data_J7W # _chem_comp.id J7W _chem_comp.name "N-[3-[[4-[4,6-bis(azanyl)pyrimidin-2-yl]-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N9 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-25 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.660 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J7W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZI2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J7W N1 N1 N 0 1 Y N N -12.276 -27.976 10.003 7.646 0.794 0.828 N1 J7W 1 J7W N3 N2 N 0 1 N N N -13.679 -26.213 9.998 9.786 0.827 1.816 N3 J7W 2 J7W C4 C1 C 0 1 Y N N -10.085 -26.414 9.565 8.003 3.214 -0.325 C4 J7W 3 J7W C5 C2 C 0 1 Y N N -10.934 -29.929 10.020 5.425 0.627 -0.124 C5 J7W 4 J7W C6 C3 C 0 1 Y N N -11.721 -31.993 9.795 4.030 -1.100 0.176 C6 J7W 5 J7W C7 C4 C 0 1 Y N N -9.856 -30.620 10.480 4.424 1.129 -0.870 C7 J7W 6 J7W C8 C5 C 0 1 Y N N -12.274 -34.323 9.175 2.282 -2.741 0.431 C8 J7W 7 J7W C10 C6 C 0 1 Y N N -11.140 -36.398 9.581 -0.040 -2.214 0.115 C10 J7W 8 J7W C13 C7 C 0 1 Y N N -12.895 -34.854 8.050 1.988 -4.094 0.303 C13 J7W 9 J7W C15 C8 C 0 1 N N N -9.538 -37.051 11.364 -2.112 -1.493 -0.803 C15 J7W 10 J7W C17 C9 C 0 1 Y N N -9.398 -39.518 11.784 -4.335 -0.779 -1.671 C17 J7W 11 J7W C20 C10 C 0 1 Y N N -6.865 -39.243 12.877 -4.308 1.452 -0.022 C20 J7W 12 J7W C21 C11 C 0 1 Y N N -7.537 -38.133 12.396 -3.243 0.576 0.002 C21 J7W 13 J7W C22 C12 C 0 1 N N N -6.699 -41.721 13.320 -6.540 2.181 -0.887 C22 J7W 14 J7W C24 C13 C 0 1 N N N -3.806 -41.631 10.894 -9.127 0.044 0.824 C24 J7W 15 J7W C26 C14 C 0 1 N N N -4.806 -43.205 13.017 -8.570 2.800 0.280 C26 J7W 16 J7W C1 C15 C 0 1 Y N N -11.042 -28.484 9.902 6.701 1.349 0.081 C1 J7W 17 J7W C2 C16 C 0 1 Y N N -12.435 -26.658 9.894 8.804 1.415 1.034 C2 J7W 18 J7W C3 C17 C 0 1 Y N N -11.341 -25.804 9.651 9.017 2.662 0.453 C3 J7W 19 J7W N2 N3 N 0 1 Y N N -9.943 -27.741 9.682 6.870 2.536 -0.488 N2 J7W 20 J7W N4 N4 N 0 1 N N N -8.987 -25.698 9.336 8.172 4.453 -0.923 N4 J7W 21 J7W N5 N5 N 0 1 Y N N -12.013 -30.731 9.649 5.185 -0.566 0.421 N5 J7W 22 J7W S1 S1 S 0 1 Y N N -10.127 -32.316 10.361 3.095 -0.028 -0.862 S1 J7W 23 J7W N6 N6 N 0 1 N N N -12.578 -33.000 9.523 3.599 -2.329 0.651 N6 J7W 24 J7W C9 C18 C 0 1 Y N N -11.383 -35.080 9.936 1.267 -1.800 0.334 C9 J7W 25 J7W C11 C19 C 0 1 Y N N -11.753 -36.941 8.463 -0.327 -3.567 -0.006 C11 J7W 26 J7W C12 C20 C 0 1 Y N N -12.622 -36.176 7.713 0.687 -4.502 0.085 C12 J7W 27 J7W C14 C21 C 0 1 N N N -13.859 -34.045 7.229 3.091 -5.116 0.402 C14 J7W 28 J7W N7 N7 N 0 1 N N N -10.247 -37.263 10.238 -1.066 -1.268 0.016 N7 J7W 29 J7W C16 C22 C 0 1 Y N N -8.808 -38.259 11.855 -3.250 -0.549 -0.824 C16 J7W 30 J7W O1 O1 O 0 1 N N N -9.505 -35.979 11.974 -2.121 -2.472 -1.523 O1 J7W 31 J7W C18 C23 C 0 1 Y N N -8.725 -40.627 12.270 -5.394 0.106 -1.686 C18 J7W 32 J7W C19 C24 C 0 1 Y N N -7.446 -40.505 12.816 -5.381 1.219 -0.864 C19 J7W 33 J7W N8 N8 N 0 1 N N N -5.333 -41.857 12.792 -7.542 1.765 0.104 N8 J7W 34 J7W C23 C25 C 0 1 N N N -5.239 -41.550 11.361 -8.150 0.481 -0.271 C23 J7W 35 J7W N9 N9 N 0 1 N N N -3.268 -42.968 11.119 -10.155 1.079 1.000 N9 J7W 36 J7W C25 C26 C 0 1 N N N -3.376 -43.298 12.538 -9.547 2.363 1.375 C25 J7W 37 J7W C27 C27 C 0 1 N N N -1.882 -43.065 10.654 -11.157 0.663 1.991 C27 J7W 38 J7W H1 H1 H 0 1 N N N -14.298 -26.984 10.146 9.632 -0.042 2.218 H1 J7W 39 J7W H2 H2 H 0 1 N N N -13.743 -25.581 10.770 10.629 1.286 1.962 H2 J7W 40 J7W H3 H3 H 0 1 N N N -8.955 -30.167 10.866 4.433 2.079 -1.384 H3 J7W 41 J7W H4 H4 H 0 1 N N N -10.381 -39.630 11.350 -4.345 -1.645 -2.316 H4 J7W 42 J7W H5 H5 H 0 1 N N N -5.880 -39.128 13.304 -4.304 2.323 0.617 H5 J7W 43 J7W H6 H6 H 0 1 N N N -7.068 -37.161 12.442 -2.406 0.759 0.660 H6 J7W 44 J7W H7 H7 H 0 1 N N N -7.269 -42.618 13.035 -6.185 3.183 -0.646 H7 J7W 45 J7W H8 H8 H 0 1 N N N -6.639 -41.658 14.417 -6.990 2.185 -1.880 H8 J7W 46 J7W H9 H9 H 0 1 N N N -3.202 -40.900 11.451 -9.601 -0.894 0.535 H9 J7W 47 J7W H10 H10 H 0 1 N N N -3.762 -41.400 9.819 -8.586 -0.095 1.760 H10 J7W 48 J7W H11 H11 H 0 1 N N N -5.421 -43.931 12.465 -8.095 3.738 0.570 H11 J7W 49 J7W H12 H12 H 0 1 N N N -4.844 -43.434 14.092 -9.110 2.939 -0.656 H12 J7W 50 J7W H13 H13 H 0 1 N N N -11.465 -24.737 9.537 9.948 3.189 0.603 H13 J7W 51 J7W H14 H14 H 0 1 N N N -8.195 -26.307 9.287 9.001 4.942 -0.800 H14 J7W 52 J7W H15 H15 H 0 1 N N N -9.084 -25.207 8.470 7.461 4.832 -1.464 H15 J7W 53 J7W H16 H16 H 0 1 N N N -13.551 -32.774 9.576 4.212 -2.903 1.136 H16 J7W 54 J7W H17 H17 H 0 1 N N N -10.888 -34.645 10.792 1.493 -0.748 0.428 H17 J7W 55 J7W H18 H18 H 0 1 N N N -11.550 -37.963 8.179 -1.344 -3.890 -0.176 H18 J7W 56 J7W H19 H19 H 0 1 N N N -13.100 -36.612 6.848 0.461 -5.553 -0.014 H19 J7W 57 J7W H20 H20 H 0 1 N N N -14.877 -34.172 7.627 3.207 -5.426 1.441 H20 J7W 58 J7W H21 H21 H 0 1 N N N -13.578 -32.983 7.275 2.839 -5.983 -0.209 H21 J7W 59 J7W H22 H22 H 0 1 N N N -13.828 -34.388 6.184 4.024 -4.680 0.047 H22 J7W 60 J7W H23 H23 H 0 1 N N N -10.121 -38.158 9.811 -1.024 -0.451 0.537 H23 J7W 61 J7W H24 H24 H 0 1 N N N -9.196 -41.598 12.226 -6.234 -0.071 -2.341 H24 J7W 62 J7W H26 H26 H 0 1 N N N -5.620 -40.534 11.183 -7.370 -0.272 -0.383 H26 J7W 63 J7W H27 H27 H 0 1 N N N -5.845 -42.273 10.795 -8.686 0.593 -1.213 H27 J7W 64 J7W H29 H29 H 0 1 N N N -3.011 -44.324 12.696 -9.010 2.251 2.317 H29 J7W 65 J7W H30 H30 H 0 1 N N N -2.758 -42.596 13.117 -10.327 3.116 1.487 H30 J7W 66 J7W H31 H31 H 0 1 N N N -1.504 -44.082 10.836 -10.668 0.488 2.950 H31 J7W 67 J7W H32 H32 H 0 1 N N N -1.841 -42.846 9.577 -11.906 1.447 2.102 H32 J7W 68 J7W H33 H33 H 0 1 N N N -1.261 -42.340 11.200 -11.639 -0.256 1.656 H33 J7W 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J7W