data_J3B # _chem_comp.id J3B _chem_comp.name "(3~{R})-~{N}-(4-carbamimidoylphenyl)-2-oxidanylidene-piperidine-3-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-01-17 _chem_comp.pdbx_modified_date 2019-02-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 260.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J3B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6QH9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J3B C10 C1 C 0 1 Y N N -22.736 1.105 -23.697 -1.329 -0.586 0.405 C10 J3B 1 J3B C12 C2 C 0 1 Y N N -23.341 1.152 -22.441 -0.942 0.550 -0.298 C12 J3B 2 J3B C15 C3 C 0 1 N N N -24.234 -0.405 -20.700 1.293 -0.184 -0.629 C15 J3B 3 J3B N01 N1 N 0 1 N N N -23.909 5.710 -24.549 -5.455 -1.429 0.944 N01 J3B 4 J3B C04 C4 C 0 1 N N N -23.189 4.642 -24.920 -5.070 -0.298 0.256 C04 J3B 5 J3B N05 N2 N 0 1 N N N -22.528 4.699 -26.033 -5.971 0.513 -0.221 N05 J3B 6 J3B C07 C5 C 0 1 Y N N -23.241 3.442 -24.062 -3.633 -0.004 0.060 C07 J3B 7 J3B C08 C6 C 0 1 Y N N -22.679 2.239 -24.490 -2.666 -0.864 0.584 C08 J3B 8 J3B N13 N3 N 0 1 N N N -23.427 -0.089 -21.747 0.413 0.826 -0.484 N13 J3B 9 J3B O16 O1 O 0 1 N N N -24.972 0.398 -20.134 0.897 -1.329 -0.695 O16 J3B 10 J3B C17 C7 C 0 1 N N R -24.200 -1.868 -20.247 2.769 0.108 -0.709 C17 J3B 11 J3B C19 C8 C 0 1 N N N -23.340 -2.194 -19.012 3.539 -1.205 -0.872 C19 J3B 12 J3B C22 C9 C 0 1 N N N -23.678 -3.594 -18.500 5.033 -0.918 -0.675 C22 J3B 13 J3B C25 C10 C 0 1 N N N -23.514 -4.627 -19.607 5.269 -0.528 0.785 C25 J3B 14 J3B N28 N4 N 0 1 N N N -23.986 -4.171 -20.933 4.342 0.521 1.188 N28 J3B 15 J3B C30 C11 C 0 1 N N N -24.266 -2.919 -21.343 3.209 0.806 0.545 C30 J3B 16 J3B O31 O2 O 0 1 N N N -24.630 -2.678 -22.492 2.495 1.676 0.998 O31 J3B 17 J3B C32 C12 C 0 1 Y N N -23.932 2.349 -22.018 -1.903 1.411 -0.817 C32 J3B 18 J3B C34 C13 C 0 1 Y N N -23.873 3.481 -22.819 -3.242 1.141 -0.636 C34 J3B 19 J3B H1 H1 H 0 1 N N N -22.310 0.179 -24.053 -0.581 -1.253 0.806 H1 J3B 20 J3B H2 H2 H 0 1 N N N -24.458 5.677 -23.714 -4.784 -2.032 1.299 H2 J3B 21 J3B H3 H3 H 0 1 N N N -23.897 6.540 -25.107 -6.397 -1.621 1.072 H3 J3B 22 J3B H4 H4 H 0 1 N N N -22.062 3.838 -26.237 -5.701 1.309 -0.705 H4 J3B 23 J3B H5 H5 H 0 1 N N N -22.193 2.191 -25.453 -2.966 -1.747 1.130 H5 J3B 24 J3B H6 H6 H 0 1 N N N -22.820 -0.816 -22.069 0.722 1.746 -0.508 H6 J3B 25 J3B H7 H7 H 0 1 N N N -25.208 -1.965 -19.816 2.965 0.751 -1.568 H7 J3B 26 J3B H8 H8 H 0 1 N N N -22.276 -2.153 -19.287 3.202 -1.923 -0.124 H8 J3B 27 J3B H9 H9 H 0 1 N N N -23.543 -1.457 -18.221 3.371 -1.608 -1.870 H9 J3B 28 J3B H10 H10 H 0 1 N N N -24.719 -3.607 -18.145 5.611 -1.811 -0.913 H10 J3B 29 J3B H11 H11 H 0 1 N N N -23.004 -3.846 -17.668 5.338 -0.101 -1.328 H11 J3B 30 J3B H12 H12 H 0 1 N N N -24.083 -5.526 -19.328 5.122 -1.402 1.419 H12 J3B 31 J3B H13 H13 H 0 1 N N N -22.447 -4.880 -19.688 6.291 -0.167 0.900 H13 J3B 32 J3B H14 H14 H 0 1 N N N -24.114 -4.889 -21.617 4.563 1.046 1.974 H14 J3B 33 J3B H15 H15 H 0 1 N N N -24.436 2.392 -21.064 -1.600 2.293 -1.362 H15 J3B 34 J3B H16 H16 H 0 1 N N N -24.321 4.402 -22.476 -3.988 1.807 -1.042 H16 J3B 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J3B N05 C04 DOUB N N 1 J3B C04 N01 SING N N 2 J3B C04 C07 SING N N 3 J3B C08 C07 DOUB Y N 4 J3B C08 C10 SING Y N 5 J3B C07 C34 SING Y N 6 J3B C10 C12 DOUB Y N 7 J3B C34 C32 DOUB Y N 8 J3B O31 C30 DOUB N N 9 J3B C12 C32 SING Y N 10 J3B C12 N13 SING N N 11 J3B N13 C15 SING N N 12 J3B C30 N28 SING N N 13 J3B C30 C17 SING N N 14 J3B N28 C25 SING N N 15 J3B C15 C17 SING N N 16 J3B C15 O16 DOUB N N 17 J3B C17 C19 SING N N 18 J3B C25 C22 SING N N 19 J3B C19 C22 SING N N 20 J3B C10 H1 SING N N 21 J3B N01 H2 SING N N 22 J3B N01 H3 SING N N 23 J3B N05 H4 SING N N 24 J3B C08 H5 SING N N 25 J3B N13 H6 SING N N 26 J3B C17 H7 SING N N 27 J3B C19 H8 SING N N 28 J3B C19 H9 SING N N 29 J3B C22 H10 SING N N 30 J3B C22 H11 SING N N 31 J3B C25 H12 SING N N 32 J3B C25 H13 SING N N 33 J3B N28 H14 SING N N 34 J3B C32 H15 SING N N 35 J3B C34 H16 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J3B InChI InChI 1.03 "InChI=1S/C13H16N4O2/c14-11(15)8-3-5-9(6-4-8)17-13(19)10-2-1-7-16-12(10)18/h3-6,10H,1-2,7H2,(H3,14,15)(H,16,18)(H,17,19)/t10-/m1/s1" J3B InChIKey InChI 1.03 IZWNURHHAQZXMJ-SNVBAGLBSA-N J3B SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1ccc(NC(=O)[C@@H]2CCCNC2=O)cc1" J3B SMILES CACTVS 3.385 "NC(=N)c1ccc(NC(=O)[CH]2CCCNC2=O)cc1" J3B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(/c1ccc(cc1)NC(=O)[C@@H]2CCCNC2=O)\N" J3B SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1C(=N)N)NC(=O)C2CCCNC2=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J3B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{R})-~{N}-(4-carbamimidoylphenyl)-2-oxidanylidene-piperidine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J3B "Create component" 2019-01-17 EBI J3B "Initial release" 2019-02-06 RCSB #