data_J81 # _chem_comp.id J81 _chem_comp.name "(5R,6S,7S)-5,6-dihydroxy-N-nonyl-7-(octanoylamino)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H60 N2 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-17 _chem_comp.pdbx_modified_date 2019-01-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 620.815 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J81 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C5M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J81 C9 C1 C 0 1 N N N 22.135 -3.985 30.577 17.108 -1.197 0.921 C9 J81 1 J81 C8 C2 C 0 1 N N N 21.494 -5.343 30.839 15.910 -0.249 1.019 C8 J81 2 J81 C7 C3 C 0 1 N N N 21.879 -5.545 32.263 14.637 -0.992 0.608 C7 J81 3 J81 C6 C4 C 0 1 N N N 21.010 -6.647 32.858 13.440 -0.044 0.706 C6 J81 4 J81 C5 C5 C 0 1 N N N 21.834 -7.199 34.027 12.167 -0.786 0.295 C5 J81 5 J81 C4 C6 C 0 1 N N N 21.608 -6.304 35.224 10.970 0.161 0.394 C4 J81 6 J81 C3 C7 C 0 1 N N N 20.308 -6.734 35.859 9.696 -0.581 -0.017 C3 J81 7 J81 C2 C8 C 0 1 N N N 20.333 -5.963 37.154 8.499 0.366 0.081 C2 J81 8 J81 C1 C9 C 0 1 N N N 19.096 -6.426 37.907 7.226 -0.376 -0.330 C1 J81 9 J81 N2 N1 N 0 1 N N N 19.012 -5.707 39.179 6.080 0.531 -0.236 N2 J81 10 J81 C18 C10 C 0 1 N N N 18.039 -5.991 40.028 4.845 0.093 -0.552 C18 J81 11 J81 O O1 O 0 1 N N N 17.187 -6.843 39.809 4.683 -1.054 -0.914 O J81 12 J81 C19 C11 C 0 1 N N N 18.068 -5.205 41.324 3.666 1.026 -0.455 C19 J81 13 J81 C20 C12 C 0 1 N N N 17.656 -3.762 41.076 2.393 0.283 -0.866 C20 J81 14 J81 C21 C13 C 0 1 N N N 17.288 -3.088 42.409 1.196 1.231 -0.768 C21 J81 15 J81 C22 C14 C 0 1 N N R 18.414 -3.175 43.454 -0.077 0.489 -1.179 C22 J81 16 J81 O3 O2 O 0 1 N N N 19.673 -2.895 42.837 -0.344 -0.555 -0.240 O3 J81 17 J81 C23 C15 C 0 1 N N S 18.223 -2.169 44.607 -1.253 1.467 -1.201 C23 J81 18 J81 O2 O3 O 0 1 N N N 18.291 -0.835 44.099 -0.987 2.511 -2.139 O2 J81 19 J81 C24 C16 C 0 1 N N S 16.892 -2.373 45.360 -2.527 0.725 -1.612 C24 J81 20 J81 C25 C17 C 0 1 N N N 16.903 -1.552 46.661 -3.673 1.726 -1.767 C25 J81 21 J81 O5 O4 O 0 1 N N N 17.942 -2.075 47.508 -3.827 2.466 -0.554 O5 J81 22 J81 C28 C18 C 0 1 N N S 18.037 -1.516 48.834 -4.878 3.434 -0.594 C28 J81 23 J81 O9 O5 O 0 1 N N N 16.850 -1.741 49.614 -6.141 2.766 -0.613 O9 J81 24 J81 C27 C19 C 0 1 N N R 16.458 -3.131 49.757 -6.367 1.913 0.512 C27 J81 25 J81 C26 C20 C 0 1 N N N 15.251 -3.093 50.683 -7.730 1.233 0.370 C26 J81 26 J81 O8 O6 O 0 1 N N N 14.209 -2.547 49.859 -7.714 0.365 -0.765 O8 J81 27 J81 C31 C21 C 0 1 N N R 17.593 -4.007 50.349 -6.343 2.747 1.796 C31 J81 28 J81 O7 O7 O 0 1 N N N 17.645 -3.886 51.790 -7.401 3.706 1.762 O7 J81 29 J81 C30 C22 C 0 1 N N S 18.986 -3.667 49.736 -4.998 3.472 1.899 C30 J81 30 J81 O4 O8 O 0 1 N N N 20.028 -4.218 50.569 -4.994 4.310 3.057 O4 J81 31 J81 C29 C23 C 0 1 N N R 19.218 -2.152 49.569 -4.794 4.328 0.646 C29 J81 32 J81 O6 O9 O 0 1 N N N 20.424 -1.922 48.828 -3.510 4.953 0.698 O6 J81 33 J81 N1 N2 N 0 1 N N N 16.745 -3.794 45.718 -2.873 -0.258 -0.582 N1 J81 34 J81 C17 C24 C 0 1 N N N 15.584 -4.475 45.687 -3.605 -1.343 -0.904 C17 J81 35 J81 O1 O10 O 0 1 N N N 14.491 -3.986 45.383 -3.977 -1.506 -2.047 O1 J81 36 J81 C10 C25 C 0 1 N N N 15.757 -5.922 46.134 -3.961 -2.354 0.155 C10 J81 37 J81 C11 C26 C 0 1 N N N 14.430 -6.699 46.051 -4.789 -3.478 -0.470 C11 J81 38 J81 C12 C27 C 0 1 N N N 13.962 -6.949 44.605 -5.150 -4.504 0.605 C12 J81 39 J81 C13 C28 C 0 1 N N N 14.739 -8.058 43.876 -5.978 -5.629 -0.020 C13 J81 40 J81 C14 C29 C 0 1 N N N 13.833 -8.683 42.795 -6.340 -6.655 1.056 C14 J81 41 J81 C15 C30 C 0 1 N N N 14.643 -9.101 41.562 -7.168 -7.779 0.430 C15 J81 42 J81 C16 C31 C 0 1 N N N 13.710 -9.629 40.455 -7.529 -8.806 1.506 C16 J81 43 J81 H1 H1 H 0 1 N N N 21.939 -3.681 29.538 18.014 -0.668 1.214 H1 J81 44 J81 H2 H2 H 0 1 N N N 21.708 -3.240 31.264 16.953 -2.048 1.584 H2 J81 45 J81 H3 H3 H 0 1 N N N 23.221 -4.055 30.740 17.208 -1.550 -0.105 H3 J81 46 J81 H4 H4 H 0 1 N N N 20.402 -5.309 30.713 15.810 0.104 2.045 H4 J81 47 J81 H5 H5 H 0 1 N N N 21.914 -6.124 30.189 16.065 0.601 0.355 H5 J81 48 J81 H6 H6 H 0 1 N N N 22.938 -5.838 32.321 14.738 -1.345 -0.418 H6 J81 49 J81 H7 H7 H 0 1 N N N 21.725 -4.611 32.823 14.482 -1.842 1.272 H7 J81 50 J81 H8 H8 H 0 1 N N N 20.054 -6.237 33.216 13.339 0.309 1.732 H8 J81 51 J81 H9 H9 H 0 1 N N N 20.816 -7.433 32.114 13.595 0.807 0.043 H9 J81 52 J81 H10 H10 H 0 1 N N N 21.510 -8.224 34.261 12.267 -1.140 -0.731 H10 J81 53 J81 H11 H11 H 0 1 N N N 22.901 -7.204 33.761 12.012 -1.637 0.959 H11 J81 54 J81 H12 H12 H 0 1 N N N 22.434 -6.417 35.941 10.869 0.515 1.420 H12 J81 55 J81 H13 H13 H 0 1 N N N 21.542 -5.254 34.903 11.124 1.012 -0.270 H13 J81 56 J81 H14 H14 H 0 1 N N N 19.445 -6.449 35.239 9.797 -0.935 -1.043 H14 J81 57 J81 H15 H15 H 0 1 N N N 20.289 -7.819 36.038 9.542 -1.432 0.646 H15 J81 58 J81 H16 H16 H 0 1 N N N 21.244 -6.195 37.725 8.399 0.720 1.107 H16 J81 59 J81 H17 H17 H 0 1 N N N 20.287 -4.881 36.961 8.654 1.217 -0.583 H17 J81 60 J81 H18 H18 H 0 1 N N N 18.199 -6.217 37.306 7.327 -0.729 -1.356 H18 J81 61 J81 H19 H19 H 0 1 N N N 19.165 -7.507 38.099 7.071 -1.227 0.334 H19 J81 62 J81 H20 H20 H 0 1 N N N 19.687 -5.005 39.405 6.209 1.448 0.053 H20 J81 63 J81 H21 H21 H 0 1 N N N 17.371 -5.663 42.042 3.566 1.379 0.571 H21 J81 64 J81 H22 H22 H 0 1 N N N 19.087 -5.225 41.738 3.821 1.877 -1.119 H22 J81 65 J81 H23 H23 H 0 1 N N N 18.492 -3.219 40.611 2.493 -0.070 -1.892 H23 J81 66 J81 H24 H24 H 0 1 N N N 16.785 -3.741 40.404 2.238 -0.567 -0.202 H24 J81 67 J81 H25 H25 H 0 1 N N N 17.068 -2.027 42.217 1.095 1.584 0.258 H25 J81 68 J81 H26 H26 H 0 1 N N N 16.392 -3.580 42.816 1.350 2.082 -1.431 H26 J81 69 J81 H27 H27 H 0 1 N N N 18.420 -4.191 43.876 0.057 0.059 -2.171 H27 J81 70 J81 H28 H28 H 0 1 N N N 20.364 -2.950 43.487 -0.474 -0.245 0.667 H28 J81 71 J81 H29 H29 H 0 1 N N N 19.041 -2.324 45.326 -1.388 1.896 -0.208 H29 J81 72 J81 H30 H30 H 0 1 N N N 18.173 -0.218 44.812 -0.830 2.199 -3.041 H30 J81 73 J81 H31 H31 H 0 1 N N N 16.056 -2.047 44.724 -2.359 0.213 -2.560 H31 J81 74 J81 H32 H32 H 0 1 N N N 17.104 -0.495 46.433 -3.449 2.411 -2.585 H32 J81 75 J81 H33 H33 H 0 1 N N N 15.930 -1.640 47.166 -4.597 1.189 -1.985 H33 J81 76 J81 H34 H34 H 0 1 N N N 18.223 -0.434 48.759 -4.776 4.044 -1.490 H34 J81 77 J81 H35 H35 H 0 1 N N N 16.157 -3.545 48.783 -5.585 1.155 0.556 H35 J81 78 J81 H36 H36 H 0 1 N N N 14.989 -4.104 51.028 -7.942 0.653 1.269 H36 J81 79 J81 H37 H37 H 0 1 N N N 15.443 -2.447 51.552 -8.502 1.991 0.237 H37 J81 80 J81 H38 H38 H 0 1 N N N 13.406 -2.486 50.362 -8.548 -0.101 -0.916 H38 J81 81 J81 H39 H39 H 0 1 N N N 17.369 -5.053 50.091 -6.472 2.092 2.658 H39 J81 82 J81 H40 H40 H 0 1 N N N 16.794 -4.094 52.157 -7.446 4.271 2.546 H40 J81 83 J81 H41 H41 H 0 1 N N N 19.036 -4.130 48.739 -4.194 2.740 1.977 H41 J81 84 J81 H42 H42 H 0 1 N N N 19.889 -5.152 50.675 -4.171 4.800 3.185 H42 J81 85 J81 H43 H43 H 0 1 N N N 19.298 -1.698 50.568 -5.570 5.092 0.597 H43 J81 86 J81 H44 H44 H 0 1 N N N 21.157 -2.317 49.285 -3.311 5.508 -0.068 H44 J81 87 J81 H45 H45 H 0 1 N N N 17.566 -4.288 46.004 -2.575 -0.128 0.332 H45 J81 88 J81 H46 H46 H 0 1 N N N 16.499 -6.411 45.485 -3.048 -2.769 0.582 H46 J81 89 J81 H47 H47 H 0 1 N N N 16.115 -5.935 47.174 -4.541 -1.869 0.940 H47 J81 90 J81 H48 H48 H 0 1 N N N 13.654 -6.122 46.575 -5.701 -3.063 -0.897 H48 J81 91 J81 H49 H49 H 0 1 N N N 14.562 -7.671 46.548 -4.208 -3.963 -1.255 H49 J81 92 J81 H50 H50 H 0 1 N N N 14.080 -6.014 44.037 -4.238 -4.920 1.033 H50 J81 93 J81 H51 H51 H 0 1 N N N 12.899 -7.231 44.630 -5.730 -4.019 1.390 H51 J81 94 J81 H52 H52 H 0 1 N N N 15.040 -8.832 44.597 -6.891 -5.213 -0.447 H52 J81 95 J81 H53 H53 H 0 1 N N N 15.635 -7.630 43.403 -5.398 -6.114 -0.805 H53 J81 96 J81 H54 H54 H 0 1 N N N 13.075 -7.945 42.493 -5.427 -7.070 1.483 H54 J81 97 J81 H55 H55 H 0 1 N N N 13.335 -9.570 43.214 -6.920 -6.170 1.840 H55 J81 98 J81 H56 H56 H 0 1 N N N 15.352 -9.893 41.846 -8.081 -7.364 0.003 H56 J81 99 J81 H57 H57 H 0 1 N N N 15.199 -8.231 41.182 -6.588 -8.264 -0.355 H57 J81 100 J81 H58 H58 H 0 1 N N N 14.308 -9.923 39.580 -6.617 -9.221 1.933 H58 J81 101 J81 H59 H59 H 0 1 N N N 13.154 -10.501 40.829 -8.110 -8.320 2.291 H59 J81 102 J81 H60 H60 H 0 1 N N N 13.001 -8.839 40.165 -8.119 -9.606 1.060 H60 J81 103 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J81 C9 C8 SING N N 1 J81 C8 C7 SING N N 2 J81 C7 C6 SING N N 3 J81 C6 C5 SING N N 4 J81 C5 C4 SING N N 5 J81 C4 C3 SING N N 6 J81 C3 C2 SING N N 7 J81 C2 C1 SING N N 8 J81 C1 N2 SING N N 9 J81 N2 C18 SING N N 10 J81 O C18 DOUB N N 11 J81 C18 C19 SING N N 12 J81 C16 C15 SING N N 13 J81 C20 C19 SING N N 14 J81 C20 C21 SING N N 15 J81 C15 C14 SING N N 16 J81 C21 C22 SING N N 17 J81 C14 C13 SING N N 18 J81 O3 C22 SING N N 19 J81 C22 C23 SING N N 20 J81 C13 C12 SING N N 21 J81 O2 C23 SING N N 22 J81 C12 C11 SING N N 23 J81 C23 C24 SING N N 24 J81 C24 N1 SING N N 25 J81 C24 C25 SING N N 26 J81 O1 C17 DOUB N N 27 J81 C17 N1 SING N N 28 J81 C17 C10 SING N N 29 J81 C11 C10 SING N N 30 J81 C25 O5 SING N N 31 J81 O5 C28 SING N N 32 J81 O6 C29 SING N N 33 J81 C28 C29 SING N N 34 J81 C28 O9 SING N N 35 J81 C29 C30 SING N N 36 J81 O9 C27 SING N N 37 J81 C30 C31 SING N N 38 J81 C30 O4 SING N N 39 J81 C27 C31 SING N N 40 J81 C27 C26 SING N N 41 J81 O8 C26 SING N N 42 J81 C31 O7 SING N N 43 J81 C9 H1 SING N N 44 J81 C9 H2 SING N N 45 J81 C9 H3 SING N N 46 J81 C8 H4 SING N N 47 J81 C8 H5 SING N N 48 J81 C7 H6 SING N N 49 J81 C7 H7 SING N N 50 J81 C6 H8 SING N N 51 J81 C6 H9 SING N N 52 J81 C5 H10 SING N N 53 J81 C5 H11 SING N N 54 J81 C4 H12 SING N N 55 J81 C4 H13 SING N N 56 J81 C3 H14 SING N N 57 J81 C3 H15 SING N N 58 J81 C2 H16 SING N N 59 J81 C2 H17 SING N N 60 J81 C1 H18 SING N N 61 J81 C1 H19 SING N N 62 J81 N2 H20 SING N N 63 J81 C19 H21 SING N N 64 J81 C19 H22 SING N N 65 J81 C20 H23 SING N N 66 J81 C20 H24 SING N N 67 J81 C21 H25 SING N N 68 J81 C21 H26 SING N N 69 J81 C22 H27 SING N N 70 J81 O3 H28 SING N N 71 J81 C23 H29 SING N N 72 J81 O2 H30 SING N N 73 J81 C24 H31 SING N N 74 J81 C25 H32 SING N N 75 J81 C25 H33 SING N N 76 J81 C28 H34 SING N N 77 J81 C27 H35 SING N N 78 J81 C26 H36 SING N N 79 J81 C26 H37 SING N N 80 J81 O8 H38 SING N N 81 J81 C31 H39 SING N N 82 J81 O7 H40 SING N N 83 J81 C30 H41 SING N N 84 J81 O4 H42 SING N N 85 J81 C29 H43 SING N N 86 J81 O6 H44 SING N N 87 J81 N1 H45 SING N N 88 J81 C10 H46 SING N N 89 J81 C10 H47 SING N N 90 J81 C11 H48 SING N N 91 J81 C11 H49 SING N N 92 J81 C12 H50 SING N N 93 J81 C12 H51 SING N N 94 J81 C13 H52 SING N N 95 J81 C13 H53 SING N N 96 J81 C14 H54 SING N N 97 J81 C14 H55 SING N N 98 J81 C15 H56 SING N N 99 J81 C15 H57 SING N N 100 J81 C16 H58 SING N N 101 J81 C16 H59 SING N N 102 J81 C16 H60 SING N N 103 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J81 SMILES ACDLabs 12.01 "CCCCCCCCCNC(CCCC(C(C(NC(CCCCCCC)=O)COC1C(C(C(C(O1)CO)O)O)O)O)O)=O" J81 InChI InChI 1.03 "InChI=1S/C31H60N2O10/c1-3-5-7-9-10-12-14-19-32-25(36)18-15-16-23(35)27(38)22(33-26(37)17-13-11-8-6-4-2)21-42-31-30(41)29(40)28(39)24(20-34)43-31/h22-24,27-31,34-35,38-41H,3-21H2,1-2H3,(H,32,36)(H,33,37)/t22-,23+,24+,27-,28-,29-,30+,31-/m0/s1" J81 InChIKey InChI 1.03 QUBHDGTYIZZPAX-IPRPYECBSA-N J81 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCNC(=O)CCC[C@@H](O)[C@@H](O)[C@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC" J81 SMILES CACTVS 3.385 "CCCCCCCCCNC(=O)CCC[CH](O)[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCC" J81 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCNC(=O)CCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCC)O)O" J81 SMILES "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCNC(=O)CCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCC)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J81 "SYSTEMATIC NAME" ACDLabs 12.01 "(5R,6S,7S)-5,6-dihydroxy-N-nonyl-7-(octanoylamino)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide (non-preferred name)" J81 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(5~{R},6~{S},7~{S})-8-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-~{N}-nonyl-7-(octanoylamino)-5,6-bis(oxidanyl)octanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J81 "Create component" 2018-01-17 RCSB J81 "Initial release" 2019-01-30 RCSB #