data_J3D # _chem_comp.id J3D _chem_comp.name N-carboxy-L-cysteine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H7 N O4 S" _chem_comp.mon_nstd_parent_comp_id CYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 165.168 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J3D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EAX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J3D C01 C01 C 0 1 N N N N N N -4.916 151.220 8.709 -0.444 -1.414 0.432 C01 J3D 1 J3D S02 S02 S 0 1 N N N N N N -5.853 152.776 8.378 1.281 -1.924 0.198 S02 J3D 2 J3D CA C03 C 0 1 N N R Y N N -3.957 150.648 7.635 -0.679 -0.074 -0.268 C03 J3D 3 J3D N N04 N 0 1 N N N Y Y N -4.366 149.321 7.125 0.212 0.938 0.304 N04 J3D 4 J3D C05 C05 C 0 1 N N N N N N -3.471 148.441 6.337 1.472 1.065 -0.157 C05 J3D 5 J3D O06 O06 O 0 1 N N N N N N -3.929 147.353 5.852 1.869 0.340 -1.048 O06 J3D 6 J3D O07 O07 O 0 1 N N N N N N -2.278 148.757 6.148 2.290 1.996 0.368 O07 J3D 7 J3D C C08 C 0 1 N N N Y N Y -2.610 150.486 8.329 -2.112 0.350 -0.074 C08 J3D 8 J3D O O09 O 0 1 N N N Y N Y -1.587 151.136 7.981 -2.364 1.391 0.485 O09 J3D 9 J3D OXT O10 O 0 1 N N N Y N Y -2.517 149.661 9.257 -3.109 -0.429 -0.522 O10 J3D 10 J3D H011 H011 H 0 0 N N N N N N -5.662 150.439 8.917 -1.107 -2.168 0.006 H011 J3D 11 J3D H012 H012 H 0 0 N N N N N N -4.312 151.399 9.611 -0.650 -1.309 1.497 H012 J3D 12 J3D H021 H021 H 0 0 N N N N N N -6.526 152.926 9.480 1.341 -3.097 0.855 H021 J3D 13 J3D HA H031 H 0 0 N N N Y N N -3.865 151.366 6.806 -0.473 -0.180 -1.334 H031 J3D 14 J3D H H041 H 0 0 N N N Y Y N -5.293 149.002 7.322 -0.105 1.518 1.014 H041 J3D 15 J3D H1 H1 H 0 1 N N N N N N -1.851 148.086 5.628 3.185 2.049 0.005 H1 J3D 16 J3D HXT H2 H 0 1 N N N Y N Y -1.624 149.649 9.582 -4.012 -0.116 -0.374 H2 J3D 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J3D O06 C05 DOUB N N 1 J3D O07 C05 SING N N 2 J3D C05 N SING N N 3 J3D N CA SING N N 4 J3D CA C SING N N 5 J3D CA C01 SING N N 6 J3D O C DOUB N N 7 J3D C OXT SING N N 8 J3D S02 C01 SING N N 9 J3D C01 H011 SING N N 10 J3D C01 H012 SING N N 11 J3D S02 H021 SING N N 12 J3D CA HA SING N N 13 J3D N H SING N N 14 J3D O07 H1 SING N N 15 J3D OXT HXT SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J3D SMILES ACDLabs 12.01 "C(S)C(C(O)=O)NC(=O)O" J3D InChI InChI 1.03 "InChI=1S/C4H7NO4S/c6-3(7)2(1-10)5-4(8)9/h2,5,10H,1H2,(H,6,7)(H,8,9)/t2-/m0/s1" J3D InChIKey InChI 1.03 ZJMMJMHTXLTBFW-REOHCLBHSA-N J3D SMILES_CANONICAL CACTVS 3.385 "OC(=O)N[C@@H](CS)C(O)=O" J3D SMILES CACTVS 3.385 "OC(=O)N[CH](CS)C(O)=O" J3D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@@H](C(=O)O)NC(=O)O)S" J3D SMILES "OpenEye OEToolkits" 2.0.6 "C(C(C(=O)O)NC(=O)O)S" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J3D "SYSTEMATIC NAME" ACDLabs 12.01 N-carboxy-L-cysteine J3D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-(carboxyamino)-3-sulfanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J3D "Create component" 2018-08-06 RCSB J3D "Initial release" 2019-08-07 RCSB J3D "Modify backbone" 2023-11-03 PDBE J3D "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id J3D _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type Carboxylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #