data_J50 # _chem_comp.id J50 _chem_comp.name "8-(2-chloroacetyl)-4-((5-phenylfuran-2-yl)methyl)-1-thia-4,8-diazaspiro[4.5]decan-3-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H21 Cl N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 404.910 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J50 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EKV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J50 C17 C1 C 0 1 Y N N N N N -38.341 11.105 18.726 -4.498 1.183 0.022 C17 J50 1 J50 C12 C2 C 0 1 Y N N N N N -39.790 12.336 15.522 -1.060 0.163 -0.512 C12 J50 2 J50 C14 C3 C 0 1 Y N N N N N -38.997 11.320 17.344 -3.039 0.950 0.023 C14 J50 3 J50 C15 C4 C 0 1 Y N N N N N -39.503 10.343 16.496 -2.136 1.545 0.847 C15 J50 4 J50 C16 C5 C 0 1 Y N N N N N -39.988 10.968 15.373 -0.870 1.031 0.501 C16 J50 5 J50 C19 C6 C 0 1 Y N N N N N -37.465 12.116 21.031 -6.428 2.293 0.923 C19 J50 6 J50 C20 C7 C 0 1 Y N N N N N -37.034 10.709 21.478 -7.233 1.620 0.021 C20 J50 7 J50 C21 C8 C 0 1 Y N N N N N -37.247 9.501 20.552 -6.678 0.726 -0.877 C21 J50 8 J50 C22 C9 C 0 1 Y N N N N N -37.898 9.699 19.174 -5.317 0.503 -0.882 C22 J50 9 J50 C23 C10 C 0 1 N N N N N N -41.179 19.365 16.387 4.037 1.184 -0.427 C23 J50 10 J50 C24 C11 C 0 1 N N N N N N -41.416 19.573 17.900 3.990 2.440 0.405 C24 J50 11 J50 C11 C12 C 0 1 N N N N N N -40.167 13.455 14.522 0.019 -0.629 -1.204 C11 J50 12 J50 C18 C13 C 0 1 Y N N N N N -38.119 12.312 19.655 -5.065 2.080 0.929 C18 J50 13 J50 C01 C14 C 0 1 N N N N N N -39.851 18.120 14.478 3.032 -0.905 -1.214 C01 J50 14 J50 C03 C15 C 0 1 N N N N N N -39.405 17.544 16.883 1.816 0.598 0.419 C03 J50 15 J50 C04 C16 C 0 1 N N N N N N -38.922 16.156 16.457 1.561 -0.611 1.328 C04 J50 16 J50 C05 C17 C 0 1 N N N N N N -38.977 15.785 15.021 1.477 -1.873 0.479 C05 J50 17 J50 C06 C18 C 0 1 N N N N N N -39.832 16.632 14.147 2.768 -2.103 -0.295 C06 J50 18 J50 C08 C19 C 0 1 N N N N N N -36.650 15.298 13.833 -0.027 -4.094 0.356 C08 J50 19 J50 C09 C20 C 0 1 N N N N N N -37.595 14.062 13.690 -0.441 -2.914 -0.502 C09 J50 20 J50 N02 N1 N 0 1 N N N N N N -40.207 18.380 15.917 2.999 0.323 -0.408 N02 J50 21 J50 N10 N2 N 0 1 N N N N N N -39.027 14.391 14.437 0.323 -1.829 -0.420 N10 J50 22 J50 O13 O1 O 0 1 Y N N N N N -39.181 12.541 16.734 -2.371 0.116 -0.798 O13 J50 23 J50 O25 O2 O 0 1 N N N N N N -41.781 20.018 15.609 5.008 0.947 -1.114 O25 J50 24 J50 O26 O3 O 0 1 N N N N N N -37.372 13.027 13.152 -1.416 -2.958 -1.222 O26 J50 25 J50 S07 S1 S 0 1 N N N N N N -37.346 16.361 14.928 1.133 -3.318 1.553 S07 J50 26 J50 H1 H1 H 0 1 N N N N N N -39.513 9.280 16.686 -2.348 2.272 1.617 H1 J50 27 J50 H2 H2 H 0 1 N N N N N N -40.443 10.482 14.523 0.073 1.285 0.961 H2 J50 28 J50 H3 H3 H 0 1 N N N N N N -37.308 12.963 21.682 -6.868 2.990 1.621 H3 J50 29 J50 H4 H4 H 0 1 N N N N N N -36.579 10.569 22.448 -8.299 1.791 0.020 H4 J50 30 J50 H5 H5 H 0 1 N N N N N N -36.940 8.515 20.869 -7.312 0.203 -1.579 H5 J50 31 J50 H6 H6 H 0 1 N N N N N N -38.045 8.852 18.520 -4.885 -0.195 -1.583 H6 J50 32 J50 H7 H7 H 0 1 N N N N N N -42.473 19.382 18.136 3.138 3.047 0.098 H7 J50 33 J50 H8 H8 H 0 1 N N N N N N -40.781 18.879 18.471 3.887 2.175 1.457 H8 J50 34 J50 CL1 CL1 CL 0 0 N N N N N N -41.168 20.581 18.160 5.512 3.376 0.167 CL1 J50 35 J50 H10 H10 H 0 1 N N N N N N -40.368 13.020 13.532 -0.324 -0.921 -2.196 H10 J50 