data_J6O # _chem_comp.id J6O _chem_comp.name "2-[3,4-bis(oxidanyl)phenyl]-3-[(2S,3R,4S,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5,7-bis(oxidanyl)chromen-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Hyperoside _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-16 _chem_comp.pdbx_modified_date 2022-05-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 464.376 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J6O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ELI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J6O C4 C1 C 0 1 Y N N 16.817 6.718 -32.076 -2.007 -3.191 -1.190 C4 J6O 1 J6O C5 C2 C 0 1 Y N N 16.061 6.163 -33.090 -0.957 -2.297 -1.272 C5 J6O 2 J6O C6 C3 C 0 1 Y N N 16.670 5.647 -34.244 -0.113 -2.112 -0.173 C6 J6O 3 J6O C7 C4 C 0 1 N N N 15.879 5.062 -35.336 1.009 -1.159 -0.255 C7 J6O 4 J6O C8 C5 C 0 1 N N N 14.613 4.484 -35.218 0.773 0.091 -0.743 C8 J6O 5 J6O C10 C6 C 0 1 Y N N 14.630 4.107 -37.649 3.168 0.571 -0.373 C10 J6O 6 J6O C13 C7 C 0 1 Y N N 16.000 4.449 -40.055 5.638 -0.335 0.497 C13 J6O 7 J6O C15 C8 C 0 1 Y N N 15.876 4.728 -37.707 3.299 -0.737 0.124 C15 J6O 8 J6O C17 C9 C 0 1 N N R 12.372 3.814 -32.435 -2.397 1.915 -1.140 C17 J6O 9 J6O C20 C10 C 0 1 N N R 11.154 6.332 -33.203 -2.160 1.887 1.736 C20 J6O 10 J6O C21 C11 C 0 1 N N N 11.104 7.827 -32.993 -2.481 1.230 3.079 C21 J6O 11 J6O C1 C12 C 0 1 Y N N 18.060 5.718 -34.339 -0.335 -2.833 1.003 C1 J6O 12 J6O C11 C13 C 0 1 Y N N 14.074 3.647 -38.867 4.279 1.423 -0.421 C11 J6O 13 J6O C12 C14 C 0 1 Y N N 14.748 3.815 -40.053 5.508 0.963 0.015 C12 J6O 14 J6O C14 C15 C 0 1 Y N N 16.580 4.912 -38.882 4.540 -1.180 0.557 C14 J6O 15 J6O C16 C16 C 0 1 N N S 12.727 4.609 -33.682 -1.140 1.461 -0.393 C16 J6O 16 J6O C18 C17 C 0 1 N N S 11.800 4.750 -31.391 -3.134 2.960 -0.297 C18 J6O 17 J6O C19 C18 C 0 1 N N R 10.659 5.550 -31.991 -3.458 2.358 1.074 C19 J6O 18 J6O C2 C19 C 0 1 Y N N 18.821 6.274 -33.321 -1.385 -3.724 1.077 C2 J6O 19 J6O C3 C20 C 0 1 Y N N 18.206 6.774 -32.192 -2.226 -3.903 -0.012 C3 J6O 20 J6O C9 C21 C 0 1 N N N 13.981 3.968 -36.353 1.842 1.021 -0.828 C9 J6O 21 J6O O1 O1 O 0 1 N N N 12.860 3.405 -36.264 1.669 2.149 -1.261 O1 J6O 22 J6O O10 O2 O 0 1 N N N 11.441 2.789 -32.771 -2.026 2.489 -2.395 O10 J6O 23 J6O O11 O3 O 0 1 N N N 16.235 7.221 -30.946 -2.830 -3.373 -2.258 O11 J6O 24 J6O O12 O4 O 0 1 N N N 18.926 7.325 -31.178 -3.259 -4.781 0.067 O12 J6O 25 J6O O2 O5 O 0 1 N N N 16.466 5.196 -36.569 2.225 -1.553 0.161 O2 J6O 26 J6O O3 O6 O 0 1 N N N 16.653 4.609 -41.229 6.849 -0.776 0.922 O3 J6O 27 J6O O4 O7 O 0 1 N N N 12.867 3.039 -38.871 4.151 2.689 -0.892 O4 J6O 28 J6O O5 O8 O 0 1 N N N 14.096 4.360 -33.940 -0.477 0.445 -1.148 O5 J6O 29 J6O O6 O9 O 0 1 N N N 12.537 5.994 -33.463 -1.509 0.940 0.886 O6 J6O 30 J6O O7 O10 O 0 1 N N N 9.781 8.264 -32.690 -1.264 0.896 3.750 O7 J6O 31 J6O O8 O11 O 0 1 N N N 10.123 6.454 -31.028 -4.341 1.246 0.910 O8 J6O 32 J6O O9 O12 O 0 1 N N N 12.825 5.634 -30.937 -4.346 3.335 -0.953 O9 J6O 33 J6O H1 H1 H 0 1 N N N 14.986 6.126 -32.993 -0.789 -1.742 -2.183 H1 J6O 34 J6O H2 H2 H 0 1 N N N 13.292 3.364 -32.035 -3.049 1.058 -1.309 H2 J6O 35 J6O H3 H3 H 0 1 N N N 10.534 6.070 -34.073 -1.503 2.742 1.897 H3 J6O 36 J6O H4 H4 H 0 1 N N N 11.769 8.094 -32.159 -3.056 1.922 3.694 H4 J6O 37 J6O H5 H5 H 0 1 N N N 11.446 8.329 -33.910 -3.064 0.324 2.911 H5 J6O 38 J6O H6 H6 H 0 1 N N N 18.552 5.334 -35.220 0.315 -2.693 1.854 H6 J6O 39 J6O H7 H7 H 0 1 N N N 14.317 3.461 -40.978 6.371 1.611 -0.026 H7 J6O 40 J6O H8 H8 H 0 1 N N N 17.545 5.398 -38.887 4.653 -2.186 0.933 H8 J6O 41 J6O H9 H9 H 0 1 N N N 12.106 4.261 -34.520 -0.470 2.311 -0.259 H9 J6O 42 J6O H10 H10 H 0 1 N N N 11.414 4.154 -30.551 -2.501 3.838 -0.170 H10 J6O 43 J6O H11 H11 H 0 1 N N N 9.877 4.851 -32.322 -3.933 3.112 1.700 H11 J6O 44 J6O H12 H12 H 0 1 N N N 19.896 6.315 -33.413 -1.556 -4.281 1.987 H12 J6O 45 J6O H13 H13 H 0 1 N N N 11.220 2.293 -31.991 -1.555 1.881 -2.982 H13 J6O 46 J6O H14 H14 H 0 1 N N N 16.908 7.558 -30.366 -2.541 -4.071 -2.862 H14 J6O 47 J6O H15 H15 H 0 1 N N N 18.337 7.612 -30.490 -4.083 -4.392 0.389 H15 J6O 48 J6O H16 H16 H 0 1 N N N 17.480 5.050 -41.074 7.017 -0.619 1.862 H16 J6O 49 J6O H17 H17 H 0 1 N N N 12.531 2.996 -37.984 3.931 3.341 -0.213 H17 J6O 50 J6O H18 H18 H 0 1 N N N 9.779 9.206 -32.563 -1.392 0.474 4.610 H18 J6O 51 J6O H19 H19 H 0 1 N N N 9.815 5.967 -30.273 -5.185 1.472 0.496 H19 J6O 52 J6O H20 H20 H 0 1 N N N 12.469 6.223 -30.282 -4.216 3.718 -1.831 H20 J6O 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J6O O3 C13 SING N N 1 J6O C13 C12 DOUB Y N 2 J6O C13 C14 SING Y N 3 J6O C12 C11 SING Y N 4 J6O C14 C15 DOUB Y N 5 J6O O4 C11 SING N N 6 J6O C11 C10 DOUB Y N 7 J6O C15 C10 SING Y N 8 J6O C15 O2 SING N N 9 J6O C10 C9 SING N N 10 J6O O2 C7 SING N N 11 J6O C9 O1 DOUB N N 12 J6O C9 C8 SING N N 13 J6O C7 C8 DOUB N N 14 J6O C7 C6 SING N N 15 J6O C8 O5 SING N N 16 J6O C1 C6 DOUB Y N 17 J6O C1 C2 SING Y N 18 J6O C6 C5 SING Y N 19 J6O O5 C16 SING N N 20 J6O C16 O6 SING N N 21 J6O C16 C17 SING N N 22 J6O O6 C20 SING N N 23 J6O C2 C3 DOUB Y N 24 J6O C20 C21 SING N N 25 J6O C20 C19 SING N N 26 J6O C5 C4 DOUB Y N 27 J6O C21 O7 SING N N 28 J6O O10 C17 SING N N 29 J6O C17 C18 SING N N 30 J6O C3 C4 SING Y N 31 J6O C3 O12 SING N N 32 J6O C4 O11 SING N N 33 J6O C19 C18 SING N N 34 J6O C19 O8 SING N N 35 J6O C18 O9 SING N N 36 J6O C5 H1 SING N N 37 J6O C17 H2 SING N N 38 J6O C20 H3 SING N N 39 J6O C21 H4 SING N N 40 J6O C21 H5 SING N N 41 J6O C1 H6 SING N N 42 J6O C12 H7 SING N N 43 J6O C14 H8 SING N N 44 J6O C16 H9 SING N N 45 J6O C18 H10 SING N N 46 J6O C19 H11 SING N N 47 J6O C2 H12 SING N N 48 J6O O10 H13 SING N N 49 J6O O11 H14 SING N N 50 J6O O12 H15 SING N N 51 J6O O3 H16 SING N N 52 J6O O4 H17 SING N N 53 J6O O7 H18 SING N N 54 J6O O8 H19 SING N N 55 J6O O9 H20 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J6O InChI InChI 1.03 "InChI=1S/C21H20O12/c22-6-13-15(27)17(29)18(30)21(32-13)33-20-16(28)14-11(26)4-8(23)5-12(14)31-19(20)7-1-2-9(24)10(25)3-7/h1-5,13,15,17-18,21-27,29-30H,6H2/t13-,15+,17+,18-,21+/m1/s1" J6O InChIKey InChI 1.03 OVSQVDMCBVZWGM-DTGCRPNFSA-N J6O SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](OC2=C(Oc3cc(O)cc(O)c3C2=O)c4ccc(O)c(O)c4)[C@H](O)[C@@H](O)[C@H]1O" J6O SMILES CACTVS 3.385 "OC[CH]1O[CH](OC2=C(Oc3cc(O)cc(O)c3C2=O)c4ccc(O)c(O)c4)[CH](O)[CH](O)[CH]1O" J6O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2=C(C(=O)c3c(cc(cc3O2)O)O)O[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)O)O" J6O SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1C2=C(C(=O)c3c(cc(cc3O2)O)O)OC4C(C(C(C(O4)CO)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id J6O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[3,4-bis(oxidanyl)phenyl]-3-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5,7-bis(oxidanyl)chromen-4-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id J6O _pdbx_chem_comp_synonyms.name Hyperoside _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J6O "Create component" 2021-04-16 PDBJ J6O "Initial release" 2022-05-18 RCSB ##