data_J5X # _chem_comp.id J5X _chem_comp.name "Gibberellin A9" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-13 _chem_comp.pdbx_modified_date 2022-02-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 316.391 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J5X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EKD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J5X C1 C1 C 0 1 N N N 14.165 10.767 16.766 -1.666 -1.527 -1.772 C1 J5X 1 J5X C2 C2 C 0 1 N N N 12.898 11.134 17.514 -3.114 -1.512 -1.254 C2 J5X 2 J5X C3 C3 C 0 1 N N N 13.074 11.473 18.977 -3.511 -0.123 -0.758 C3 J5X 3 J5X C4 C4 C 0 1 N N R 14.377 11.060 19.608 -2.464 0.419 0.238 C4 J5X 4 J5X C5 C5 C 0 1 N N R 15.594 11.193 18.680 -1.171 0.596 -0.590 C5 J5X 5 J5X C6 C6 C 0 1 N N S 16.906 10.622 19.178 -0.016 1.189 0.239 C6 J5X 6 J5X C7 C7 C 0 1 N N N 17.864 11.537 19.888 0.366 2.545 -0.297 C7 J5X 7 J5X C8 C8 C 0 1 N N R 17.558 9.879 18.014 1.147 0.217 0.085 C8 J5X 8 J5X C9 C9 C 0 1 N N R 16.488 9.815 16.921 0.695 -0.854 -0.922 C9 J5X 9 J5X C10 C10 C 0 1 N N R 15.222 10.172 17.641 -0.789 -0.930 -0.691 C10 J5X 10 J5X C11 C11 C 0 1 N N N 16.383 8.540 16.145 1.511 -2.090 -0.966 C11 J5X 11 J5X C12 C12 C 0 1 N N N 17.749 7.883 15.981 2.376 -2.415 0.231 C12 J5X 12 J5X C13 C13 C 0 1 N N R 18.781 8.118 17.038 2.784 -1.187 1.039 C13 J5X 13 J5X C14 C14 C 0 1 N N N 18.144 8.526 18.371 1.460 -0.472 1.432 C14 J5X 14 J5X C15 C15 C 0 1 N N N 18.757 10.510 17.380 2.480 0.797 -0.366 C15 J5X 15 J5X C16 C16 C 0 1 N N N 19.431 9.388 16.690 3.519 -0.182 0.172 C16 J5X 16 J5X C17 C17 C 0 1 N N N 20.491 9.523 15.930 4.806 -0.159 -0.070 C17 J5X 17 J5X C18 C18 C 0 1 N N N 14.595 11.584 21.004 -2.911 1.697 0.950 C18 J5X 18 J5X C19 C19 C 0 1 N N N 14.139 9.616 19.583 -2.128 -0.718 1.193 C19 J5X 19 J5X O91 O1 O 0 1 N N N 13.531 9.016 20.357 -2.646 -0.910 2.268 O91 J5X 20 J5X O92 O2 O 0 1 N N N 14.698 9.109 18.420 -1.138 -1.462 0.614 O92 J5X 21 J5X O71 O3 O 0 1 N N N 17.893 12.713 19.640 0.302 2.766 -1.483 O71 J5X 22 J5X O72 O4 O 0 1 N N N 18.625 11.048 20.684 0.776 3.508 0.544 O72 J5X 23 J5X H1 H1 H 0 1 N N N 13.909 10.037 15.984 -1.356 -2.552 -1.975 H1 J5X 24 J5X H2 H2 H 0 1 N N N 14.570 11.677 16.300 -1.592 -0.930 -2.681 H2 J5X 25 J5X H3 H3 H 0 1 N N N 12.453 12.008 17.016 -3.784 -1.809 -2.060 H3 J5X 26 J5X H4 H4 H 0 1 N N N 12.206 10.281 17.446 -3.206 -2.224 -0.433 H4 J5X 27 J5X H5 H5 H 0 1 N N N 12.983 12.564 19.081 -3.582 0.555 -1.609 H5 J5X 28 J5X H6 H6 H 0 1 N N N 12.262 10.983 19.534 -4.481 -0.181 -0.264 H6 J5X 29 J5X H7 H7 H 0 1 N N N 15.700 12.207 18.267 -1.326 1.100 -1.544 H7 J5X 30 J5X H8 H8 H 0 1 N N N 16.635 9.846 19.909 -0.307 1.268 1.286 H8 J5X 31 J5X H9 H9 H 0 1 N N N 16.703 10.623 16.207 0.815 -0.394 -1.902 H9 J5X 32 J5X H10 H10 H 0 1 N N N 15.968 8.758 15.150 0.834 -2.929 -1.123 H10 J5X 33 J5X H11 H11 H 0 1 N N N 15.714 7.849 16.678 2.162 -2.026 -1.837 H11 J5X 34 J5X H12 H12 H 0 1 N N N 17.583 6.797 15.924 1.829 -3.096 0.883 