 N N N 3.852 17.090 16.747 -4.178 -0.820 2.882 H2 J1C 46
J1C HO2 HO2 H 0 1 N N N 2.849 15.965 18.411 -4.436 1.232 4.077 HO2 J1C 47
J1C H3 H3 H 0 1 N N N 4.254 15.009 15.573 -6.356 -0.786 1.997 H3 J1C 48
J1C HN3 HN3 H 0 1 N N N 5.526 12.423 9.193 -12.215 0.724 -2.142 HN3 J1C 49
J1C HN3A HN3A H 0 0 N N N 4.389 11.510 9.927 -11.059 -0.450 -2.473 HN3A J1C 50
J1C HO3 HO3 H 0 1 N N N 3.146 13.231 16.323 -6.571 0.730 3.872 HO3 J1C 51
J1C H4 H4 H 0 1 N N N 1.312 14.543 15.043 -5.764 1.932 0.692 H4 J1C 52
J1C H5 H5 H 0 1 N N N 0.708 13.367 13.003 -6.495 -1.319 -1.145 H5 J1C 53
J1C H8 H8 H 0 1 N N N 6.935 15.071 12.315 -10.246 3.656 0.743 H8 J1C 54
J1C HN9 HN9 H 0 1 N N N 8.553 29.250 3.859 10.688 4.463 -0.656 HN9 J1C 55
J1C HN9A HN9A H 0 0 N N N 9.843 28.096 3.801 9.516 5.350 -1.469 HN9A J1C 56
J1C H10 H10 H 0 1 N N N 1.667 19.003 14.345 -2.138 -1.161 1.644 H10 J1C 57
J1C H10A H10A H 0 0 N N N 1.713 19.331 16.140 -3.478 -1.936 0.765 H10A J1C 58
J1C HN10 HN10 H 0 0 N N N 9.953 26.355 5.207 7.398 4.453 -1.830 HN10 J1C 59
J1C H11 H11 H 0 1 N N N 5.148 17.386 14.515 -1.650 -3.300 -0.719 H11 J1C 60
J1C H12 H12 H 0 1 N N N 4.826 17.342 12.021 -0.926 -2.558 -2.957 H12 J1C 61
J1C H12A H12A H 0 0 N N N 3.260 17.574 12.872 0.443 -1.676 -2.237 H12A J1C 62
J1C HN12 HN12 H 0 0 N N N 4.969 27.855 6.851 9.795 -0.053 0.559 HN12 J1C 63
J1C H13 H13 H 0 1 N N N 3.503 20.049 12.555 1.176 -3.878 -3.099 H13 J1C 64
J1C H13A H13A H 0 0 N N N 3.401 19.132 10.997 -0.030 -4.687 -2.070 H13A J1C 65
J1C H14 H14 H 0 1 N N N 7.356 19.980 11.977 0.215 -4.641 0.329 H14 J1C 66
J1C H14A H14A H 0 0 N N N 6.270 20.980 13.043 1.600 -3.799 1.062 H14A J1C 67
J1C H15 H15 H 0 1 N N N 6.815 19.280 14.477 0.700 -1.628 0.284 H15 J1C 68
J1C H15A H15A H 0 0 N N N 6.959 18.050 13.143 -0.492 -2.477 1.298 H15A J1C 69
J1C H16 H16 H 0 1 N N N 5.563 21.198 9.686 2.945 -2.675 -2.156 H16 J1C 70
J1C H16A H16A H 0 0 N N N 3.894 21.265 10.446 1.985 -1.750 -0.977 H16A J1C 71
J1C H23 H23 H 0 1 N N N 4.556 27.793 10.738 9.319 -1.970 1.910 H23 J1C 72
J1C H23A H23A H 0 0 N N N 5.992 28.633 10.060 7.636 -2.500 2.146 H23A J1C 73
J1C H23B H23B H 0 0 N N N 4.345 29.070 9.493 8.343 -2.484 0.513 H23B J1C 74
J1C H24 H24 H 0 1 N N N 3.195 26.256 9.248 7.215 1.125 2.505 H24 J1C 75
J1C H24A H24A H 0 0 N N N 3.053 27.668 8.146 6.798 -0.472 3.169 H24A J1C 76
J1C H24B H24B H 0 0 N N N 3.658 26.097 7.519 8.479 0.107 3.237 H24B J1C 77
J1C H27 H27 H 0 1 N N N 4.390 23.082 11.666 3.200 -2.855 0.880 H27 J1C 78
J1C H27A H27A H 0 0 N N N 6.110 22.593 11.920 4.160 -3.781 -0.299 H27A J1C 79
J1C HN28 HN28 H 0 0 N N N 6.234 23.279 9.338 4.417 -1.033 -0.902 HN28 J1C 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J1C C1 O1 SING N N 1
J1C C1 C2 SING N N 2
J1C C1 C10 SING N N 3
J1C N1 C4 SING N N 4
J1C N1 C5 SING Y N 5
J1C N1 C9 SING Y N 6
J1C O1 C4 SING N N 7
J1C S1 C10 SING N N 8
J1C S1 C11 SING N N 9
J1C C2 O2 SING N N 10
J1C C2 C3 SING N N 11
J1C N2 C5 DOUB Y N 12
J1C N2 C6 SING Y N 13
J1C C3 O3 SING N N 14
J1C C3 C4 SING N N 15
J1C N3 C7 SING N N 16
J1C N4 C7 DOUB Y N 17
J1C N4 C8 SING Y N 18
