data_J5U # _chem_comp.id J5U _chem_comp.name "2-[2-[[2-methyl-5-[6-[2-(4-methylpiperazin-1-yl)ethyl]pyridin-3-yl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H37 N9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-25 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 543.729 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J5U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZI8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J5U C4 C1 C 0 1 Y N N -11.676 -31.576 10.116 -3.245 -0.805 -0.193 C4 J5U 1 J5U C14 C2 C 0 1 Y N N -10.247 -36.735 11.469 2.182 -2.302 -0.274 C14 J5U 2 J5U C5 C3 C 0 1 Y N N -10.835 -29.540 9.940 -4.701 0.829 -0.674 C5 J5U 3 J5U C6 C4 C 0 1 Y N N -10.947 -28.113 9.794 -5.819 1.743 -0.351 C6 J5U 4 J5U C11 C5 C 0 1 Y N N -12.140 -33.918 9.783 -1.563 -2.517 0.036 C11 J5U 5 J5U C7 C6 C 0 1 Y N N -12.356 -26.323 9.723 -7.242 3.437 -1.016 C7 J5U 6 J5U C8 C7 C 0 1 Y N N -11.285 -25.467 9.467 -7.850 3.405 0.236 C8 J5U 7 J5U C9 C8 C 0 1 Y N N -10.012 -26.065 9.364 -7.388 2.485 1.174 C9 J5U 8 J5U C10 C9 C 0 1 Y N N -9.670 -30.221 10.101 -4.096 0.826 -1.876 C10 J5U 9 J5U C12 C10 C 0 1 Y N N -11.477 -34.677 10.750 -0.261 -2.052 0.148 C12 J5U 10 J5U C13 C11 C 0 1 Y N N -11.000 -35.956 10.455 0.787 -2.794 -0.389 C13 J5U 11 J5U N1 N1 N 0 1 N N N -12.565 -32.585 10.059 -2.619 -1.775 0.574 N1 J5U 12 J5U N2 N2 N 0 1 Y N N -11.986 -30.320 9.960 -4.227 -0.057 0.203 N2 J5U 13 J5U C3 C12 C 0 1 N N N -14.018 -32.306 10.061 -3.064 -2.023 1.947 C3 J5U 14 J5U N3 N3 N 0 1 Y N N -12.171 -27.624 9.889 -6.240 2.600 -1.272 N3 J5U 15 J5U C1 C13 C 0 1 N N N -16.126 -31.890 11.306 -2.766 -1.357 4.337 C1 J5U 16 J5U C2 C14 C 0 1 N N N -14.639 -32.185 11.438 -2.364 -1.045 2.894 C2 J5U 17 J5U N4 N4 N 0 1 N N N -13.613 -25.907 9.843 -7.677 4.329 -1.985 N4 J5U 18 J5U N5 N5 N 0 1 N N N -8.898 -25.340 9.117 -7.963 2.418 2.434 N5 J5U 19 J5U N6 N6 N 0 1 Y N N -9.857 -27.383 9.517 -6.378 1.682 0.851 N6 J5U 20 J5U S1 S1 S 0 1 Y N N -9.984 -31.904 10.217 -2.825 -0.393 -1.853 S1 J5U 21 J5U C15 C15 C 0 1 Y N N -10.047 -38.114 11.404 3.241 -3.036 -0.815 C15 J5U 22 J5U C16 C16 C 0 1 Y N N -9.292 -38.763 12.364 4.524 -2.531 -0.686 C16 J5U 23 J5U C17 C17 C 0 1 Y N N -8.666 -38.015 13.348 4.714 -1.327 -0.033 C17 J5U 24 J5U C18 C18 C 0 1 N N N -7.863 -38.581 14.497 6.109 -0.773 0.110 C18 J5U 25 J5U C19 C19 C 0 1 N N N -6.992 -39.824 14.306 6.155 0.646 -0.461 C19 J5U 26 J5U N7 N7 N 0 1 N N N -5.945 -39.916 15.343 7.514 1.186 -0.322 N7 J5U 27 J5U C20 C20 C 0 1 N N N -5.187 -41.183 15.336 7.865 1.370 1.092 C20 J5U 28 J5U C21 C21 C 0 1 N N N -5.042 -41.794 16.719 9.312 1.857 1.197 C21 J5U 29 J5U N8 N8 N 0 1 N N N -4.577 -40.865 17.752 9.457 3.116 0.452 N8 J5U 30 J5U C22 C22 C 0 1 N N N -3.121 -40.691 17.720 10.816 3.656 0.591 C22 J5U 31 J5U C23 C23 C 0 1 N N N -5.295 -39.594 17.697 9.106 2.932 -0.963 C23 J5U 32 J5U C24 C24 C 0 1 N N N -6.441 -39.650 16.713 7.659 2.444 -1.067 C24 J5U 33 J5U N9 N9 N 0 1 Y N N -8.819 -36.685 13.405 3.695 -0.656 0.468 N9 J5U 34 J5U C25 C25 C 0 1 Y N N -9.559 -36.070 12.476 2.457 -1.097 0.370 C25 J5U 35 J5U C26 C26 C 0 1 Y N N -11.173 -36.434 9.162 0.523 -4.000 -1.036 C26 J5U 36 J5U C27 C27 C 0 1 Y N N -11.839 -35.690 8.206 -0.776 -4.456 -1.143 C27 J5U 37 J5U C28 C28 C 0 1 Y N N -12.299 -34.406 8.492 -1.818 -3.718 -0.615 C28 J5U 38 J5U C29 C29 C 0 1 N N N -12.960 -33.597 7.440 -3.233 -4.222 -0.735 C29 J5U 39 J5U H1 H1 H 0 1 N N N -11.423 -24.402 9.354 -8.665 4.073 0.472 H1 J5U 40 J5U H2 H2 H 0 1 N N N -8.690 -29.769 10.149 -4.341 1.468 -2.709 H2 J5U 41 J5U H3 H3 H 0 1 N N N -11.331 -34.269 11.739 -0.061 -1.116 0.649 H3 J5U 42 J5U H4 H4 H 0 1 N N N -14.186 -31.360 9.525 -4.143 -1.881 2.011 H4 J5U 43 J5U H5 H5 H 0 1 N N N -14.524 -33.124 9.528 -2.814 -3.045 2.231 H5 J5U 44 J5U H6 H6 H 0 1 N N N -16.573 -31.803 12.307 -2.471 -2.377 4.584 H6 J5U 45 J5U H7 H7 H 0 1 N N N -16.265 -30.946 10.759 -2.268 -0.661 5.012 H7 J5U 46 J5U H8 H8 H 0 1 N N N -16.615 -32.708 10.756 -3.846 -1.256 4.443 H8 J5U 47 J5U H9 H9 H 0 1 N N N -14.501 -33.129 11.986 -1.284 -1.146 2.788 H9 J5U 48 J5U H10 H10 H 0 1 N N N -14.151 -31.367 11.988 -2.660 -0.026 2.647 H10 J5U 49 J5U H11 H11 H 0 1 N N N -14.205 -26.687 10.044 -7.250 4.345 -2.855 H11 J5U 50 J5U H12 H12 H 0 1 N N N -13.674 -25.242 10.587 -8.408 4.936 -1.791 H12 J5U 51 J5U H13 H13 H 0 1 N N N -8.104 -25.947 9.089 -8.692 3.014 2.667 H13 J5U 52 J5U H14 H14 H 0 1 N N N -8.992 -24.874 8.237 -7.637 1.775 3.082 H14 J5U 53 J5U H15 H15 H 0 1 N N N -10.486 -38.680 10.596 3.063 -3.974 -1.320 H15 J5U 54 J5U H16 H16 H 0 1 N N N -9.192 -39.838 12.347 5.366 -3.071 -1.092 H16 J5U 55 J5U H17 H17 H 0 1 N N N -7.193 -37.778 14.837 6.384 -0.750 1.164 H17 J5U 56 J5U H18 H18 H 0 1 N N N -8.582 -38.821 15.294 6.809 -1.407 -0.435 H18 J5U 57 J5U H19 H19 H 0 1 N N N -7.629 -40.719 14.361 5.879 0.622 -1.516 H19 J5U 58 J5U H20 H20 H 0 1 N N N -6.512 -39.776 13.317 5.454 1.279 0.083 H20 J5U 59 J5U H22 H22 H 0 1 N N N -5.711 -41.901 14.688 7.199 2.109 1.539 H22 J5U 60 J5U H23 H23 H 0 1 N N N -4.183 -40.989 14.931 7.762 0.422 1.620 H23 J5U 61 J5U H24 H24 H 0 1 N N N -6.023 -42.185 17.026 9.566 2.023 2.244 H24 J5U 62 J5U H25 H25 H 0 1 N N N -4.322 -42.623 16.654 9.980 1.107 0.775 H25 J5U 63 J5U H27 H27 H 0 1 N N N -2.818 -39.988 18.510 11.535 2.935 0.202 H27 J5U 64 J5U H28 H28 H 0 1 N N N -2.632 -41.662 17.886 10.896 4.588 0.031 H28 J5U 65 J5U H29 H29 H 0 1 N N N -2.821 -40.293 16.740 11.026 3.846 1.644 H29 J5U 66 J5U H30 H30 H 0 1 N N N -4.597 -38.802 17.389 9.209 3.880 -1.490 H30 J5U 67 J5U H31 H31 H 0 1 N N N -5.692 -39.364 18.697 9.771 2.193 -1.409 H31 J5U 68 J5U H32 H32 H 0 1 N N N -6.973 -38.687 16.723 7.405 2.279 -2.114 H32 J5U 69 J5U H33 H33 H 0 1 N N N -7.132 -40.453 17.009 6.991 3.195 -0.645 H33 J5U 70 J5U H34 H34 H 0 1 N N N -9.626 -34.993 12.511 1.648 -0.517 0.788 H34 J5U 71 J5U H35 H35 H 0 1 N N N -10.780 -37.405 8.899 1.334 -4.577 -1.454 H35 J5U 72 J5U H36 H36 H 0 1 N N N -12.005 -36.109 7.225 -0.979 -5.389 -1.648 H36 J5U 73 J5U H37 H37 H 0 1 N N N -14.042 -33.794 7.451 -3.473 -4.840 0.130 H37 J5U 74 J5U H38 H38 H 0 1 N N N -12.780 -32.529 7.632 -3.918 -3.376 -0.779 H38 J5U 75 J5U H39 H39 H 0 1 N N N -12.548 -33.868 6.457 -3.331 -4.816 -1.644 H39 J5U 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J5U C29 C28 SING N N 1 J5U C27 C28 DOUB Y N 2 J5U C27 C26 SING Y N 3 J5U C28 C11 SING Y N 4 J5U N5 C9 SING N N 5 J5U C26 C13 DOUB Y N 6 J5U C9 C8 DOUB Y N 7 J5U C9 N6 SING Y N 8 J5U C8 C7 SING Y N 9 J5U N6 C6 DOUB Y N 10 J5U C7 N4 SING N N 11 J5U C7 N3 DOUB Y N 12 J5U C11 N1 SING N N 13 J5U C11 C12 DOUB Y N 14 J5U C6 N3 SING Y N 15 J5U C6 C5 SING N N 16 J5U C5 N2 SING Y N 17 J5U C5 C10 DOUB Y N 18 J5U N2 C4 DOUB Y N 19 J5U N1 C3 SING N N 20 J5U N1 C4 SING N N 21 J5U C3 C2 SING N N 22 J5U C10 S1 SING Y N 23 J5U C4 S1 SING Y N 24 J5U C13 C12 SING Y N 25 J5U C13 C14 SING N N 26 J5U C1 C2 SING N N 27 J5U