36 J50 H11 H11 H 0 1 N N N N N N -41.062 13.987 14.877 0.917 -0.018 -1.295 H11 J50 37 J50 H12 H12 H 0 1 N N N N N N -38.424 13.299 19.339 -4.438 2.606 1.634 H12 J50 38 J50 H13 H13 H 0 1 N N N N N N -38.854 18.540 14.279 4.012 -1.010 -1.680 H13 J50 39 J50 H14 H14 H 0 1 N N N N N N -40.593 18.616 13.835 2.262 -0.858 -1.983 H14 J50 40 J50 H15 H15 H 0 1 N N N N N N -40.027 17.405 17.779 0.951 0.762 -0.223 H15 J50 41 J50 H16 H16 H 0 1 N N N N N N -38.510 18.128 17.145 1.994 1.483 1.030 H16 J50 42 J50 H17 H17 H 0 1 N N N N N N -37.872 16.069 16.772 2.377 -0.707 2.043 H17 J50 43 J50 H18 H18 H 0 1 N N N N N N -40.864 16.257 14.219 2.676 -3.008 -0.895 H18 J50 44 J50 H19 H19 H 0 1 N N N N N N -39.473 16.521 13.113 3.597 -2.214 0.405 H19 J50 45 J50 H20 H20 H 0 1 N N N N N N -35.666 14.974 14.202 -0.888 -4.520 0.871 H20 J50 46 J50 H21 H21 H 0 1 N N N N N N -36.532 15.792 12.857 0.481 -4.850 -0.243 H21 J50 47 J50 H22 H22 H 0 1 N N N N N N -39.531 15.421 17.004 0.622 -0.470 1.864 H22 J50 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J50 C17 C14 SING N N 1 J50 C17 C22 DOUB Y N 2 J50 C17 C18 SING Y N 3 J50 C12 C16 DOUB Y N 4 J50 C12 C11 SING N N 5 J50 C12 O13 SING Y N 6 J50 C14 C15 DOUB Y N 7 J50 C14 O13 SING Y N 8 J50 C15 C16 SING Y N 9 J50 C19 C20 SING Y N 10 J50 C19 C18 DOUB Y N 11 J50 C20 C21 DOUB Y N 12 J50 C21 C22 SING Y N 13 J50 C23 C24 SING N N 14 J50 C23 N02 SING N N 15 J50 C23 O25 DOUB N N 16 J50 C11 N10 SING N N 17 J50 C01 C06 SING N N 18 J50 C01 N02 SING N N 19 J50 C03 C04 SING N N 20 J50 C03 N02 SING N N 21 J50 C04 C05 SING N N 22 J50 C05 C06 SING N N 23 J50 C05 N10 SING N N 24 J50 C05 S07 SING N N 25 J50 C08 C09 SING N N 26 J50 C08 S07 SING N N 27 J50 C09 N10 SING N N 28 J50 C09 O26 DOUB N N 29 J50 C15 H1 SING N N 30 J50 C16 H2 SING N N 31 J50 C19 H3 SING N N 32 J50 C20 H4 SING N N 33 J50 C21 H5 SING N N 34 J50 C22 H6 SING N N 35 J50 C24 H7 SING N N 36 J50 C24 H8 SING N N 37 J50 C24 CL1 SING N N 38 J50 C11 H10 SING N N 39 J50 C11 H11 SING N N 40 J50 C18 H12 SING N N 41 J50 C01 H13 SING N N 42 J50 C01 H14 SING N N 43 J50 C03 H15 SING N N 44 J50 C03 H16 SING N N 45 J50 C04 H17 SING N N 46 J50 C06 H18 SING N N 47 J50 C06 H19 SING N N 48 J50 C08 H20 SING N N 49 J50 C08 H21 SING N N 50 J50 C04 H22 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J50 InChI InChI 1.03 "InChI=1S/C20H21ClN2O3S/c21-12-18(24)22-10-8-20(9-11-22)23(19(25)14-27-20)13-16-6-7-17(26-16)15-4-2-1-3-5-15/h1-7H,8-14H2" J50 InChIKey InChI 1.03 VQODBXUPRRJDAB-UHFFFAOYSA-N J50 SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)N1CCC2(CC1)SCC(=O)N2Cc3oc(cc3)c4ccccc4" J50 SMILES CACTVS 3.385 "ClCC(=O)N1CCC2(CC1)SCC(=O)N2Cc3oc(cc3)c4ccccc4" J50 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(o2)CN3C(=O)CSC34CCN(CC4)C(=O)CCl" J50 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(o2)CN3C(=O)CSC34CCN(CC4)C(=O)CCl" # _pdbx_chem_comp_identifier.comp_id J50 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(2-chloranylethanoyl)-4-[(5-phenylfuran-2-yl)methyl]-1-thia-4,8-diazaspiro[4.5]decan-3-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J50 "Create component" 2021-04-09 PDBJ J50 "Initial release" 2022-02-16 RCSB J50 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id J50 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C24 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #