data_J5Y # _chem_comp.id J5Y _chem_comp.name "Nalpha-{4-[4-(5-chloro-2-methylphenyl)piperazin-1-yl]-2-fluorobenzoyl}-N-pyridin-4-yl-D-tryptophanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H32 Cl F N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-08-08 _chem_comp.pdbx_modified_date 2014-11-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 611.108 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J5Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4UVR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J5Y C C C 0 1 N N N -7.978 63.993 -0.819 7.644 3.190 0.632 C J5Y 1 J5Y F F F 0 1 N N N -5.561 56.766 -6.979 -0.385 0.511 2.836 F J5Y 2 J5Y N N N 0 1 N N N -8.450 61.753 -2.882 6.127 0.827 0.174 N J5Y 3 J5Y O O O 0 1 N N N -3.870 54.170 -4.308 -2.624 0.333 1.742 O J5Y 4 J5Y CL CL CL 0 0 N N N -13.412 62.660 -3.215 10.248 -2.008 -0.902 CL J5Y 5 J5Y C1 C1 C 0 1 Y N N -9.304 63.648 -1.418 8.295 1.886 0.248 C1 J5Y 6 J5Y N1 N1 N 0 1 N N N -6.690 59.768 -3.556 3.471 -0.196 0.111 N1 J5Y 7 J5Y O1 O1 O 0 1 N N N -4.057 50.667 -5.659 -4.006 2.248 -0.600 O1 J5Y 8 J5Y C2 C2 C 0 1 Y N N -10.412 64.363 -1.019 9.667 1.812 0.114 C2 J5Y 9 J5Y N2 N2 N 0 1 N N N -4.915 54.038 -6.204 -2.918 -0.131 -0.410 N2 J5Y 10 J5Y C3 C3 C 0 1 Y N N -11.662 64.064 -1.551 10.266 0.617 -0.239 C3 J5Y 11 J5Y N3 N3 N 0 1 Y N N -7.527 53.101 -9.275 -3.669 -4.324 -1.305 N3 J5Y 12 J5Y C4 C4 C 0 1 Y N N -11.812 63.065 -2.495 9.492 -0.509 -0.459 C4 J5Y 13 J5Y N4 N4 N 0 1 N N N -6.126 51.580 -5.782 -6.132 1.682 -0.312 N4 J5Y 14 J5Y C5 C5 C 0 1 Y N N -10.737 62.326 -2.937 8.118 -0.442 -0.327 C5 J5Y 15 J5Y N5 N5 N 0 1 Y N N -8.376 48.172 -5.071 -7.334 5.632 -0.395 N5 J5Y 16 J5Y C6 C6 C 0 1 Y N N -9.478 62.584 -2.451 7.515 0.756 0.033 C6 J5Y 17 J5Y C7 C7 C 0 1 N N N -8.349 61.300 -4.245 5.655 -0.099 1.213 C7 J5Y 18 J5Y C8 C8 C 0 1 N N N -6.920 60.847 -4.503 4.144 0.065 1.391 C8 J5Y 19 J5Y C9 C9 C 0 1 N N N -7.003 59.940 -2.143 3.943 0.730 -0.928 C9 J5Y 20 J5Y C10 C10 C 0 1 N N N -7.538 61.301 -1.857 5.454 0.565 -1.106 C10 J5Y 21 J5Y C11 C11 C 0 1 Y N N -6.201 58.516 -3.952 2.089 -0.126 0.251 C11 J5Y 22 J5Y C12 C12 C 0 1 Y N N -5.851 57.567 -2.987 1.268 -0.345 -0.852 C12 J5Y 23 J5Y C13 C13 C 0 1 Y N N -5.367 56.314 -3.369 -0.090 -0.278 -0.722 C13 J5Y 24 J5Y C14 C14 C 0 1 Y N N -5.275 55.942 -4.706 -0.663 0.011 0.520 C14 J5Y 25 J5Y C15 C15 C 0 1 N N N -4.695 54.621 -5.064 -2.128 0.082 0.660 C15 J5Y 26 J5Y C16 C16 C 0 1 N N R -4.162 52.865 -6.589 -4.375 -0.059 -0.271 C16 J5Y 27 J5Y C17 C17 C 0 1 N N N -4.027 52.821 -8.126 -5.033 -0.905 -1.363 C17 J5Y 28 J5Y C18 C18 C 0 1 Y N N -5.413 52.646 -8.659 -4.683 -2.356 -1.155 C18 J5Y 29 J5Y C19 C19 C 0 1 Y N N -6.350 53.643 -8.842 -3.678 -3.026 -1.738 C19 J5Y 30 J5Y C20 C20 C 0 1 Y N N -7.461 51.775 -9.394 -4.695 -4.526 -0.409 C20 J5Y 31 J5Y C21 C21 C 0 1 Y N N -8.365 50.789 -9.783 -5.130 -5.630 0.316 C21 J5Y 32 J5Y C22 C22 C 0 1 Y N N -7.954 49.454 -9.799 -6.218 -5.513 1.154 C22 J5Y 33 J5Y C23 C23 C 0 1 Y N N -6.664 49.110 -9.417 -6.886 -4.303 1.282 C23 J5Y 34 J5Y C24 C24 C 0 1 Y N N -5.731 50.073 -9.003 -6.475 -3.205 0.579 C24 J5Y 35 J5Y C25 C25 C 0 1 Y N N -6.103 51.391 -9.005 -5.376 -3.301 -0.275 C25 J5Y 36 J5Y C26 C26 C 0 1 N N N -4.784 51.602 -5.960 -4.823 1.373 -0.406 C26 J5Y 37 J5Y C27 C27 C 0 1 Y N N -6.810 50.466 -5.458 -6.538 3.016 -0.340 C27 J5Y 38 J5Y C28 C28 C 0 1 Y N N -8.130 50.410 -5.847 -5.867 3.952 -1.126 C28 J5Y 39 J5Y C29 C29 C 0 1 Y N N -8.881 49.272 -5.635 -6.300 5.261 -1.126 C29 J5Y 40 J5Y C30 C30 C 0 1 Y N N -7.099 48.186 -4.693 -7.994 4.777 0.363 C30 J5Y 41 J5Y C31 C31 C 0 1 Y N N -6.278 49.314 -4.873 -7.624 3.449 0.418 C31 J5Y 42 J5Y C32 C32 C 0 1 Y N N -5.648 56.971 -5.706 0.161 0.231 1.632 C32 J5Y 43 J5Y C33 C33 C 0 1 Y N N -6.095 58.201 -5.306 1.532 0.157 1.494 C33 J5Y 44 J5Y H H H 0 1 N N N -7.814 63.386 0.084 7.403 3.755 -0.268 H J5Y 45 J5Y HA HA H 0 1 N N N -7.181 63.787 -1.549 6.729 2.989 1.190 HA J5Y 46 J5Y HB HB H 0 1 N N N -7.963 65.060 -0.551 8.328 3.769 1.253 HB J5Y 47 J5Y H2 H2 H 0 1 N N N -10.310 65.156 -0.293 10.274 2.689 0.285 H2 J5Y 48 J5Y HN2 HN2 H 0 1 N N N -5.612 54.404 -6.821 -2.523 -0.331 -1.273 HN2 J5Y 49 J5Y H3 H3 H 0 1 N N N -12.527 64.620 -1.222 11.339 0.562 -0.343 H3 J5Y 50 J5Y HN3 HN3 H 0 1 N N N -8.345 53.638 -9.479 -3.037 -5.003 -1.590 HN3 J5Y 51 J5Y HN4 HN4 H 0 1 N N N -6.635 52.433 -5.897 -6.791 0.976 -0.225 HN4 J5Y 52 J5Y H5 H5 H 0 1 N N N -10.884 61.543 -3.666 7.514 -1.320 -0.500 H5 J5Y 53 J5Y H7 H7 H 0 1 N N N -9.039 60.459 -4.408 5.877 -1.124 0.914 H7 J5Y 54 J5Y H7A H7A H 0 1 N N N -8.606 62.123 -4.929 6.159 0.123 2.154 H7A J5Y 55 J5Y H8 H8 H 0 1 N N N -6.215 61.673 -4.327 3.925 1.082 1.716 H8 J5Y 56 J5Y H8A H8A H 0 1 N N N -6.810 60.485 -5.536 3.787 -0.641 2.141 H8A J5Y 57 J5Y H9 H9 H 0 1 N N N -7.756 59.193 -1.851 3.439 0.508 -1.868 H9 J5Y 58 J5Y H9A H9A H 0 1 N N N -6.087 59.786 -1.554 3.721 1.755 -0.629 H9A J5Y 59 J5Y H10 H10 H 0 1 N N N -6.697 62.007 -1.794 5.811 1.272 -1.855 H10 J5Y 60 J5Y H10A H10A H 0 0 N N N -8.070 61.278 -0.894 5.673 -0.452 -1.431 H10A J5Y 61 J5Y H12 H12 H 0 1 N N N -5.956 57.805 -1.939 1.706 -0.567 -1.813 H12 J5Y 62 J5Y H13 H13 H 0 1 N N N -5.056 55.616 -2.606 -0.723 -0.448 -1.581 H13 J5Y 63 J5Y H16 H16 H 0 1 N N N -3.145 52.961 -6.180 -4.665 -0.440 0.708 H16 J5Y 64 J5Y H17 H17 H 0 1 N N N -3.591 53.760 -8.498 -6.115 -0.782 -1.315 H17 J5Y 65 J5Y H17A H17A H 0 0 N N N -3.392 51.976 -8.429 -4.674 -0.581 -2.340 H17A J5Y 66 J5Y H19 H19 H 0 1 N N N -6.178 54.695 -8.669 -2.979 -2.604 -2.445 H19 J5Y 67 J5Y H21 H21 H 0 1 N N N -9.372 51.054 -10.069 -4.617 -6.576 0.223 H21 J5Y 68 J5Y H22 H22 H 0 1 N N N -8.644 48.684 -10.111 -6.554 -6.371 1.717 H22 J5Y 69 J5Y H23 H23 H 0 1 N N N -6.370 48.071 -9.439 -7.737 -4.228 1.942 H23 J5Y 70 J5Y H24 H24 H 0 1 N N N -4.740 49.781 -8.689 -7.000 -2.267 0.683 H24 J5Y 71 J5Y H28 H28 H 0 1 N N N -8.583 51.267 -6.324 -5.020 3.655 -1.727 H28 J5Y 72 J5Y H29 H29 H 0 1 N N N -9.918 49.271 -5.937 -5.786 5.993 -1.733 H29 J5Y 73 J5Y H30 H30 H 0 1 N N N -6.680 47.303 -4.233 -8.835 5.121 0.947 H30 J5Y 74 J5Y H31 H31 H 0 1 N N N -5.244 49.290 -4.561 -8.170 2.754 1.040 H31 J5Y 75 J5Y H33 H33 H 0 1 N N N -6.369 58.936 -6.048 2.171 0.322 2.349 H33 J5Y 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J5Y C C1 SING N N 1 J5Y F C32 SING N N 2 J5Y N C6 SING N N 3 J5Y N C7 SING N N 4 J5Y N C10 SING N N 5 J5Y O C15 DOUB N N 6 J5Y CL C4 SING N N 7 J5Y C1 C2 DOUB Y N 8 J5Y C1 C6 SING Y N 9 J5Y N1 C8 SING N N 10 J5Y N1 C9 SING N N 11 J5Y N1 C11 SING N N 12 J5Y O1 C26 DOUB N N 13 J5Y C2 C3 SING Y N 14 J5Y N2 C15 SING N N 15 J5Y N2 C16 SING N N 16 J5Y C3 C4 DOUB Y N 17 J5Y N3 C19 SING Y N 18 J5Y N3 C20 SING Y N 19 J5Y C4 C5 SING Y N 20 J5Y N4 C26 SING N N 21 J5Y N4 C27 SING N N 22 J5Y C5 C6 DOUB Y N 23 J5Y N5 C29 DOUB Y N 24 J5Y N5 C30 SING Y N 25 J5Y C7 C8 SING N N 26 J5Y C9 C10 SING N N 27 J5Y C11 C12 DOUB Y N 28 J5Y C11 C33 SING Y N 29 J5Y C12 C13 SING Y N 30 J5Y C13 C14 DOUB Y N 31 J5Y C14 C15 SING N N 32 J5Y C14 C32 SING Y N 33 J5Y C16 C17 SING N N 34 J5Y C16 C26 SING N N 35 J5Y C17 C18 SING N N 36 J5Y C18 C19 DOUB Y N 37 J5Y C18 C25 SING Y N 38 J5Y C20 C21 DOUB Y N 39 J5Y C20 C25 SING Y N 40 J5Y C21 C22 SING Y N 41 J5Y C22 C23 DOUB Y N 42 J5Y C23 C24 SING Y N 43 J5Y C24 C25 DOUB Y N 44 J5Y C27 C28 DOUB Y N 45 J5Y C27 C31 SING Y N 46 J5Y C28 C29 SING Y N 47 J5Y C30 C31 DOUB Y N 48 J5Y C32 C33 DOUB Y N 49 J5Y C H SING N N 50 J5Y C HA SING N N 51 J5Y C HB SING N N 52 J5Y C2 H2 SING N N 53 J5Y N2 HN2 SING N N 54 J5Y C3 H3 SING N N 55 J5Y N3 HN3 SING N N 56 J5Y N4 HN4 SING N N 57 J5Y C5 H5 SING N N 58 J5Y C7 H7 SING N N 59 J5Y C7 H7A SING N N 60 J5Y C8 H8 SING N N 61 J5Y C8 H8A SING N N 62 J5Y C9 H9 SING N N 63 J5Y C9 H9A SING N N 64 J5Y C10 H10 SING N N 65 J5Y C10 H10A SING N N 66 J5Y C12 H12 SING N N 67 J5Y C13 H13 SING N N 68 J5Y C16 H16 SING N N 69 J5Y C17 H17 SING N N 70 J5Y C17 H17A SING N N 71 J5Y C19 H19 SING N N 72 J5Y C21 H21 SING N N 73 J5Y C22 H22 SING N N 74 J5Y C23 H23 SING N N 75 J5Y C24 H24 SING N N 76 J5Y C28 H28 SING N N 77 J5Y C29 H29 SING N N 78 J5Y C30 H30 SING N N 79 J5Y C31 H31 SING N N 80 J5Y C33 H33 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J5Y SMILES ACDLabs 12.01 "O=C(Nc1ccncc1)C(NC(=O)c4ccc(N3CCN(c2c(ccc(Cl)c2)C)CC3)cc4F)Cc6c5ccccc5nc6" J5Y InChI InChI 1.03 "InChI=1S/C34H32ClFN6O2/c1-22-6-7-24(35)19-32(22)42-16-14-41(15-17-42)26-8-9-28(29(36)20-26)33(43)40-31(34(44)39-25-10-12-37-13-11-25)18-23-21-38-30-5-3-2-4-27(23)30/h2-13,19-21,31,38H,14-18H2,1H3,(H,40,43)(H,37,39,44)/t31-/m1/s1" J5Y InChIKey InChI 1.03 JYSKTRNZALHBHU-WJOKGBTCSA-N J5Y SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(Cl)cc1N2CCN(CC2)c3ccc(c(F)c3)C(=O)N[C@H](Cc4c[nH]c5ccccc45)C(=O)Nc6ccncc6" J5Y SMILES CACTVS 3.385 "Cc1ccc(Cl)cc1N2CCN(CC2)c3ccc(c(F)c3)C(=O)N[CH](Cc4c[nH]c5ccccc45)C(=O)Nc6ccncc6" J5Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1ccc(cc1N2CCN(CC2)c3ccc(c(c3)F)C(=O)N[C@H](Cc4c[nH]c5c4cccc5)C(=O)Nc6ccncc6)Cl" J5Y SMILES "OpenEye OEToolkits" 1.7.6 "Cc1ccc(cc1N2CCN(CC2)c3ccc(c(c3)F)C(=O)NC(Cc4c[nH]c5c4cccc5)C(=O)Nc6ccncc6)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J5Y "SYSTEMATIC NAME" ACDLabs 12.01 "Nalpha-{4-[4-(5-chloro-2-methylphenyl)piperazin-1-yl]-2-fluorobenzoyl}-N-pyridin-4-yl-D-tryptophanamide" J5Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[4-(5-chloranyl-2-methyl-phenyl)piperazin-1-yl]-2-fluoranyl-N-[(2R)-3-(1H-indol-3-yl)-1-oxidanylidene-1-(pyridin-4-ylamino)propan-2-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J5Y "Create component" 2014-08-08 EBI J5Y "Initial release" 2014-11-26 RCSB #