data_J53 # _chem_comp.id J53 _chem_comp.name "(2S)-2-{4-butoxy-3-[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]benzoyl}amino)methyl]benzyl}butanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H43 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-07-24 _chem_comp.pdbx_modified_date 2012-08-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 517.699 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J53 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VJI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J53 O4 O4 O 0 1 N N N -18.622 19.042 -19.767 -6.021 2.103 -2.303 O4 J53 1 J53 C31 C31 C 0 1 N N N -18.929 18.469 -18.691 -5.104 2.703 -1.793 C31 J53 2 J53 O3 O3 O 0 1 N N N -19.163 17.242 -18.673 -4.019 3.014 -2.519 O3 J53 3 J53 C29 C29 C 0 1 N N S -19.026 19.242 -17.382 -5.182 3.107 -0.343 C29 J53 4 J53 C30 C30 C 0 1 N N N -20.193 20.241 -17.479 -5.963 4.418 -0.221 C30 J53 5 J53 C32 C32 C 0 1 N N N -19.963 21.334 -18.505 -5.910 4.909 1.227 C32 J53 6 J53 C26 C26 C 0 1 N N N -19.185 18.328 -16.122 -5.895 2.013 0.454 C26 J53 7 J53 C25 C25 C 0 1 Y N N -17.887 18.132 -15.338 -5.088 0.742 0.394 C25 J53 8 J53 C24 C24 C 0 1 Y N N -16.706 17.951 -16.043 -5.362 -0.205 -0.577 C24 J53 9 J53 C23 C23 C 0 1 Y N N -15.493 17.779 -15.395 -4.623 -1.371 -0.634 C23 J53 10 J53 C21 C21 C 0 1 Y N N -15.405 17.773 -14.006 -3.606 -1.592 0.283 C21 J53 11 J53 O1 O1 O 0 1 N N N -14.155 17.584 -13.414 -2.878 -2.738 0.229 O1 J53 12 J53 C34 C34 C 0 1 N N N -13.041 16.999 -14.128 -3.214 -3.672 -0.799 C34 J53 13 J53 C33 C33 C 0 1 N N N -11.883 16.543 -13.231 -2.294 -4.891 -0.702 C33 J53 14 J53 C28 C28 C 0 1 N N N -10.813 15.785 -14.034 -2.654 -5.891 -1.802 C28 J53 15 J53 C27 C27 C 0 1 N N N -9.826 15.030 -13.156 -1.734 -7.109 -1.705 C27 J53 16 J53 C22 C22 C 0 1 Y N N -17.821 18.128 -13.938 -4.072 0.526 1.306 C22 J53 17 J53 C20 C20 C 0 1 Y N N -16.588 17.966 -13.271 -3.333 -0.641 1.256 C20 J53 18 J53 C19 C19 C 0 1 N N N -16.543 17.961 -11.748 -2.230 -0.878 2.254 C19 J53 19 J53 N N N 0 1 N N N -16.631 19.281 -11.121 -0.938 -0.565 1.637 N J53 20 J53 C3 C3 C 0 1 N N N -15.598 19.937 -10.534 0.199 -0.704 2.347 C3 J53 21 J53 O2 O2 O 0 1 N N N -14.473 19.459 -10.484 0.153 -1.089 3.499 O2 J53 22 J53 C1 C1 C 0 1 Y N N -15.817 21.285 -9.866 1.502 -0.387 1.725 C1 J53 23 J53 C4 C4 C 0 1 Y N N -17.029 21.488 -9.218 1.558 0.061 0.404 C4 J53 24 J53 C8 C8 C 0 1 Y N N -17.317 22.677 -8.566 2.777 0.355 -0.170 C8 J53 25 J53 C6 C6 C 0 1 Y N N -16.397 23.725 -8.510 3.943 0.206 0.560 C6 J53 26 J53 C5 C5 C 0 1 Y N N -15.158 23.527 -9.151 3.895 -0.239 1.869 C5 J53 27 J53 C2 C2 C 0 1 Y N N -14.868 22.319 -9.814 2.682 -0.530 2.457 C2 J53 28 J53 C7 C7 C 0 1 N N N -16.780 25.004 -7.768 5.272 0.529 -0.075 C7 J53 29 J53 C41 C41 C 0 1 N N N -15.611 25.531 -6.926 6.393 0.281 0.936 C41 J53 30 J53 C37 C37 C 0 1 N N N -15.995 26.813 -6.164 7.742 0.609 0.292 C37 J53 31 J53 C40 C40 C 0 1 N N N -16.418 27.901 -7.149 7.953 -0.284 -0.932 C40 J53 32 J53 C39 C39 C 0 1 N N N -17.158 26.533 -5.219 7.758 2.077 -0.138 C39 J53 33 J53 C38 C38 C 0 1 N N N -18.346 26.030 -6.030 6.637 2.324 -1.149 C38 J53 34 J53 C9 C9 C 0 1 N N N -17.961 24.766 -6.805 5.288 1.997 -0.505 C9 J53 35 J53 C42 C42 C 0 1 N N N -18.760 27.109 -7.029 6.848 1.431 -2.374 C42 J53 36 J53 C12 C12 C 0 1 N N N -17.595 27.393 -7.981 6.831 -0.037 -1.943 C12 J53 37 J53 C11 C11 C 0 1 N N N -17.191 26.117 -8.738 5.483 -0.364 -1.299 C11 J53 38 J53 H1 H1 H 0 1 N N N -19.067 16.888 -19.549 -4.017 2.737 -3.446 H1 J53 39 J53 H2 H2 H 0 1 N N N -18.098 19.819 -17.258 -4.175 3.246 0.050 H2 J53 40 J53 H3 H3 H 0 1 N N N -20.334 20.710 -16.494 -5.518 5.168 -0.875 H3 J53 41 J53 H4 H4 H 0 1 N N N -21.103 19.689 -17.755 -7.000 4.251 -0.511 H4 J53 42 J53 H5 H5 H 0 1 N N N -20.831 22.010 -18.523 -6.369 5.895 1.293 H5 J53 43 J53 H6 H6 H 0 1 N N N -19.061 21.903 -18.238 -6.453 4.212 1.867 H6 J53 44 J53 H7 H7 H 0 1 N N N -19.830 20.882 -19.499 -4.872 4.968 1.554 H7 J53 45 J53 H8 H8 H 0 1 N N N -19.929 18.785 -15.453 -5.999 2.329 1.492 H8 J53 46 J53 H9 H9 H 0 1 N N N -19.544 17.342 -16.451 -6.882 1.837 0.027 H9 J53 47 J53 H10 H10 H 0 1 N N N -16.732 17.944 -17.123 -6.153 -0.032 -1.291 H10 J53 48 J53 H11 H11 H 0 1 N N N -14.596 17.647 -15.981 -4.838 -2.110 -1.392 H11 J53 49 J53 H12 H12 H 0 1 N N N -13.410 16.125 -14.685 -4.250 -3.989 -0.678 H12 J53 50 J53 H13 H13 H 0 1 N N N -12.654 17.748 -14.835 -3.090 -3.200 -1.773 H13 J53 51 J53 H14 H14 H 0 1 N N N -11.422 17.427 -12.766 -1.258 -4.574 -0.823 H14 J53 52 J53 H15 H15 H 0 1 N N N -12.278 15.880 -12.447 -2.418 -5.363 0.273 H15 J53 53 J53 H16 H16 H 0 1 N N N -11.317 15.063 -14.693 -3.690 -6.207 -1.681 H16 J53 54 J53 H17 H17 H 0 1 N N N -10.254 16.511 -14.644 -2.530 -5.419 -2.777 H17 J53 55 J53 H18 H18 H 0 1 N N N -9.091 14.512 -13.790 -1.990 -7.822 -2.489 H18 J53 56 J53 H19 H19 H 0 1 N N N -9.305 15.740 -12.496 -0.698 -6.793 -1.826 H19 J53 57 J53 H20 H20 H 0 1 N N N -10.368 14.292 -12.546 -1.858 -7.581 -0.731 H20 J53 58 J53 H21 H21 H 0 1 N N N -18.726 18.251 -13.362 -3.857 1.268 2.060 H21 J53 59 J53 H22 H22 H 0 1 N N N -17.385 17.354 -11.384 -2.382 -0.239 3.123 H22 J53 60 J53 H23 H23 H 0 1 N N N -15.595 17.498 -11.436 -2.239 -1.923 2.565 H23 J53 61 J53 H24 H24 H 0 1 N N N -17.522 19.735 -11.126 -0.901 -0.257 0.718 H24 J53 62 J53 H25 H25 H 0 1 N N N -17.766 20.699 -9.222 0.649 0.177 -0.167 H25 J53 63 J53 H26 H26 H 0 1 N N N -18.279 22.795 -8.089 2.822 0.702 -1.192 H26 J53 64 J53 H27 H27 H 0 1 N N N -14.419 24.314 -9.134 4.809 -0.353 2.433 H27 J53 65 J53 H28 H28 H 0 1 N N N -13.906 22.186 -10.287 2.645 -0.872 3.481 H28 J53 66 J53 H29 H29 H 0 1 N N N -15.317 24.759 -6.200 6.243 0.917 1.809 H29 J53 67 J53 H30 H30 H 0 1 N N N -14.763 25.751 -7.591 6.381 -0.765 1.243 H30 J53 68 J53 H31 H31 H 0 1 N N N -15.128 27.163 -5.584 8.541 0.433 1.013 H31 J53 69 J53 H32 H32 H 0 1 N N N -15.575 28.144 -7.813 8.914 -0.051 -1.391 H32 J53 70 J53 H33 H33 H 0 1 N N N -16.720 28.802 -6.595 7.941 -1.330 -0.625 H33 J53 71 J53 H34 H34 H 0 1 N N N -16.862 25.768 -4.486 7.608 2.713 0.734 H34 J53 72 J53 H35 H35 H 0 1 N N N -17.436 27.458 -4.692 8.719 2.310 -0.597 H35 J53 73 J53 H36 H36 H 0 1 N N N -19.187 25.808 -5.357 6.648 3.370 -1.456 H36 J53 74 J53 H37 H37 H 0 1 N N N -18.831 24.431 -7.389 4.489 2.173 -1.226 H37 J53 75 J53 H38 H38 H 0 1 N N N -17.678 23.983 -6.086 5.138 2.633 0.367 H38 J53 76 J53 H39 H39 H 0 1 N N N -19.024 28.029 -6.487 6.049 1.607 -3.094 H39 J53 77 J53 H40 H40 H 0 1 N N N -19.629 26.761 -7.606 7.809 1.664 -2.832 H40 J53 78 J53 H41 H41 H 0 1 N N N -17.894 28.166 -8.704 6.982 -0.673 -2.815 H41 J53 79 J53 H42 H42 H 0 1 N N N -18.044 25.771 -9.340 5.471 -1.410 -0.992 H42 J53 80 J53 H43 H43 H 0 1 N N N -16.344 26.346 -9.401 4.684 -0.188 -2.019 H43 J53 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J53 O4 C31 DOUB N N 1 J53 C31 O3 SING N N 2 J53 C31 C29 SING N N 3 J53 C32 C30 SING N N 4 J53 C30 C29 SING N N 5 J53 C29 C26 SING N N 6 J53 C26 C25 SING N N 7 J53 C24 C23 DOUB Y N 8 J53 C24 C25 SING Y N 9 J53 C23 C21 SING Y N 10 J53 C25 C22 DOUB Y N 11 J53 C34 O1 SING N N 12 J53 C34 C33 SING N N 13 J53 C28 C33 SING N N 14 J53 C28 C27 SING N N 15 J53 C21 O1 SING N N 16 J53 C21 C20 DOUB Y N 17 J53 C22 C20 SING Y N 18 J53 C20 C19 SING N N 19 J53 C19 N SING N N 20 J53 N C3 SING N N 21 J53 C3 O2 DOUB N N 22 J53 C3 C1 SING N N 23 J53 C1 C2 DOUB Y N 24 J53 C1 C4 SING Y N 25 J53 C2 C5 SING Y N 26 J53 C4 C8 DOUB Y N 27 J53 C5 C6 DOUB Y N 28 J53 C11 C12 SING N N 29 J53 C11 C7 SING N N 30 J53 C8 C6 SING Y N 31 J53 C6 C7 SING N N 32 J53 C12 C40 SING N N 33 J53 C12 C42 SING N N 34 J53 C7 C41 SING N N 35 