data_J76 # _chem_comp.id J76 _chem_comp.name ;(5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(4-pentylphenyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)te trahydro-2H-pyran-2-yl]oxy}octanamide ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H56 N2 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "aGSA[8,P5p]" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-19 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 640.805 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J76 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C6J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J76 C25 C1 C 0 1 N N N 12.833 -10.583 39.884 -6.448 -9.287 1.326 C25 J76 1 J76 C24 C2 C 0 1 N N N 13.949 -9.706 40.412 -6.142 -8.229 0.264 C24 J76 2 J76 C23 C3 C 0 1 N N N 13.597 -9.548 41.872 -5.519 -7.001 0.932 C23 J76 3 J76 C22 C4 C 0 1 N N N 14.684 -8.648 42.440 -5.213 -5.943 -0.130 C22 J76 4 J76 C21 C5 C 0 1 N N N 14.241 -8.256 43.836 -4.590 -4.715 0.537 C21 J76 5 J76 C20 C6 C 0 1 N N N 15.299 -7.244 44.258 -4.285 -3.657 -0.524 C20 J76 6 J76 C19 C7 C 0 1 N N N 14.969 -6.700 45.632 -3.661 -2.430 0.143 C19 J76 7 J76 C30 C8 C 0 1 N N N 15.157 -5.147 45.539 -3.360 -1.388 -0.902 C30 J76 8 J76 O2 O1 O 0 1 N N N 14.159 -4.455 45.342 -3.619 -1.605 -2.067 O2 J76 9 J76 N N1 N 0 1 N N N 16.413 -4.616 45.584 -2.803 -0.214 -0.544 N J76 10 J76 C1 C9 C 0 1 N N S 16.641 -3.131 45.487 -2.511 0.800 -1.560 C1 J76 11 J76 C C10 C 0 1 N N N 16.461 -2.570 46.908 -3.763 1.640 -1.818 C J76 12 J76 OC1 O2 O 0 1 N N N 17.759 -2.488 47.554 -4.104 2.363 -0.633 OC1 J76 13 J76 CG1 C11 C 0 1 N N S 17.764 -1.961 48.922 -5.266 3.184 -0.766 CG1 J76 14 J76 OG O3 O 0 1 N N N 16.632 -2.374 49.734 -6.426 2.355 -0.867 OG J76 15 J76 CG C12 C 0 1 N N R 16.570 -3.771 50.164 -6.623 1.489 0.252 CG J76 16 J76 CG5 C13 C 0 1 N N N 15.426 -3.782 51.166 -7.871 0.635 0.022 CG5 J76 17 J76 OG6 O4 O 0 1 N N N 14.254 -3.784 50.333 -7.656 -0.232 -1.094 OG6 J76 18 J76 CG4 C14 C 0 1 N N R 17.886 -4.256 50.805 -6.805 2.328 1.519 CG4 J76 19 J76 OG5 O5 O 0 1 N N N 18.032 -3.733 52.139 -7.974 3.140 1.390 OG5 J76 20 J76 CG3 C15 C 0 1 N N S 19.091 -3.841 49.948 -5.578 3.225 1.709 CG3 J76 21 J76 OG4 O6 O 0 1 N N N 20.303 -4.149 50.657 -5.772 4.065 2.849 OG4 J76 22 J76 CG2 C16 C 0 1 N N R 19.064 -2.347 49.651 -5.393 4.091 0.460 CG2 J76 23 J76 OG3 O7 O 0 1 N N N 20.209 -1.998 48.851 -4.209 4.880 0.596 OG3 J76 24 J76 C2 C17 C 0 1 N N S 18.009 -2.770 44.824 -1.381 1.706 -1.067 C2 J76 25 J76 O1 O8 O 0 1 N N N 18.014 -1.379 44.477 -1.182 2.770 -2.000 O1 J76 26 J76 C3 C18 C 0 1 N N R 18.316 -3.596 43.559 -0.093 0.891 -0.940 C3 J76 27 J76 O32 O9 O 0 1 N N N 19.537 -3.089 42.989 -0.292 -0.173 -0.006 O32 J76 28 J76 C4 C19 C 0 1 N N N 17.155 -3.544 42.569 1.037 1.797 -0.446 C4 J76 29 J76 C5 C20 C 0 1 N N N 17.614 -3.916 41.160 2.352 1.014 -0.438 C5 J76 30 J76 C6 C21 C 0 1 N N N 18.210 -5.298 41.250 3.482 1.920 0.056 C6 J76 31 J76 C7 C22 C 0 1 N N N 18.409 -5.861 39.830 4.777 1.150 0.064 C7 J76 32 J76 O O10 O 0 1 N N N 17.644 -6.725 39.403 4.794 -0.010 -0.290 O J76 33 J76 N1 N2 N 0 1 N N N 19.457 -5.319 39.161 5.915 1.749 0.465 N1 J76 34 J76 C18 C23 C 0 1 Y N N 19.927 -5.763 37.972 7.098 1.008 0.566 C18 J76 35 J76 C17 C24 C 0 1 Y N N 20.833 -4.913 37.323 7.359 -0.013 -0.339 C17 J76 36 J76 C16 C25 C 0 1 Y N N 21.434 -5.277 36.122 8.528 -0.742 -0.237 C16 J76 37 J76 C13 C26 C 0 1 Y N N 19.686 -7.037 37.400 8.016 1.296 1.567 C13 J76 38 J76 C14 C27 C 0 1 Y N N 20.290 -7.402 36.192 9.183 0.563 1.664 C14 J76 39 J76 C15 C28 C 0 1 Y N N 21.150 -6.515 35.537 9.437 -0.456 0.765 C15 J76 40 J76 C8 C29 C 0 1 N N N 21.789 -6.862 34.382 10.711 -1.254 0.873 C8 J76 41 J76 C9 C30 C 0 1 N N N 20.855 -7.010 33.226 11.805 -0.583 0.040 C9 J76 42 J76 C10 C31 C 0 1 N N N 20.685 -5.699 32.478 13.099 -1.393 0.150 C10 J76 43 J76 C11 C32 C 0 1 N N N 21.877 -5.663 31.527 14.193 -0.723 -0.683 C11 J76 44 J76 C12 C33 C 0 1 N N N 21.917 -4.285 30.857 15.486 -1.532 -0.573 C12 J76 45 J76 H1 H1 H 0 1 N N N 12.988 -10.768 38.811 -7.145 -8.877 2.057 H1 J76 46 J76 H2 H2 H 0 1 N N N 12.833 -11.541 40.425 -6.892 -10.161 0.850 H2 J76 47 J76 H3 H3 H 0 1 N N N 11.868 -10.077 40.033 -5.524 -9.576 1.827 H3 J76 48 J76 H4 H4 H 0 1 N N N 14.927 -10.196 40.292 -5.445 -8.638 -0.467 H4 J76 49 J76 H5 H5 H 0 1 N N N 13.962 -8.732 39.901 -7.066 -7.939 -0.237 H5 J76 50 J76 H6 H6 H 0 1 N N N 12.608 -9.079 41.983 -6.216 -6.592 1.663 H6 J76 51 J76 H7 H7 H 0 1 N N N 13.599 -10.524 42.379 -4.595 -7.290 1.433 H7 J76 52 J76 H8 H8 H 0 1 N N N 15.640 -9.190 42.484 -4.516 -6.352 -0.861 H8 J76 53 J76 H9 H9 H 0 1 N N N 14.799 -7.751 41.813 -6.137 -5.654 -0.632 H9 J76 54 J76 H10 H10 H 0 1 N N N 13.241 -7.799 43.820 -5.287 -4.306 1.268 H10 J76 55 J76 H11 H11 H 0 1 N N N 14.236 -9.127 44.508 -3.666 -5.005 1.039 H11 J76 56 J76 H12 H12 H 0 1 N N N 16.283 -7.735 44.286 -3.587 -4.067 -1.255 H12 J76 57 J76 H13 H13 H 0 1 N N N 15.322 -6.417 43.534 -5.208 -3.368 -1.026 H13 J76 58 J76 H14 H14 H 0 1 N N N 13.930 -6.944 45.900 -4.358 -2.020 0.874 H14 J76 59 J76 H15 H15 H 0 1 N N N 15.651 -7.123 46.384 -2.737 -2.719 0.645 H15 J76 60 J76 H16 H16 H 0 1 N N N 17.199 -5.226 45.684 -2.596 -0.040 0.388 H16 J76 61 J76 H17 H17 H 0 1 N N N 15.847 -2.704 44.856 -2.206 0.309 -2.485 H17 J76 62 J76 H18 H18 H 0 1 N N N 16.012 -1.567 46.854 -3.569 2.342 -2.628 H18 J76 63 J76 H19 H19 H 0 1 N N N 15.803 -3.235 47.486 -4.590 0.985 -2.094 H19 J76 64 J76 H20 H20 H 0 1 N N N 17.750 -0.863 48.857 -5.177 3.796 -1.664 H20 J76 65 J76 H21 H21 H 0 1 N N N 16.320 -4.422 49.313 -5.755 0.840 0.367 H21 J76 66 J76 H22 H22 H 0 1 N N N 15.463 -4.683 51.796 -8.072 0.038 0.912 H22 J76 67 J76 H23 H23 H 0 1 N N N 15.453 -2.887 51.805 -8.723 1.283 -0.181 H23 J76 68 J76 H24 H24 H 0 1 N N N 13.477 -3.791 50.879 -8.408 -0.805 -1.298 H24 J76 69 J76 H25 H25 H 0 1 N N N 17.859 -5.355 50.846 -6.913 1.669 2.381 H25 J76 70 J76 H26 H26 H 0 1 N N N 17.285 -3.992 52.665 -8.151 3.700 2.159 H26 J76 71 J76 H27 H27 H 0 1 N N N 19.057 -4.395 48.998 -4.694 2.605 1.859 H27 J76 72 J76 H28 H28 H 0 1 N N N 20.331 -5.079 50.848 -5.031 4.660 3.029 H28 J76 73 J76 H29 H29 H 0 1 N N N 19.100 -1.801 50.605 -6.256 4.746 0.340 H29 J76 74 J76 H30 H30 H 0 1 N N N 21.004 -2.241 49.312 -4.028 5.450 -0.163 H30 J76 75 J76 H31 H31 H 0 1 N N N 18.802 -2.967 45.560 -1.646 2.121 -0.094 H31 J76 76 J76 H32 H32 H 0 1 N N N 17.826 -0.859 45.249 -1.017 2.473 -2.906 H32 J76 77 J76 H33 H33 H 0 1 N N N 18.462 -4.643 43.863 0.173 0.476 -1.912 H33 J76 78 J76 H34 H34 H 0 1 N N N 20.233 -3.138 43.634 -0.531 0.123 0.882 H34 J76 79 J76 H35 H35 H 0 1 N N N 16.741 -2.525 42.554 1.130 2.656 -1.111 H35 J76 80 J76 H36 H36 H 0 1 N N N 16.377 -4.251 42.891 0.813 2.141 0.563 H36 J76 81 J76 H37 H37 H 0 1 N N N 18.370 -3.199 40.806 2.259 0.155 0.227 H37 J76 82 J76 H38 H38 H 0 1 N N N 16.757 -3.917 40.470 2.577 0.670 -1.447 H38 J76 83 J76 H39 H39 H 0 1 N N N 17.531 -5.955 41.814 3.575 2.780 -0.609 H39 J76 84 J76 H40 H40 H 0 1 N N N 19.181 -5.246 41.764 3.257 2.264 1.065 H40 J76 85 J76 H41 H41 H 0 1 N N N 19.916 -4.534 39.577 5.915 2.694 0.683 H41 J76 86 J76 H42 H42 H 0 1 N N N 21.069 -3.956 37.764 6.649 -0.236 -1.121 H42 J76 87 J76 H43 H43 H 0 1 N N N 22.123 -4.600 35.639 8.731 -1.536 -0.940 H43 J76 88 J76 H44 H44 H 0 1 N N N 19.030 -7.733 37.901 7.818 2.092 2.269 H44 J76 89 J76 H45 H45 H 0 1 N N N 20.091 -8.373 35.763 9.897 0.787 2.442 H45 J76 90 J76 H46 H46 H 0 1 N N N 22.306 -7.820 34.541 11.025 -1.298 1.916 H46 J76 91 J76 H47 H47 H 0 1 N N N 22.526 -6.082 34.140 10.540 -2.264 0.502 H47 J76 92 J76 H48 H48 H 0 1 N N N 19.874 -7.339 33.599 11.492 -0.539 -1.003 H48 J76 93 J76 H49 H49 H 0 1 N N N 21.257 -7.766 32.536 11.976 0.427 0.411 H49 J76 94 J76 H50 H50 H 0 1 N N N 20.712 -4.846 33.172 13.412 -1.437 1.193 H50 J76 95 J76 H51 H51 H 0 1 N N N 19.738 -5.687 31.919 12.927 -2.404 -0.221 H51 J76 96 J76 H52 H52 H 0 1 N N N 21.766 -6.445 30.762 13.879 -0.678 -1.727 H52 J76 97 J76 H53 H53 H 0 1 N N N 22.807 -5.830 32.090 14.364 0.288 -0.313 H53 J76 98 J76 H54 H54 H 0 1 N N N 22.771 -4.238 30.166 15.800 -1.576 0.470 H54 J76 99 J76 H55 H55 H 0 1 N N N 20.984 -4.122 30.298 15.315 -2.543 -0.944 H55 J76 100 J76 H56 H56 H 0 1 N N N 22.025 -3.506 31.626 16.265 -1.055 -1.167 H56 J76 101 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J76 C12 C11 SING N N 1 J76 C11 C10 SING N N 2 J76 C10 C9 SING N N 3 J76 C9 C8 SING N N 4 J76 C8 C15 SING N N 5 J76 C15 C16 DOUB Y N 6 J76 C15 C14 SING Y N 7 J76 C16 C17 SING Y N 8 J76 C14 C13 DOUB Y N 9 J76 C17 C18 DOUB Y N 10 J76 C13 C18 SING Y N 11 J76 C18 N1 SING N N 12 J76 N1 C7 SING N N 13 J76 O C7 DOUB N N 14 J76 C7 C6 SING N N 15 J76 C25 C24 SING N N 16 J76 C24 C23 SING N N 17 J76 C5 C6 SING N N 18 J76 C5 C4 SING N N 19 J76 C23 C22 SING N N 20 J76 C22 C21 SING N N 21 J76 C4 C3 SING N N 22 J76 O32 C3 SING N N 23 J76 C3 C2 SING N N 24 J76 C21 C20 SING N N 25 J76 C20 C19 SING N N 26 J76 O1 C2 SING N N 27 J76 C2 C1 SING N N 28 J76 O2 C30 DOUB N N 29 J76 C1 N SING N N 30 J76 C1 C SING N N 31 J76 C30 N SING N N 32 J76 C30 C19 SING N N 33 J76 C OC1 SING N N 34 J76 OC1 CG1 SING N N 35 J76 OG3 CG2 SING N N 36 J76 CG1 CG2 SING N N 37 J76 CG1 OG SING N N 38 J76 CG2 CG3 SING N N 39 J76 OG CG SING N N 40 J76 CG3 OG4 SING N N 41 J76 CG3 CG4 SING N N 42 J76 CG CG4 SING N N 43 J76 CG CG5 SING N N 44 J76 OG6 CG5 SING N N 45 J76 CG4 OG5 SING N N 46 J76 C25 H1 SING N N 47 J76 C25 H2 SING N N 48 J76 C25 H3 SING N N 49 J76 C24 H4 SING N N 50 J76 C24 H5 SING N N 51 J76 C23 H6 SING N N 52 J76 C23 H7 SING N N 53 J76 C22 H8 SING N N 54 J76 C22 H9 SING N N 55 J76 C21 H10 SING N N 56 J76 C21 H11 SING N N 57 J76 C20 H12 SING N N 58 J76 C20 H13 SING N N 59 J76 C19 H14 SING N N 60 J76 C19 H15 SING N N 61 J76 N H16 SING N N 62 J76 C1 H17 SING N N 63 J76 C H18 SING N N 64 J76 C H19 SING N N 65 J76 CG1 H20 SING N N 66 J76 CG H21 SING N N 67 J76 CG5 H22 SING N N 68 J76 CG5 H23 SING N N 69 J76 OG6 H24 SING N N 70 J76 CG4 H25 SING N N 71 J76 OG5 H26 SING N N 72 J76 CG3 H27 SING N N 73 J76 OG4 H28 SING N N 74 J76 CG2 H29 SING N N 75 J76 OG3 H30 SING N N 76 J76 C2 H31 SING N N 77 J76 O1 H32 SING N N 78 J76 C3 H33 SING N N 79 J76 O32 H34 SING N N 80 J76 C4 H35 SING N N 81 J76 C4 H36 SING N N 82 J76 C5 H37 SING N N 83 J76 C5 H38 SING N N 84 J76 C6 H39 SING N N 85 J76 C6 H40 SING N N 86 J76 N1 H41 SING N N 87 J76 C17 H42 SING N N 88 J76 C16 H43 SING N N 89 J76 C13 H44 SING N N 90 J76 C14 H45 SING N N 91 J76 C8 H46 SING N N 92 J76 C8 H47 SING N N 93 J76 C9 H48 SING N N 94 J76 C9 H49 SING N N 95 J76 C10 H50 SING N N 96 J76 C10 H51 SING N N 97 J76 C11 H52 SING N N 98 J76 C11 H53 SING N N 99 J76 C12 H54 SING N N 100 J76 C12 H55 SING N N 101 J76 C12 H56 SING N N 102 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J76 SMILES ACDLabs 12.01 "CCCCCCCC(NC(COC1C(C(C(C(O1)CO)O)O)O)C(O)C(O)CCCC(=O)Nc2ccc(cc2)CCCCC)=O" J76 InChI InChI 1.03 "InChI=1S/C33H56N2O10/c1-3-5-7-8-10-14-28(39)35-24(21-44-33-32(43)31(42)30(41)26(20-36)45-33)29(40)25(37)13-11-15-27(38)34-23-18-16-22(17-19-23)12-9-6-4-2/h16-19,24-26,29-33,36-37,40-43H,3-15,20-21H2,1-2H3,(H,34,38)(H,35,39)/t24-,25+,26+,29-,30-,31-,32+,33-/m0/s1" J76 InChIKey InChI 1.03 QRKKVWUBZQVXAZ-CQFDOILESA-N J76 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCC(=O)N[C@@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)[C@H](O)[C@H](O)CCCC(=O)Nc2ccc(CCCCC)cc2" J76 SMILES CACTVS 3.385 "CCCCCCCC(=O)N[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)[CH](O)[CH](O)CCCC(=O)Nc2ccc(CCCCC)cc2" J76 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCCCCC(=O)N[C@@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)[C@@H]([C@@H](CCCC(=O)Nc2ccc(cc2)CCCCC)O)O" J76 SMILES "OpenEye OEToolkits" 2.0.6 "CCCCCCCC(=O)NC(COC1C(C(C(C(O1)CO)O)O)O)C(C(CCCC(=O)Nc2ccc(cc2)CCCCC)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J76 "SYSTEMATIC NAME" ACDLabs 12.01 "(5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(4-pentylphenyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name)" J76 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(5~{R},6~{S},7~{S})-8-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-7-(octanoylamino)-5,6-bis(oxidanyl)-~{N}-(4-pentylphenyl)octanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J76 "Create component" 2018-01-19 RCSB J76 "Initial release" 2019-01-30 RCSB J76 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id J76 _pdbx_chem_comp_synonyms.name "aGSA[8,P5p]" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##