C15 C14 DOUB Y N 28 J5U C15 C16 SING Y N 29 J5U C14 C25 SING Y N 30 J5U C16 C17 DOUB Y N 31 J5U C25 N9 DOUB Y N 32 J5U C17 N9 SING Y N 33 J5U C17 C18 SING N N 34 J5U C19 C18 SING N N 35 J5U C19 N7 SING N N 36 J5U C20 N7 SING N N 37 J5U C20 C21 SING N N 38 J5U N7 C24 SING N N 39 J5U C24 C23 SING N N 40 J5U C21 N8 SING N N 41 J5U C23 N8 SING N N 42 J5U C22 N8 SING N N 43 J5U C8 H1 SING N N 44 J5U C10 H2 SING N N 45 J5U C12 H3 SING N N 46 J5U C3 H4 SING N N 47 J5U C3 H5 SING N N 48 J5U C1 H6 SING N N 49 J5U C1 H7 SING N N 50 J5U C1 H8 SING N N 51 J5U C2 H9 SING N N 52 J5U C2 H10 SING N N 53 J5U N4 H11 SING N N 54 J5U N4 H12 SING N N 55 J5U N5 H13 SING N N 56 J5U N5 H14 SING N N 57 J5U C15 H15 SING N N 58 J5U C16 H16 SING N N 59 J5U C18 H17 SING N N 60 J5U C18 H18 SING N N 61 J5U C19 H19 SING N N 62 J5U C19 H20 SING N N 63 J5U C20 H22 SING N N 64 J5U C20 H23 SING N N 65 J5U C21 H24 SING N N 66 J5U C21 H25 SING N N 67 J5U C22 H27 SING N N 68 J5U C22 H28 SING N N 69 J5U C22 H29 SING N N 70 J5U C23 H30 SING N N 71 J5U C23 H31 SING N N 72 J5U C24 H32 SING N N 73 J5U C24 H33 SING N N 74 J5U C25 H34 SING N N 75 J5U C26 H35 SING N N 76 J5U C27 H36 SING N N 77 J5U C29 H37 SING N N 78 J5U C29 H38 SING N N 79 J5U C29 H39 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J5U InChI InChI 1.06 "InChI=1S/C29H37N9S/c1-4-10-38(29-33-24(19-39-29)28-34-26(30)17-27(31)35-28)25-16-21(6-5-20(25)2)22-7-8-23(32-18-22)9-11-37-14-12-36(3)13-15-37/h5-8,16-19H,4,9-15H2,1-3H3,(H4,30,31,34,35)" J5U InChIKey InChI 1.06 YNFSLZUCOOMOSV-UHFFFAOYSA-N J5U SMILES_CANONICAL CACTVS 3.385 "CCCN(c1scc(n1)c2nc(N)cc(N)n2)c3cc(ccc3C)c4ccc(CCN5CCN(C)CC5)nc4" J5U SMILES CACTVS 3.385 "CCCN(c1scc(n1)c2nc(N)cc(N)n2)c3cc(ccc3C)c4ccc(CCN5CCN(C)CC5)nc4" J5U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN(c1cc(ccc1C)c2ccc(nc2)CCN3CCN(CC3)C)c4nc(cs4)c5nc(cc(n5)N)N" J5U SMILES "OpenEye OEToolkits" 2.0.7 "CCCN(c1cc(ccc1C)c2ccc(nc2)CCN3CCN(CC3)C)c4nc(cs4)c5nc(cc(n5)N)N" # _pdbx_chem_comp_identifier.comp_id J5U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[2-[[2-methyl-5-[6-[2-(4-methylpiperazin-1-yl)ethyl]pyridin-3-yl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J5U "Create component" 2022-04-25 PDBE J5U "Modify descriptor" 2022-08-22 RCSB J5U "Initial release" 2023-06-07 RCSB #