C14 C13 SING N N 1 J7W C12 C13 DOUB Y N 2 J7W C12 C11 SING Y N 3 J7W C13 C8 SING Y N 4 J7W C11 C10 DOUB Y N 5 J7W C8 N6 SING N N 6 J7W C8 C9 DOUB Y N 7 J7W N4 C4 SING N N 8 J7W N6 C6 SING N N 9 J7W C4 C3 DOUB Y N 10 J7W C4 N2 SING Y N 11 J7W C10 C9 SING Y N 12 J7W C10 N7 SING N N 13 J7W N5 C6 DOUB Y N 14 J7W N5 C5 SING Y N 15 J7W C3 C2 SING Y N 16 J7W N2 C1 DOUB Y N 17 J7W C6 S1 SING Y N 18 J7W C2 N3 SING N N 19 J7W C2 N1 DOUB Y N 20 J7W C1 N1 SING Y N 21 J7W C1 C5 SING N N 22 J7W C5 C7 DOUB Y N 23 J7W N7 C15 SING N N 24 J7W S1 C7 SING Y N 25 J7W C27 N9 SING N N 26 J7W C24 N9 SING N N 27 J7W C24 C23 SING N N 28 J7W N9 C25 SING N N 29 J7W C23 N8 SING N N 30 J7W C15 C16 SING N N 31 J7W C15 O1 DOUB N N 32 J7W C17 C16 DOUB Y N 33 J7W C17 C18 SING Y N 34 J7W C16 C21 SING Y N 35 J7W C18 C19 DOUB Y N 36 J7W C21 C20 DOUB Y N 37 J7W C25 C26 SING N N 38 J7W N8 C26 SING N N 39 J7W N8 C22 SING N N 40 J7W C19 C20 SING Y N 41 J7W C19 C22 SING N N 42 J7W N3 H1 SING N N 43 J7W N3 H2 SING N N 44 J7W C7 H3 SING N N 45 J7W C17 H4 SING N N 46 J7W C20 H5 SING N N 47 J7W C21 H6 SING N N 48 J7W C22 H7 SING N N 49 J7W C22 H8 SING N N 50 J7W C24 H9 SING N N 51 J7W C24 H10 SING N N 52 J7W C26 H11 SING N N 53 J7W C26 H12 SING N N 54 J7W C3 H13 SING N N 55 J7W N4 H14 SING N N 56 J7W N4 H15 SING N N 57 J7W N6 H16 SING N N 58 J7W C9 H17 SING N N 59 J7W C11 H18 SING N N 60 J7W C12 H19 SING N N 61 J7W C14 H20 SING N N 62 J7W C14 H21 SING N N 63 J7W C14 H22 SING N N 64 J7W N7 H23 SING N N 65 J7W C18 H24 SING N N 66 J7W C23 H26 SING N N 67 J7W C23 H27 SING N N 68 J7W C25 H29 SING N N 69 J7W C25 H30 SING N N 70 J7W C27 H31 SING N N 71 J7W C27 H32 SING N N 72 J7W C27 H33 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J7W InChI InChI 1.06 "InChI=1S/C27H31N9OS/c1-17-3-8-20(13-21(17)31-27-32-22(16-38-27)25-33-23(28)14-24(29)34-25)30-26(37)19-6-4-18(5-7-19)15-36-11-9-35(2)10-12-36/h3-8,13-14,16H,9-12,15H2,1-2H3,(H,30,37)(H,31,32)(H4,28,29,33,34)" J7W InChIKey InChI 1.06 AWHDUBFHMBQEJL-UHFFFAOYSA-N J7W SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)Nc3ccc(C)c(Nc4scc(n4)c5nc(N)cc(N)n5)c3" J7W SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)Nc3ccc(C)c(Nc4scc(n4)c5nc(N)cc(N)n5)c3" J7W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Nc2nc(cs2)c3nc(cc(n3)N)N)NC(=O)c4ccc(cc4)CN5CCN(CC5)C" J7W SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1Nc2nc(cs2)c3nc(cc(n3)N)N)NC(=O)c4ccc(cc4)CN5CCN(CC5)C" # _pdbx_chem_comp_identifier.comp_id J7W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[[4-[4,6-bis(azanyl)pyrimidin-2-yl]-1,3-thiazol-2-yl]amino]-4-methyl-phenyl]-4-[(4-methylpiperazin-1-yl)methyl]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J7W "Create component" 2022-04-25 PDBE J7W "Modify descriptor" 2022-08-22 RCSB J7W "Initial release" 2023-06-07 RCSB #