data_J4F # _chem_comp.id J4F _chem_comp.name "3-[4-[[1-[(4-chloranyl-1H-indol-2-yl)methyl]-3,7-dimethyl-2,6-bis(oxidanylidene)purin-8-yl]amino]-6-methyl-pyrimidin-2-yl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 Cl N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-(4-((1-((4-chloro-1H-indol-2-yl)methyl)-3,7-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl)amino)-6-methylpyrimidin-2-yl)propanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-05 _chem_comp.pdbx_modified_date 2021-08-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.944 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J4F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EHN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J4F O2 O1 O 0 1 N N N -52.383 16.341 -4.554 1.848 1.915 -1.748 O2 J4F 1 J4F N3 N1 N 0 1 N N N -52.779 18.288 -3.638 0.018 0.868 -1.084 N3 J4F 2 J4F C4 C1 C 0 1 Y N N -53.499 19.032 -2.808 -0.646 -0.327 -0.854 C4 J4F 3 J4F N7 N2 N 0 1 Y N N -55.031 19.462 -1.392 -0.876 -2.538 -0.799 N7 J4F 4 J4F C5 C2 C 0 1 Y N N -54.508 18.476 -2.110 0.015 -1.522 -1.114 C5 J4F 5 J4F C6 C3 C 0 1 N N N -54.795 17.158 -2.233 1.334 -1.485 -1.602 C6 J4F 6 J4F C8 C4 C 0 1 Y N N -54.332 20.580 -1.662 -2.017 -1.939 -0.369 C8 J4F 7 J4F C2 C5 C 0 1 N N N -53.065 16.986 -3.771 1.281 0.858 -1.552 C2 J4F 8 J4F N1 N3 N 0 1 N N N -54.070 16.414 -3.075 1.929 -0.292 -1.806 N1 J4F 9 J4F O6 O2 O 0 1 N N N -55.708 16.592 -1.622 1.933 -2.520 -1.836 O6 J4F 10 J4F N9 N4 N 0 1 Y N N -53.380 20.325 -2.530 -1.866 -0.631 -0.408 N9 J4F 11 J4F CAA C6 C 0 1 Y N N -53.407 14.104 -2.419 4.266 -0.250 -1.154 CAA J4F 12 J4F CAB C7 C 0 1 Y N N -52.794 13.005 -2.848 4.811 0.846 -0.603 CAB J4F 13 J4F CAD C8 C 0 1 N N N -54.385 14.965 -3.233 3.303 -0.248 -2.313 CAD J4F 14 J4F CAK C9 C 0 1 N N N -51.669 18.911 -4.402 -0.657 2.142 -0.825 CAK J4F 15 J4F CAQ C10 C 0 1 N N N -56.187 19.278 -0.471 -0.633 -3.979 -0.908 CAQ J4F 16 J4F CAS C11 C 0 1 Y N N -53.790 22.860 -1.280 -4.225 -1.878 0.562 CAS J4F 17 J4F CAU C12 C 0 1 Y N N -51.924 23.965 -2.161 -5.217 0.138 1.058 CAU J4F 18 J4F CAW C13 C 0 1 Y N N -53.321 25.139 -0.730 -6.375 -1.778 1.587 CAW J4F 19 J4F CAX C14 C 0 1 Y N N -54.127 24.018 -0.586 -5.338 -2.539 1.082 CAX J4F 20 J4F CAY C15 C 0 1 N N N -53.653 26.417 0.010 -7.600 -2.443 2.161 CAY J4F 21 J4F CAZ C16 C 0 1 N N N -50.693 23.918 -3.075 -5.156 1.643 1.045 CAZ J4F 22 J4F CBA C17 C 0 1 N N N -51.196 23.777 -4.529 -5.759 2.166 -0.261 CBA J4F 23 J4F CBB C18 C 0 1 N N N -50.811 25.048 -5.297 -5.699 3.672 -0.274 CBB J4F 24 J4F CBE C19 C 0 1 Y N N -52.199 13.439 -0.784 5.590 -1.013 0.494 CBE J4F 25 J4F CBF C20 C 0 1 Y N N -52.046 12.595 -1.819 5.685 0.391 0.481 CBF J4F 26 J4F CBG C21 C 0 1 Y N N -51.237 