H12 J5X 35 J5X H13 H13 H 0 1 N N N 18.170 8.240 15.030 3.277 -2.919 -0.117 H13 J5X 36 J5X H14 H14 H 0 1 N N N 19.485 7.280 17.147 3.363 -1.467 1.920 H14 J5X 37 J5X H15 H15 H 0 1 N N N 17.362 7.816 18.678 1.621 0.257 2.226 H15 J5X 38 J5X H16 H16 H 0 1 N N N 18.897 8.610 19.169 0.685 -1.189 1.703 H16 J5X 39 J5X H17 H17 H 0 1 N N N 19.415 10.952 18.143 2.527 0.842 -1.454 H17 J5X 40 J5X H18 H18 H 0 1 N N N 18.456 11.286 16.661 2.630 1.788 0.063 H18 J5X 41 J5X H19 H19 H 0 1 N N N 20.925 10.500 15.777 5.451 -0.907 0.367 H19 J5X 42 J5X H20 H20 H 0 1 N N N 20.930 8.657 15.457 5.223 0.608 -0.707 H20 J5X 43 J5X H21 H21 H 0 1 N N N 13.677 11.449 21.595 -3.833 1.504 1.499 H21 J5X 44 J5X H22 H22 H 0 1 N N N 15.420 11.032 21.478 -2.134 2.017 1.645 H22 J5X 45 J5X H23 H23 H 0 1 N N N 14.847 12.654 20.959 -3.085 2.482 0.213 H23 J5X 46 J5X H24 H24 H 0 1 N N N 19.193 11.723 21.036 1.010 4.361 0.154 H24 J5X 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J5X C17 C16 DOUB N N 1 J5X C12 C11 SING N N 2 J5X C12 C13 SING N N 3 J5X C11 C9 SING N N 4 J5X C16 C13 SING N N 5 J5X C16 C15 SING N N 6 J5X C1 C2 SING N N 7 J5X C1 C10 SING N N 8 J5X C9 C10 SING N N 9 J5X C9 C8 SING N N 10 J5X C13 C14 SING N N 11 J5X C15 C8 SING N N 12 J5X C2 C3 SING N N 13 J5X C10 O92 SING N N 14 J5X C10 C5 SING N N 15 J5X C8 C14 SING N N 16 J5X C8 C6 SING N N 17 J5X O92 C19 SING N N 18 J5X C5 C6 SING N N 19 J5X C5 C4 SING N N 20 J5X C3 C4 SING N N 21 J5X C6 C7 SING N N 22 J5X C19 C4 SING N N 23 J5X C19 O91 DOUB N N 24 J5X C4 C18 SING N N 25 J5X O71 C7 DOUB N N 26 J5X C7 O72 SING N N 27 J5X C1 H1 SING N N 28 J5X C1 H2 SING N N 29 J5X C2 H3 SING N N 30 J5X C2 H4 SING N N 31 J5X C3 H5 SING N N 32 J5X C3 H6 SING N N 33 J5X C5 H7 SING N N 34 J5X C6 H8 SING N N 35 J5X C9 H9 SING N N 36 J5X C11 H10 SING N N 37 J5X C11 H11 SING N N 38 J5X C12 H12 SING N N 39 J5X C12 H13 SING N N 40 J5X C13 H14 SING N N 41 J5X C14 H15 SING N N 42 J5X C14 H16 SING N N 43 J5X C15 H17 SING N N 44 J5X C15 H18 SING N N 45 J5X C17 H19 SING N N 46 J5X C17 H20 SING N N 47 J5X C18 H21 SING N N 48 J5X C18 H22 SING N N 49 J5X C18 H23 SING N N 50 J5X O72 H24 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J5X InChI InChI 1.03 "InChI=1S/C19H24O4/c1-10-8-18-9-11(10)4-5-12(18)19-7-3-6-17(2,16(22)23-19)14(19)13(18)15(20)21/h11-14H,1,3-9H2,2H3,(H,20,21)/t11-,12-,13-,14-,17-,18+,19-/m1/s1" J5X InChIKey InChI 1.03 MHVYWTXXZIFXDT-YGNOGLJPSA-N J5X SMILES_CANONICAL CACTVS 3.385 "C[C@]12CCC[C@@]3(OC1=O)[C@@H]4CC[C@@H]5C[C@]4(CC5=C)[C@H]([C@H]23)C(O)=O" J5X SMILES CACTVS 3.385 "C[C]12CCC[C]3(OC1=O)[CH]4CC[CH]5C[C]4(CC5=C)[CH]([CH]23)C(O)=O" J5X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]12CCC[C@@]3([C@@H]1[C@@H]([C@]45[C@H]3CC[C@H](C4)C(=C)C5)C(=O)O)OC2=O" J5X SMILES "OpenEye OEToolkits" 2.0.7 "CC12CCCC3(C1C(C45C3CCC(C4)C(=C)C5)C(=O)O)OC2=O" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J5X "Create component" 2021-04-13 PDBJ J5X "Initial release" 2022-02-16 RCSB ##