data_J2H # _chem_comp.id J2H _chem_comp.name "8-[(3-methylpyridin-2-yl)methyl]-3-(4-phenylphenyl)-1-pyrimidin-2-yl-1,3,8-triazaspiro[4.5]decane-2,4-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H28 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-01-14 _chem_comp.pdbx_modified_date 2020-01-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.582 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J2H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6QGV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J2H C10 C1 C 0 1 Y N N 28.583 2.064 38.222 9.262 0.287 -0.630 C10 J2H 1 J2H C11 C2 C 0 1 Y N N 28.260 2.461 39.502 9.823 -0.952 -0.376 C11 J2H 2 J2H C12 C3 C 0 1 Y N N 26.984 2.299 39.989 9.019 -2.024 -0.032 C12 J2H 3 J2H C13 C4 C 0 1 Y N N 26.021 1.737 39.172 7.651 -1.862 0.060 C13 J2H 4 J2H C14 C5 C 0 1 Y N N 25.102 1.143 35.724 5.043 0.810 -0.352 C14 J2H 5 J2H C36 C6 C 0 1 N N N 18.791 0.767 32.203 -2.825 0.134 1.713 C36 J2H 6 J2H C37 C7 C 0 1 N N N 19.959 -0.280 32.174 -1.437 -0.512 1.731 C37 J2H 7 J2H C24 C8 C 0 1 N N N 20.151 -1.015 33.518 -0.761 -0.292 0.382 C24 J2H 8 J2H C25 C9 C 0 1 N N N 18.776 -1.227 34.182 -1.630 -0.839 -0.746 C25 J2H 9 J2H C16 C10 C 0 1 N N N 22.194 -2.074 34.023 0.856 1.246 0.052 C16 J2H 10 J2H C15 C11 C 0 1 Y N N 24.080 0.643 34.950 3.676 0.974 -0.267 C15 J2H 11 J2H C02 C12 C 0 1 N N N 20.850 -0.093 34.399 0.603 -0.941 0.361 C02 J2H 12 J2H C04 C13 C 0 1 Y N N 23.182 -0.237 35.510 2.867 -0.103 0.073 C04 J2H 13 J2H C05 C14 C 0 1 Y N N 23.296 -0.631 36.815 3.431 -1.347 0.328 C05 J2H 14 J2H C06 C15 C 0 1 Y N N 24.320 -0.135 37.585 4.797 -1.515 0.243 C06 J2H 15 J2H C07 C16 C 0 1 Y N N 25.216 0.737 37.039 5.611 -0.436 -0.098 C07 J2H 16 J2H C08 C17 C 0 1 Y N N 26.335 1.331 37.902 7.081 -0.616 -0.195 C08 J2H 17 J2H C09 C18 C 0 1 Y N N 27.609 1.508 37.408 7.896 0.461 -0.536 C09 J2H 18 J2H C18 C19 C 0 1 Y N N 20.578 -3.292 32.541 -1.411 2.164 0.108 C18 J2H 19 J2H C20 C20 C 0 1 Y N N 21.038 -5.431 31.938 -3.609 2.839 0.192 C20 J2H 20 J2H C21 C21 C 0 1 Y N N 19.955 -5.425 31.139 -3.204 4.148 -0.014 C21 J2H 21 J2H C22 C22 C 0 1 Y N N 19.205 -4.330 31.084 -1.848 4.409 -0.145 C22 J2H 22 J2H C26 C23 C 0 1 N N N 17.769 -0.099 33.917 -3.013 -0.183 -0.684 C26 J2H 23 J2H C28 C24 C 0 1 N N N 16.956 -0.493 31.896 -5.008 0.035 0.670 C28 J2H 24 J2H C29 C25 C 0 1 Y N N 16.490 0.220 30.581 -5.878 -0.856 -0.178 C29 J2H 25 J2H C31 C26 C 0 1 Y N N 15.688 2.145 29.551 -6.893 -1.265 -2.206 C31 J2H 26 J2H C32 C27 C 0 1 Y N N 15.750 1.539 28.317 -7.447 -2.441 -1.736 C32 J2H 27 J2H C33 C28 C 0 1 Y N N 16.168 0.278 28.224 -7.206 -2.824 -0.426 C33 J2H 28 J2H C34 C29 C 0 1 Y N N 16.542 -0.395 29.324 -6.401 -2.015 0.362 C34 J2H 29 J2H C35 C30 C 0 1 N N N 17.026 -1.825 29.184 -6.101 -2.395 1.789 C35 J2H 30 J2H N03 