11.553 -1.713 6.508 1.043 1.403 CBG J4F 27 J4F CBH C22 C 0 1 Y N N -50.536 11.318 -0.547 7.221 0.304 2.320 CBH J4F 28 J4F CBI C23 C 0 1 Y N N -50.697 12.182 0.524 7.127 -1.081 2.332 CBI J4F 29 J4F CBJ C24 C 0 1 Y N N -51.556 13.255 0.381 6.320 -1.738 1.429 CBJ J4F 30 J4F NAC N5 N 0 1 Y N N -53.054 14.385 -1.166 4.720 -1.370 -0.512 NAC J4F 31 J4F NAR N6 N 0 1 N N N -54.584 21.778 -1.119 -3.157 -2.597 0.043 NAR J4F 32 J4F NAT N7 N 0 1 Y N N -52.698 22.870 -2.055 -4.205 -0.548 0.567 NAT J4F 33 J4F NAV N8 N 0 1 Y N N -52.238 25.099 -1.517 -6.280 -0.457 1.561 NAV J4F 34 J4F OBC O3 O 0 1 N N N -50.429 24.898 -6.480 -5.223 4.266 0.664 OBC J4F 35 J4F OBD O4 O 0 1 N N N -50.885 26.133 -4.679 -6.174 4.353 -1.329 OBD J4F 36 J4F CL CL1 CL 0 0 N N N -51.089 10.532 -3.050 6.630 2.774 1.392 CL J4F 37 J4F H1 H1 H 0 1 N N N -52.882 12.542 -3.820 4.638 1.869 -0.902 H1 J4F 38 J4F H2 H2 H 0 1 N N N -55.410 14.778 -2.881 3.487 -1.120 -2.940 H2 J4F 39 J4F H3 H3 H 0 1 N N N -54.307 14.693 -4.296 3.444 0.659 -2.901 H3 J4F 40 J4F H4 H4 H 0 1 N N N -51.603 19.979 -4.149 -0.471 2.448 0.205 H4 J4F 41 J4F H5 H5 H 0 1 N N N -50.722 18.414 -4.144 -0.271 2.902 -1.505 H5 J4F 42 J4F H6 H6 H 0 1 N N N -51.859 18.801 -5.480 -1.729 2.024 -0.982 H6 J4F 43 J4F H7 H7 H 0 1 N N N -56.433 20.238 0.006 -0.216 -4.349 0.028 H7 J4F 44 J4F H8 H8 H 0 1 N N N -57.056 18.919 -1.041 -1.572 -4.491 -1.116 H8 J4F 45 J4F H9 H9 H 0 1 N N N -55.926 18.540 0.302 0.071 -4.168 -1.719 H9 J4F 46 J4F H10 H10 H 0 1 N N N -54.998 24.044 0.052 -5.388 -3.618 1.090 H10 J4F 47 J4F H11 H11 H 0 1 N N N -52.900 27.183 -0.225 -7.453 -2.617 3.227 H11 J4F 48 J4F H12 H12 H 0 1 N N N -54.647 26.773 -0.300 -8.466 -1.799 2.013 H12 J4F 49 J4F H13 H13 H 0 1 N N N -53.654 26.224 1.093 -7.766 -3.396 1.657 H13 J4F 50 J4F H14 H14 H 0 1 N N N -50.062 23.056 -2.811 -5.722 2.037 1.889 H14 J4F 51 J4F H15 H15 H 0 1 N N N -50.111 24.845 -2.968 -4.118 1.966 1.120 H15 J4F 52 J4F H16 H16 H 0 1 N N N -52.289 23.656 -4.534 -5.193 1.773 -1.105 H16 J4F 53 J4F H17 H17 H 0 1 N N N -50.728 22.901 -5.001 -6.797 1.844 -0.337 H17 J4F 54 J4F H18 H18 H 0 1 N N N -49.870 10.471 -0.471 7.859 0.804 3.034 H18 J4F 55 J4F H19 H19 H 0 1 N N N -50.164 12.021 1.449 7.692 -1.649 3.057 H19 J4F 56 J4F H20 H20 H 0 1 N N N -51.709 13.941 1.201 6.255 -2.816 1.448 H20 J4F 57 J4F H21 H21 H 0 1 N N N -53.371 15.159 -0.617 4.467 -2.280 -0.732 H21 J4F 58 J4F H22 H22 H 0 1 N N N -55.408 21.878 -0.562 -3.212 -3.563 -0.030 H22 J4F 59 J4F H23 H23 H 0 1 N N N -50.604 26.841 -5.247 -6.113 5.318 -1.292 H23 J4F 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J4F OBC CBB DOUB N N 1 J4F CBB OBD SING N N 2 J4F CBB CBA SING N N 3 J4F O2 C2 DOUB N N 4 J4F CBA CAZ SING N N 5 J4F CAK N3 SING N N 6 J4F C2 N3 SING N N 7 J4F C2 N1 SING N N 8 J4F N3 C4 SING N N 9 J4F CAD N1 SING N N 10 J4F CAD CAA SING N N 11 J4F N1 C6 SING N N 12 J4F CAZ CAU SING N N 13 J4F CL CBG SING N N 14 J4F CAB CAA DOUB Y N 15 J4F CAB CBF SING Y N 16 J4F C4 N9 SING Y N 17 J4F C4 C5 DOUB Y N 18 J4F N9 C8 DOUB Y N 19 J4F CAA NAC SING Y N 20 J4F C6 C5 SING N N 21 J4F C6 O6 DOUB N N 22 J4F CAU NAT DOUB Y N 23 J4F CAU NAV SING Y N 24 J4F C5 N7 SING Y N 25 J4F NAT CAS SING Y N 26 J4F CBF CBG DOUB Y N 27 J4F CBF CBE SING Y N 28 J4F CBG CBH SING Y N 29 J4F C8 N7 SING Y N 30 J4F C8 NAR SING N N 31 J4F NAV CAW DOUB Y N 32 J4F N7 CAQ SING N N 33 J4F CAS NAR SING N N 34 J4F CAS CAX DOUB Y N 35 J4F NAC CBE SING Y N 36 J4F CBE CBJ DOUB Y N 37 J4F CAW CAX SING Y N 38 J4F CAW CAY SING N N 39 J4F CBH CBI DOUB Y N 40 J4F CBJ CBI SING Y N 41 J4F CAB H1 SING N N 42 J4F CAD H2 SING N N 43 J4F CAD H3 SING N N 44 J4F CAK H4 SING N N 45 J4F CAK H5 SING N N 46 J4F CAK H6 SING N N 47 J4F CAQ H7 SING N N 48 J4F CAQ H8 SING N N 49 J4F CAQ H9 SING N N 50 J4F CAX H10 SING N N 51 J4F CAY H11 SING N N 52 J4F CAY H12 SING N N 53 J4F CAY H13 SING N N 54 J4F CAZ H14 SING N N 55 J4F CAZ H15 SING N N 56 J4F CBA H16 SING N N 57 J4F CBA H17 SING N N 58 J4F CBH H18 SING N N 59 J4F CBI H19 SING N N 60 J4F CBJ H20 SING N N 61 J4F NAC H21 SING N N 62 J4F NAR H22 SING N N 63 J4F OBD H23 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J4F InChI InChI 1.03 "InChI=1S/C24H23ClN8O4/c1-12-9-18(28-17(26-12)7-8-19(34)35)29-23-30-21-20(31(23)2)22(36)33(24(37)32(21)3)11-13-10-14-15(25)5-4-6-16(14)27-13/h4-6,9-10,27H,7-8,11H2,1-3H3,(H,34,35)(H,26,28,29,30)" J4F InChIKey InChI 1.03 ILEKCBRCJDWEIR-UHFFFAOYSA-N J4F SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(Cc2[nH]c3cccc(Cl)c3c2)C(=O)c4n(C)c(Nc5cc(C)nc(CCC(O)=O)n5)nc14" J4F SMILES CACTVS 3.385 "CN1C(=O)N(Cc2[nH]c3cccc(Cl)c3c2)C(=O)c4n(C)c(Nc5cc(C)nc(CCC(O)=O)n5)nc14" J4F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)CCC(=O)O)Nc2nc3c(n2C)C(=O)N(C(=O)N3C)Cc4cc5c([nH]4)cccc5Cl" J4F SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)CCC(=O)O)Nc2nc3c(n2C)C(=O)N(C(=O)N3C)Cc4cc5c([nH]4)cccc5Cl" # _pdbx_chem_comp_identifier.comp_id J4F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[4-[[1-[(4-chloranyl-1~{H}-indol-2-yl)methyl]-3,7-dimethyl-2,6-bis(oxidanylidene)purin-8-yl]amino]-6-methyl-pyrimidin-2-yl]propanoic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id J4F _pdbx_chem_comp_synonyms.name "3-(4-((1-((4-chloro-1H-indol-2-yl)methyl)-3,7-dimethyl-2,6-dioxo-2,3,6,7-tetrahydro-1H-purin-8-yl)amino)-6-methylpyrimidin-2-yl)propanoic acid" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J4F "Create component" 2021-04-05 PDBJ J4F "Initial release" 2021-08-11 RCSB ##