J53 C7 C9 SING N N 36 J53 C40 C37 SING N N 37 J53 C42 C38 SING N N 38 J53 C41 C37 SING N N 39 J53 C9 C38 SING N N 40 J53 C37 C39 SING N N 41 J53 C38 C39 SING N N 42 J53 O3 H1 SING N N 43 J53 C29 H2 SING N N 44 J53 C30 H3 SING N N 45 J53 C30 H4 SING N N 46 J53 C32 H5 SING N N 47 J53 C32 H6 SING N N 48 J53 C32 H7 SING N N 49 J53 C26 H8 SING N N 50 J53 C26 H9 SING N N 51 J53 C24 H10 SING N N 52 J53 C23 H11 SING N N 53 J53 C34 H12 SING N N 54 J53 C34 H13 SING N N 55 J53 C33 H14 SING N N 56 J53 C33 H15 SING N N 57 J53 C28 H16 SING N N 58 J53 C28 H17 SING N N 59 J53 C27 H18 SING N N 60 J53 C27 H19 SING N N 61 J53 C27 H20 SING N N 62 J53 C22 H21 SING N N 63 J53 C19 H22 SING N N 64 J53 C19 H23 SING N N 65 J53 N H24 SING N N 66 J53 C4 H25 SING N N 67 J53 C8 H26 SING N N 68 J53 C5 H27 SING N N 69 J53 C2 H28 SING N N 70 J53 C41 H29 SING N N 71 J53 C41 H30 SING N N 72 J53 C37 H31 SING N N 73 J53 C40 H32 SING N N 74 J53 C40 H33 SING N N 75 J53 C39 H34 SING N N 76 J53 C39 H35 SING N N 77 J53 C38 H36 SING N N 78 J53 C9 H37 SING N N 79 J53 C9 H38 SING N N 80 J53 C42 H39 SING N N 81 J53 C42 H40 SING N N 82 J53 C12 H41 SING N N 83 J53 C11 H42 SING N N 84 J53 C11 H43 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J53 SMILES ACDLabs 12.01 "O=C(O)C(CC)Cc1cc(c(OCCCC)cc1)CNC(=O)c2ccc(cc2)C35CC4CC(CC(C3)C4)C5" J53 InChI InChI 1.03 "InChI=1S/C33H43NO4/c1-3-5-12-38-30-11-6-22(16-26(4-2)32(36)37)17-28(30)21-34-31(35)27-7-9-29(10-8-27)33-18-23-13-24(19-33)15-25(14-23)20-33/h6-11,17,23-26H,3-5,12-16,18-21H2,1-2H3,(H,34,35)(H,36,37)/t23-,24+,25-,26-,33-/m0/s1" J53 InChIKey InChI 1.03 DEFUFGZNKMSDHW-KVJCSQNRSA-N J53 SMILES_CANONICAL CACTVS 3.370 "CCCCOc1ccc(C[C@H](CC)C(O)=O)cc1CNC(=O)c2ccc(cc2)C34CC5CC(CC(C5)C3)C4" J53 SMILES CACTVS 3.370 "CCCCOc1ccc(C[CH](CC)C(O)=O)cc1CNC(=O)c2ccc(cc2)C34CC5CC(CC(C5)C3)C4" J53 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCOc1ccc(cc1CNC(=O)c2ccc(cc2)C34CC5CC(C3)CC(C5)C4)C[C@H](CC)C(=O)O" J53 SMILES "OpenEye OEToolkits" 1.7.6 "CCCCOc1ccc(cc1CNC(=O)c2ccc(cc2)C34CC5CC(C3)CC(C5)C4)CC(CC)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J53 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-{4-butoxy-3-[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]benzoyl}amino)methyl]benzyl}butanoic acid" J53 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[3-[[[4-(1-adamantyl)phenyl]carbonylamino]methyl]-4-butoxy-phenyl]methyl]butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J53 "Create component" 2012-07-24 PDBJ J53 "Initial release" 2012-08-24 RCSB #