N1 N 0 1 N N N 22.122 -0.739 34.702 1.478 0.066 0.160 N03 J2H 31 J2H N17 N2 N 0 1 N N N 20.906 -2.157 33.308 -0.481 1.134 0.172 N17 J2H 32 J2H N19 N3 N 0 1 Y N N 21.338 -4.367 32.639 -2.698 1.882 0.247 N19 J2H 33 J2H N23 N4 N 0 1 Y N N 19.524 -3.279 31.780 -0.990 3.404 -0.084 N23 J2H 34 J2H N27 N5 N 0 1 N N N 17.622 0.369 32.704 -3.622 -0.449 0.626 N27 J2H 35 J2H N30 N6 N 0 1 Y N N 16.054 1.458 30.643 -6.137 -0.517 -1.426 N30 J2H 36 J2H O01 O1 O 0 1 N N N 20.600 0.933 34.797 0.858 -2.119 0.496 O01 J2H 37 J2H O38 O2 O 0 1 N N N 23.068 -2.795 34.088 1.432 2.300 -0.131 O38 J2H 38 J2H H101 H1 H 0 0 N N N 29.591 2.186 37.855 9.895 1.120 -0.898 H101 J2H 39 J2H H111 H2 H 0 0 N N N 29.018 2.905 40.130 10.893 -1.083 -0.447 H111 J2H 40 J2H H121 H3 H 0 0 N N N 26.738 2.606 40.995 9.462 -2.989 0.165 H121 J2H 41 J2H H131 H4 H 0 0 N N N 25.012 1.617 39.538 7.024 -2.700 0.327 H131 J2H 42 J2H H141 H5 H 0 0 N N N 25.808 1.846 35.307 5.671 1.647 -0.621 H141 J2H 43 J2H H361 H6 H 0 0 N N N 19.132 1.625 32.802 -3.323 -0.048 2.666 H361 J2H 44 J2H H362 H7 H 0 0 N N N 18.613 1.091 31.167 -2.725 1.208 1.555 H362 J2H 45 J2H H371 H8 H 0 0 N N N 19.740 -1.026 31.396 -0.835 -0.057 2.518 H371 J2H 46 J2H H372 H9 H 0 0 N N N 20.893 0.245 31.926 -1.535 -1.581 1.919 H372 J2H 47 J2H H252 H10 H 0 0 N N N 18.350 -2.167 33.801 -1.164 -0.615 -1.706 H252 J2H 48 J2H H251 H11 H 0 0 N N N 18.926 -1.307 35.269 -1.734 -1.918 -0.635 H251 J2H 49 J2H H151 H12 H 0 0 N N N 23.984 0.938 33.915 3.235 1.939 -0.464 H151 J2H 50 J2H H051 H13 H 0 0 N N N 22.586 -1.327 37.237 2.800 -2.182 0.592 H051 J2H 51 J2H H061 H14 H 0 0 N N N 24.415 -0.434 38.618 5.236 -2.482 0.442 H061 J2H 52 J2H H091 H15 H 0 0 N N N 27.846 1.216 36.396 7.460 1.430 -0.730 H091 J2H 53 J2H H201 H16 H 0 0 N N N 21.659 -6.313 32.001 -4.657 2.603 0.306 H201 J2H 54 J2H H211 H17 H 0 0 N N N 19.700 -6.295 30.553 -3.927 4.949 -0.063 H211 J2H 55 J2H H221 H18 H 0 0 N N N 18.325 -4.313 30.458 -1.499 5.418 -0.306 H221 J2H 56 J2H H261 H19 H 0 0 N N N 18.066 0.749 34.552 -2.911 0.893 -0.825 H261 J2H 57 J2H H262 H20 H 0 0 N N N 16.784 -0.469 34.237 -3.646 -0.594 -1.470 H262 J2H 58 J2H H282 H21 H 0 0 N N N 16.074 -0.878 32.429 -5.049 1.055 0.287 H282 J2H 59 J2H H281 H22 H 0 0 N N N 17.621 -1.330 31.636 -5.366 0.019 1.700 H281 J2H 60 J2H H311 H23 H 0 0 N N N 15.347 3.166 29.639 -7.082 -0.955 -3.223 H311 J2H 61 J2H H321 H24 H 0 0 N N N 15.461 2.083 27.430 -8.066 -3.049 -2.379 H321 J2H 62 J2H H331 H25 H 0 0 N N N 16.206 -0.206 27.259 -7.626 -3.738 -0.031 H331 J2H 63 J2H H352 H26 H 0 0 N N N 18.115 -1.830 29.026 -5.150 -2.926 1.831 H352 J2H 64 J2H H353 H27 H 0 0 N N N 16.786 -2.385 30.100 -6.041 -1.494 2.400 H353 J2H 65 J2H H351 H28 H 0 0 N N N 16.528 -2.298 28.324 -6.894 -3.039 2.168 H351 J2H 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J2H C33 C32 DOUB Y N 1 J2H C33 C34 SING Y N 2 J2H C32 C31 SING Y N 3 J2H C35 C34 SING N N 4 J2H C34 C29 DOUB Y N 5 J2H C31 N30 DOUB Y N 6 J2H C29 N30 SING Y N 7 J2H C29 C28 SING N N 8 J2H C22 C21 DOUB Y N 9 J2H C22 N23 SING Y N 10 J2H C21 C20 SING Y N 11 J2H N23 C18 DOUB Y N 12 J2H C28 N27 SING N N 13 J2H C20 N19 DOUB Y N 14 J2H C37 C36 SING N N 15 J2H C37 C24 SING N N 16 J2H C36 N27 SING N N 17 J2H C18 N19 SING Y N 18 J2H C18 N17 SING N N 19 J2H N27 C26 SING N N 20 J2H N17 C24 SING N N 21 J2H N17 C16 SING N N 22 J2H C24 C25 SING N N 23 J2H C24 C02 SING N N 24 J2H C26 C25 SING N N 25 J2H C16 O38 DOUB N N 26 J2H C16 N03 SING N N 27 J2H C02 N03 SING N N 28 J2H C02 O01 DOUB N N 29 J2H N03 C04 SING N N 30 J2H C15 C04 DOUB Y N 31 J2H C15 C14 SING Y N 32 J2H C04 C05 SING Y N 33 J2H C14 C07 DOUB Y N 34 J2H C05 C06 DOUB Y N 35 J2H C07 C06 SING Y N 36 J2H C07 C08 SING N N 37 J2H C09 C08 DOUB Y N 38 J2H C09 C10 SING Y N 39 J2H C08 C13 SING Y N 40 J2H C10 C11 DOUB Y N 41 J2H C13 C12 DOUB Y N 42 J2H C11 C12 SING Y N 43 J2H C10 H101 SING N N 44 J2H C11 H111 SING N N 45 J2H C12 H121 SING N N 46 J2H C13 H131 SING N N 47 J2H C14 H141 SING N N 48 J2H C36 H361 SING N N 49 J2H C36 H362 SING N N 50 J2H C37 H371 SING N N 51 J2H C37 H372 SING N N 52 J2H C25 H252 SING N N 53 J2H C25 H251 SING N N 54 J2H C15 H151 SING N N 55 J2H C05 H051 SING N N 56 J2H C06 H061 SING N N 57 J2H C09 H091 SING N N 58 J2H C20 H201 SING N N 59 J2H C21 H211 SING N N 60 J2H C22 H221 SING N N 61 J2H C26 H261 SING N N 62 J2H C26 H262 SING N N 63 J2H C28 H282 SING N N 64 J2H C28 H281 SING N N 65 J2H C31 H311 SING N N 66 J2H C32 H321 SING N N 67 J2H C33 H331 SING N N 68 J2H C35 H352 SING N N 69 J2H C35 H353 SING N N 70 J2H C35 H351 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J2H InChI InChI 1.03 "InChI=1S/C30H28N6O2/c1-22-7-5-16-31-26(22)21-34-19-14-30(15-20-34)27(37)35(29(38)36(30)28-32-17-6-18-33-28)25-12-10-24(11-13-25)23-8-3-2-4-9-23/h2-13,16-18H,14-15,19-21H2,1H3" J2H InChIKey InChI 1.03 FIMHRJKSKVXMEB-UHFFFAOYSA-N J2H SMILES_CANONICAL CACTVS 3.385 "Cc1cccnc1CN2CCC3(CC2)N(C(=O)N(c4ccc(cc4)c5ccccc5)C3=O)c6ncccn6" J2H SMILES CACTVS 3.385 "Cc1cccnc1CN2CCC3(CC2)N(C(=O)N(c4ccc(cc4)c5ccccc5)C3=O)c6ncccn6" J2H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cccnc1CN2CCC3(CC2)C(=O)N(C(=O)N3c4ncccn4)c5ccc(cc5)c6ccccc6" J2H SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cccnc1CN2CCC3(CC2)C(=O)N(C(=O)N3c4ncccn4)c5ccc(cc5)c6ccccc6" # _pdbx_chem_comp_identifier.comp_id J2H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "8-[(3-methylpyridin-2-yl)methyl]-3-(4-phenylphenyl)-1-pyrimidin-2-yl-1,3,8-triazaspiro[4.5]decane-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J2H "Create component" 2019-01-14 EBI J2H "Initial release" 2020-02-05 RCSB ##