data_J5A # _chem_comp.id J5A _chem_comp.name "N-[(4-bromothiophen-2-yl)methyl]acetamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H8 Br N O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 234.114 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J5A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5QIQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J5A C C1 C 0 1 N N N N N N 13.711 52.996 20.783 4.955 -1.200 -1.274 C J5A 1 J5A O O1 O 0 1 N N N N N N 14.012 55.328 20.529 4.711 -0.530 0.976 O J5A 2 J5A C1 C2 C 0 1 N N N N N N 13.621 54.306 21.241 4.178 -0.647 -0.107 C1 J5A 3 J5A C2 C3 C 0 1 N N N N N N 12.785 56.006 22.846 2.135 0.254 0.868 C2 J5A 4 J5A C3 C4 C 0 1 Y N N N N N 12.538 56.101 24.336 0.731 0.581 0.428 C3 J5A 5 J5A C4 C5 C 0 1 Y N N N N N 11.406 56.500 25.045 -0.303 -0.261 0.469 C4 J5A 6 J5A C5 C6 C 0 1 Y N N N N N 11.773 56.452 26.383 -1.500 0.263 0.011 C5 J5A 7 J5A C6 C7 C 0 1 Y N N N N N 13.040 55.996 26.677 -1.438 1.530 -0.401 C6 J5A 8 J5A BR BR1 BR 0 0 N N N N N N 10.632 56.848 27.974 -3.102 -0.742 -0.027 BR J5A 9 J5A S S1 S 0 1 Y N N N N N 14.001 55.638 25.261 0.204 2.132 -0.212 S J5A 10 J5A N N1 N 0 1 N N N N N N 13.092 54.654 22.433 2.890 -0.283 -0.266 N J5A 11 J5A H1 H1 H 0 1 N N N N N N 14.146 52.989 19.773 5.970 -1.436 -0.955 H1 J5A 12 J5A H2 H2 H 0 1 N N N N N N 14.351 52.414 21.462 4.469 -2.105 -1.638 H2 J5A 13 J5A H3 H3 H 0 1 N N N N N N 12.707 52.549 20.752 4.988 -0.458 -2.072 H3 J5A 14 J5A H4 H4 H 0 1 N N N N N N 13.631 56.658 22.584 2.621 1.159 1.232 H4 J5A 15 J5A H5 H5 H 0 1 N N N N N N 11.883 56.344 22.314 2.102 -0.487 1.667 H5 J5A 16 J5A H6 H6 H 0 1 N N N N N N 10.447 56.786 24.639 -0.213 -1.275 0.831 H6 J5A 17 J5A H7 H7 H 0 1 N N N N N N 13.404 55.872 27.686 -2.269 2.101 -0.789 H7 J5A 18 J5A H8 H8 H 0 1 N N N N N N 12.897 53.919 23.082 2.463 -0.377 -1.132 H8 J5A 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J5A O C1 DOUB N N 1 J5A C C1 SING N N 2 J5A C1 N SING N N 3 J5A N C2 SING N N 4 J5A C2 C3 SING N N 5 J5A C3 C4 DOUB Y N 6 J5A C3 S SING Y N 7 J5A C4 C5 SING Y N 8 J5A S C6 SING Y N 9 J5A C5 C6 DOUB Y N 10 J5A C5 BR SING N N 11 J5A C H1 SING N N 12 J5A C H2 SING N N 13 J5A C H3 SING N N 14 J5A C2 H4 SING N N 15 J5A C2 H5 SING N N 16 J5A C4 H6 SING N N 17 J5A C6 H7 SING N N 18 J5A N H8 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J5A SMILES ACDLabs 12.01 "CC(=O)NCc1cc(cs1)Br" J5A InChI InChI 1.03 "InChI=1S/C7H8BrNOS/c1-5(10)9-3-7-2-6(8)4-11-7/h2,4H,3H2,1H3,(H,9,10)" J5A InChIKey InChI 1.03 GPLBTWBXJXXSBT-UHFFFAOYSA-N J5A SMILES_CANONICAL CACTVS 3.385 "CC(=O)NCc1scc(Br)c1" J5A SMILES CACTVS 3.385 "CC(=O)NCc1scc(Br)c1" J5A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)NCc1cc(cs1)Br" J5A SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NCc1cc(cs1)Br" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J5A "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(4-bromothiophen-2-yl)methyl]acetamide" J5A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[(4-bromanylthiophen-2-yl)methyl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J5A "Create component" 2018-08-13 RCSB J5A "Initial release" 2019-12-18 RCSB J5A "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id J5A _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #