data_J7O # _chem_comp.id J7O _chem_comp.name "5-bromanyl-~{N}-methyl-3-nitro-2-[(4~{R},5~{S})-2-(7-oxidanylisoquinolin-4-yl)carbonyl-4-phenyl-2,7-diazaspiro[4.4]nonan-7-yl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H28 Br N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-20 _chem_comp.pdbx_modified_date 2022-07-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 630.489 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J7O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EN9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J7O N1 N1 N 0 1 N N N 16.005 22.866 -18.275 3.982 -1.727 -1.478 N1 J7O 1 J7O N3 N2 N 0 1 N N N 18.048 26.224 -18.208 1.123 -0.110 1.117 N3 J7O 2 J7O C4 C1 C 0 1 Y N N 18.860 22.818 -16.887 4.152 1.008 -0.674 C4 J7O 3 J7O C5 C2 C 0 1 Y N N 20.254 22.912 -16.866 4.245 2.306 -0.218 C5 J7O 4 J7O C6 C3 C 0 1 Y N N 20.973 24.016 -17.241 3.310 2.802 0.677 C6 J7O 5 J7O C7 C4 C 0 1 Y N N 20.253 25.121 -17.686 2.275 2.005 1.120 C7 J7O 6 J7O C8 C5 C 0 1 Y N N 18.851 25.068 -17.713 2.164 0.695 0.671 C8 J7O 7 J7O C10 C6 C 0 1 N N N 16.522 27.651 -19.451 0.446 -2.356 1.628 C10 J7O 8 J7O C13 C7 C 0 1 N N N 13.081 28.694 -17.204 -3.842 -1.174 -0.533 C13 J7O 9 J7O C15 C8 C 0 1 Y N N 12.581 27.539 -15.010 -4.130 0.064 1.614 C15 J7O 10 J7O C17 C9 C 0 1 Y N N 11.607 25.303 -16.341 -5.597 2.091 0.429 C17 J7O 11 J7O C20 C10 C 0 1 Y N N 11.602 25.125 -19.137 -6.149 2.051 -2.291 C20 J7O 12 J7O C21 C11 C 0 1 Y N N 12.083 26.256 -18.523 -5.423 1.028 -1.757 C21 J7O 13 J7O C22 C12 C 0 1 Y N N 12.087 26.332 -17.090 -5.134 1.029 -0.390 C22 J7O 14 J7O C24 C13 C 0 1 N N R 16.413 29.674 -18.350 -0.625 -2.841 -0.613 C24 J7O 15 J7O C26 C14 C 0 1 Y N N 16.477 30.622 -20.666 1.181 -4.531 -0.999 C26 J7O 16 J7O C28 C15 C 0 1 Y N N 18.471 31.725 -21.472 1.376 -6.485 0.371 C28 J7O 17 J7O C1 C16 C 0 1 N N N 14.546 22.751 -18.334 3.875 -3.106 -1.959 C1 J7O 18 J7O C11 C17 C 0 1 N N S 16.579 28.114 -18.326 -0.440 -1.808 0.504 C11 J7O 19 J7O C12 C18 C 0 1 N N N 15.615 27.664 -17.594 -1.848 -1.481 1.016 C12 J7O 20 J7O C14 C19 C 0 1 Y N N 12.586 27.479 -16.404 -4.360 -0.035 0.248 C14 J7O 21 J7O C16 C20 C 0 1 Y N N 11.660 25.422 -14.906 -5.287 2.069 1.799 C16 J7O 22 J7O C18 C21 C 0 1 Y N N 11.120 24.155 -16.953 -6.338 3.132 -0.150 C18 J7O 23 J7O C19 C22 C 0 1 Y N N 11.117 24.080 -18.355 -6.609 3.099 -1.490 C19 J7O 24 J7O C2 C23 C 0 1 N N N 16.648 23.838 -17.349 2.996 -1.196 -0.728 C2 J7O 25 J7O C23 C24 C 0 1 N N N 14.887 29.813 -18.440 -2.153 -3.067 -0.684 C23 J7O 26 J7O C25 C25 C 0 1 Y N N 17.096 30.360 -19.467 0.083 -4.125 -0.263 C25 J7O 27 J7O C27 C26 C 0 1 Y N N 17.170 31.302 -21.685 1.827 -5.711 -0.682 C27 J7O 28 J7O C29 C27 C 0 1 Y N N 19.081 31.482 -20.278 0.285 -6.073 1.113 C29 J7O 29 J7O C3 C28 C 0 1 Y N N 18.150 23.917 -17.320 3.106 0.190 -0.239 C3 J7O 30 J7O C30 C29 C 0 1 Y N N 18.390 30.803 -19.256 -0.365 -4.896 0.793 C30 J7O 31 J7O C31 C30 C 0 1 N N N 18.012 27.633 -17.673 0.265 -0.549 -0.017 C31 J7O 32 J7O C9 C31 C 0 1 N N N 17.417 26.222 -19.391 1.640 -1.376 1.699 C9 J7O 33 J7O N2 N3 N 1 1 N N N 21.009 26.253 -18.106 1.282 2.545 2.076 N2 J7O 34 J7O N4 N4 N 0 1 N N N 14.438 28.787 -17.748 -2.742 -1.832 -0.116 N4 J7O 35 J7O N5 N5 N 0 1 Y N N 12.124 26.506 -14.324 -4.593 1.084 2.317 N5 J7O 36 J7O O1 O1 O 0 1 N N N 16.029 24.523 -16.661 2.015 -1.862 -0.454 O1 J7O 37 J7O O2 O2 O 0 1 N N N 21.997 26.557 -17.499 1.324 3.719 2.399 O2 J7O 38 J7O O3 O3 O -1 1 N N N 20.611 26.937 -19.254 0.423 1.816 2.539 O3 J7O 39 J7O O4 O4 O 0 1 N N N 12.340 29.617 -17.400 -4.407 -1.520 -1.552 O4 J7O 40 J7O O5 O5 O 0 1 N N N 10.633 22.924 -18.984 -7.331 4.105 -2.052 O5 J7O 41 J7O BR1 BR1 BR 0 0 N N N 21.221 21.391 -16.255 5.657 3.413 -0.814 BR1 J7O 42 J7O H1 H1 H 0 1 N N N 16.573 22.288 -18.861 4.764 -1.196 -1.697 H1 J7O 43 J7O H2 H2 H 0 1 N N N 18.356 21.915 -16.575 4.883 0.626 -1.371 H2 J7O 44 J7O H3 H3 H 0 1 N N N 22.052 24.029 -17.193 3.391 3.820 1.028 H3 J7O 45 J7O H4 H4 H 0 1 N N N 16.961 28.350 -20.178 -0.098 -2.360 2.573 H4 J7O 46 J7O H5 H5 H 0 1 N N N 15.479 27.441 -19.729 0.792 -3.360 1.384 H5 J7O 47 J7O H6 H6 H 0 1 N N N 12.946 28.418 -14.499 -3.566 -0.710 2.114 H6 J7O 48 J7O H7 H7 H 0 1 N N N 11.600 25.047 -20.214 -6.372 2.050 -3.348 H7 J7O 49 J7O H8 H8 H 0 1 N N N 12.455 27.080 -19.113 -5.074 0.222 -2.386 H8 J7O 50 J7O H9 H9 H 0 1 N N N 16.759 30.083 -17.389 -0.254 -2.449 -1.559 H9 J7O 51 J7O H10 H10 H 0 1 N N N 15.457 30.305 -20.826 1.531 -3.929 -1.824 H10 J7O 52 J7O H11 H11 H 0 1 N N N 19.003 32.248 -22.253 1.883 -7.405 0.621 H11 J7O 53 J7O H12 H12 H 0 1 N N N 14.268 21.985 -19.072 4.760 -3.356 -2.544 H12 J7O 54 J7O H13 H13 H 0 1 N N N 14.161 22.464 -17.345 3.799 -3.783 -1.108 H13 J7O 55 J7O H14 H14 H 0 1 N N N 14.114 23.718 -18.629 2.987 -3.206 -2.583 H14 J7O 56 J7O H15 H15 H 0 1 N N N 15.271 26.685 -17.960 -2.086 -2.087 1.890 H15 J7O 57 J7O H16 H16 H 0 1 N N N 15.932 27.572 -16.545 -1.931 -0.421 1.254 H16 J7O 58 J7O H17 H17 H 0 1 N N N 11.311 24.603 -14.295 -5.632 2.870 2.436 H17 J7O 59 J7O H18 H18 H 0 1 N N N 10.749 23.333 -16.359 -6.692 3.952 0.457 H18 J7O 60 J7O H19 H19 H 0 1 N N N 14.553 30.762 -17.996 -2.470 -3.198 -1.719 H19 J7O 61 J7O H20 H20 H 0 1 N N N 14.549 29.759 -19.485 -2.437 -3.934 -0.087 H20 J7O 62 J7O H21 H21 H 0 1 N N N 16.687 31.494 -22.632 2.685 -6.028 -1.256 H21 J7O 63 J7O H22 H22 H 0 1 N N N 20.097 31.811 -20.115 -0.060 -6.671 1.944 H22 J7O 64 J7O H23 H23 H 0 1 N N N 18.871 30.628 -18.305 -1.222 -4.578 1.368 H23 J7O 65 J7O H24 H24 H 0 1 N N N 18.856 28.236 -18.039 -0.466 0.223 -0.262 H24 J7O 66 J7O H25 H25 H 0 1 N N N 17.994 27.657 -16.573 0.876 -0.786 -0.888 H25 J7O 67 J7O H26 H26 H 0 1 N N N 16.750 25.351 -19.465 2.476 -1.753 1.109 H26 J7O 68 J7O H27 H27 H 0 1 N N N 18.148 26.195 -20.213 1.945 -1.222 2.734 H27 J7O 69 J7O H28 H28 H 0 1 N N N 10.339 22.305 -18.326 -8.285 3.948 -2.057 H28 J7O 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J7O C27 C28 DOUB Y N 1 J7O C27 C26 SING Y N 2 J7O C28 C29 SING Y N 3 J7O C26 C25 DOUB Y N 4 J7O C29 C30 DOUB Y N 5 J7O C25 C30 SING Y N 6 J7O C25 C24 SING N N 7 J7O C10 C9 SING N N 8 J7O C10 C11 SING N N 9 J7O C9 N3 SING N N 10 J7O O3 N2 SING N N 11 J7O C20 C21 DOUB Y N 12 J7O C20 C19 SING Y N 13 J7O O5 C19 SING N N 14 J7O C21 C22 SING Y N 15 J7O C23 C24 SING N N 16 J7O C23 N4 SING N N 17 J7O C19 C18 DOUB Y N 18 J7O C24 C11 SING N N 19 J7O C1 N1 SING N N 20 J7O C11 C31 SING N N 21 J7O C11 C12 SING N N 22 J7O N1 C2 SING N N 23 J7O N3 C8 SING N N 24 J7O N3 C31 SING N N 25 J7O N2 C7 SING N N 26 J7O N2 O2 DOUB N N 27 J7O N4 C12 SING N N 28 J7O N4 C13 SING N N 29 J7O C8 C7 DOUB Y N 30 J7O C8 C3 SING Y N 31 J7O C7 C6 SING Y N 32 J7O O4 C13 DOUB N N 33 J7O C2 C3 SING N N 34 J7O C2 O1 DOUB N N 35 J7O C3 C4 DOUB Y N 36 J7O C6 C5 DOUB Y N 37 J7O C13 C14 SING N N 38 J7O C22 C14 DOUB Y N 39 J7O C22 C17 SING Y N 40 J7O C18 C17 SING Y N 41 J7O C4 C5 SING Y N 42 J7O C5 BR1 SING N N 43 J7O C14 C15 SING Y N 44 J7O C17 C16 DOUB Y N 45 J7O C15 N5 DOUB Y N 46 J7O C16 N5 SING Y N 47 J7O N1 H1 SING N N 48 J7O C4 H2 SING N N 49 J7O C6 H3 SING N N 50 J7O C10 H4 SING N N 51 J7O C10 H5 SING N N 52 J7O C15 H6 SING N N 53 J7O C20 H7 SING N N 54 J7O C21 H8 SING N N 55 J7O C24 H9 SING N N 56 J7O C26 H10 SING N N 57 J7O C28 H11 SING N N 58 J7O C1 H12 SING N N 59 J7O C1 H13 SING N N 60 J7O C1 H14 SING N N 61 J7O C12 H15 SING N N 62 J7O C12 H16 SING N N 63 J7O C16 H17 SING N N 64 J7O C18 H18 SING N N 65 J7O C23 H19 SING N N 66 J7O C23 H20 SING N N 67 J7O C27 H21 SING N N 68 J7O C29 H22 SING N N 69 J7O C30 H23 SING N N 70 J7O C31 H24 SING N N 71 J7O C31 H25 SING N N 72 J7O C9 H26 SING N N 73 J7O C9 H27 SING N N 74 J7O O5 H28 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J7O InChI InChI 1.03 "InChI=1S/C31H28BrN5O5/c1-33-29(39)24-12-21(32)13-27(37(41)42)28(24)35-10-9-31(17-35)18-36(16-26(31)19-5-3-2-4-6-19)30(40)25-15-34-14-20-11-22(38)7-8-23(20)25/h2-8,11-15,26,38H,9-10,16-18H2,1H3,(H,33,39)/t26-,31+/m1/s1" J7O InChIKey InChI 1.03 CFAZYCDVXXGVDB-NEEKEDPPSA-N J7O SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1cc(Br)cc(c1N2CC[C@]3(C2)CN(C[C@@H]3c4ccccc4)C(=O)c5cncc6cc(O)ccc56)[N+]([O-])=O" J7O SMILES CACTVS 3.385 "CNC(=O)c1cc(Br)cc(c1N2CC[C]3(C2)CN(C[CH]3c4ccccc4)C(=O)c5cncc6cc(O)ccc56)[N+]([O-])=O" J7O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1cc(cc(c1N2CC[C@]3(C2)CN(C[C@@H]3c4ccccc4)C(=O)c5cncc6c5ccc(c6)O)[N+](=O)[O-])Br" J7O SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1cc(cc(c1N2CCC3(C2)CN(CC3c4ccccc4)C(=O)c5cncc6c5ccc(c6)O)[N+](=O)[O-])Br" # _pdbx_chem_comp_identifier.comp_id J7O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-bromanyl-~{N}-methyl-3-nitro-2-[(4~{R},5~{S})-2-(7-oxidanylisoquinolin-4-yl)carbonyl-4-phenyl-2,7-diazaspiro[4.4]nonan-7-yl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J7O "Create component" 2021-04-20 PDBJ J7O "Initial release" 2022-07-20 RCSB #