J1C O4 C18 DOUB N N 19
J1C N5 C8 DOUB Y N 20
J1C N5 C9 SING Y N 21
J1C O5 C20 DOUB N N 22
J1C C6 C7 SING Y N 23
J1C C6 C9 DOUB Y N 24
J1C N6 C13 SING N N 25
J1C N6 C14 SING N N 26
J1C N6 C16 SING N N 27
J1C N8 C19 DOUB N N 28
J1C N8 C25 SING N N 29
J1C N9 C19 SING N N 30
J1C N10 C19 SING N N 31
J1C N10 C20 SING N N 32
J1C C11 C12 SING N N 33
J1C C11 C15 SING N N 34
J1C N11 C21 DOUB N N 35
J1C N11 C26 SING N N 36
J1C C12 C13 SING N N 37
J1C N12 C22 SING N N 38
J1C N12 C25 SING N N 39
J1C C14 C15 SING N N 40
J1C C16 C27 SING N N 41
J1C C18 C21 SING N N 42
J1C C18 N28 SING N N 43
J1C C20 C26 SING N N 44
J1C C21 C22 SING N N 45
J1C C22 C23 SING N N 46
J1C C22 C24 SING N N 47
J1C C25 C26 DOUB N N 48
J1C C27 N28 SING N N 49
J1C C1 H1 SING N N 50
J1C C2 H2 SING N N 51
J1C O2 HO2 SING N N 52
J1C C3 H3 SING N N 53
J1C N3 HN3 SING N N 54
J1C N3 HN3A SING N N 55
J1C O3 HO3 SING N N 56
J1C C4 H4 SING N N 57
J1C C5 H5 SING N N 58
J1C C8 H8 SING N N 59
J1C N9 HN9 SING N N 60
J1C N9 HN9A SING N N 61
J1C C10 H10 SING N N 62
J1C C10 H10A SING N N 63
J1C N10 HN10 SING N N 64
J1C C11 H11 SING N N 65
J1C C12 H12 SING N N 66
J1C C12 H12A SING N N 67
J1C N12 HN12 SING N N 68
J1C C13 H13 SING N N 69
J1C C13 H13A SING N N 70
J1C C14 H14 SING N N 71
J1C C14 H14A SING N N 72
J1C C15 H15 SING N N 73
J1C C15 H15A SING N N 74
J1C C16 H16 SING N N 75
J1C C16 H16A SING N N 76
J1C C23 H23 SING N N 77
J1C C23 H23A SING N N 78
J1C C23 H23B SING N N 79
J1C C24 H24 SING N N 80
J1C C24 H24A SING N N 81
J1C C24 H24B SING N N 82
J1C C27 H27 SING N N 83
J1C C27 H27A SING N N 84
J1C N28 HN28 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J1C SMILES ACDLabs 12.01 "O=C2NC(=NC=1NC(C(=NC=12)C(=O)NCCN6CCC(SCC5OC(n4cnc3c(ncnc34)N)C(O)C5O)CC6)(C)C)N"
J1C InChI InChI 1.03
;InChI=1S/C26H36N12O5S/c1-26(2)18(33-15-20(36-26)34-25(28)35-22(15)41)23(42)29-5-8-37-6-3-12(4-7-37)44-9-13-16(39)17(40)24(43-13)38-11-32-14-19(27)30-10-31-21(14)38/h10-13,16-17,24,39-40H,3-9H2,1-2H3,(H,29,42)(H2,27,30,31)(H4,28,34,35,36,41)/t13-,16-,17-,24-/m1/s1
;
J1C InChIKey InChI 1.03 LXHMIPYFQUZUMS-FUKGTJLDSA-N
J1C SMILES_CANONICAL CACTVS 3.370 "CC1(C)NC2=C(N=C1C(=O)NCCN3CCC(CC3)SC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N"
J1C SMILES CACTVS 3.370 "CC1(C)NC2=C(N=C1C(=O)NCCN3CCC(CC3)SC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N"
J1C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CCC(CC3)SC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)C"
J1C SMILES "OpenEye OEToolkits" 1.7.2 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CCC(CC3)SCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
J1C "SYSTEMATIC NAME" ACDLabs 12.01 "5'-S-[1-(2-{[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridin-6-yl)carbonyl]amino}ethyl)piperidin-4-yl]-5'-thioadenosine"
J1C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[2-[4-[[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]piperidin-1-yl]ethyl]-2-azanyl-7,7-dimethyl-4-oxidanylidene-3,8-dihydropteridine-6-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J1C "Create component" 2011-11-11 RCSB
#