data_J8D # _chem_comp.id J8D _chem_comp.name "5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-4H-1-benzopyran-4-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms diosmetin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-22 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 300.263 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J8D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6M8D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J8D C01 C1 C 0 1 N N N 3.503 31.515 30.483 -6.507 0.923 0.003 C01 J8D 1 J8D O6 O1 O 0 1 N N N 3.655 30.089 30.360 -5.717 -0.268 0.005 O6 J8D 2 J8D C13 C2 C 0 1 Y N N 3.901 29.567 29.111 -4.368 -0.112 0.006 C13 J8D 3 J8D C12 C3 C 0 1 Y N N 4.420 28.270 29.087 -3.539 -1.234 0.007 C12 J8D 4 J8D C11 C4 C 0 1 Y N N 4.710 27.628 27.888 -2.167 -1.078 0.008 C11 J8D 5 J8D O5 O2 O 0 1 N N N 4.642 27.656 30.279 -4.082 -2.480 0.009 O5 J8D 6 J8D C14 C5 C 0 1 Y N N 3.658 30.216 27.890 -3.817 1.161 -0.001 C14 J8D 7 J8D C15 C6 C 0 1 Y N N 3.947 29.569 26.681 -2.449 1.324 -0.001 C15 J8D 8 J8D C10 C7 C 0 1 Y N N 4.469 28.262 26.661 -1.612 0.206 0.007 C10 J8D 9 J8D C9 C8 C 0 1 N N N 4.780 27.600 25.463 -0.147 0.378 0.008 C9 J8D 10 J8D O4 O3 O 0 1 N N N 5.776 26.659 25.563 0.632 -0.716 0.015 O4 J8D 11 J8D C6 C9 C 0 1 Y N N 6.214 25.958 24.465 1.980 -0.641 0.016 C6 J8D 12 J8D C1 C10 C 0 1 Y N N 7.235 25.022 24.615 2.754 -1.791 0.023 C1 J8D 13 J8D C2 C11 C 0 1 Y N N 7.705 24.314 23.514 4.137 -1.696 0.024 C2 J8D 14 J8D O1 O4 O 0 1 N N N 8.699 23.395 23.639 4.888 -2.827 0.031 O1 J8D 15 J8D C3 C12 C 0 1 Y N N 7.145 24.549 22.268 4.762 -0.454 0.017 C3 J8D 16 J8D C4 C13 C 0 1 Y N N 6.130 25.481 22.127 4.007 0.704 0.011 C4 J8D 17 J8D O2 O5 O 0 1 N N N 5.595 25.705 20.905 4.615 1.917 0.004 O2 J8D 18 J8D C5 C14 C 0 1 Y N N 5.631 26.204 23.220 2.609 0.615 0.009 C5 J8D 19 J8D C7 C15 C 0 1 N N N 4.599 27.156 23.106 1.766 1.823 0.002 C7 J8D 20 J8D O3 O6 O 0 1 N N N 4.013 27.351 22.042 2.259 2.940 -0.003 O3 J8D 21 J8D C8 C16 C 0 1 N N N 4.167 27.848 24.232 0.363 1.639 -0.005 C8 J8D 22 J8D H1 H1 H 0 1 N N N 3.313 31.775 31.535 -7.564 0.658 0.003 H1 J8D 23 J8D H2 H2 H 0 1 N N N 4.424 32.012 30.144 -6.280 1.511 0.892 H2 J8D 24 J8D H3 H3 H 0 1 N N N 2.657 31.848 29.864 -6.279 1.509 -0.888 H3 J8D 25 J8D H4 H4 H 0 1 N N N 5.125 26.631 27.902 -1.523 -1.945 0.010 H4 J8D 26 J8D H5 H5 H 0 1 N N N 4.389 28.237 30.987 -4.238 -2.842 -0.874 H5 J8D 27 J8D H6 H6 H 0 1 N N N 3.248 31.215 27.882 -4.463 2.027 -0.008 H6 J8D 28 J8D H7 H7 H 0 1 N N N 3.766 30.082 25.748 -2.023 2.317 -0.007 H7 J8D 29 J8D H8 H8 H 0 1 N N N 7.663 24.845 25.591 2.280 -2.761 0.029 H8 J8D 30 J8D H9 H9 H 0 1 N N N 8.976 23.349 24.547 5.107 -3.159 -0.851 H9 J8D 31 J8D H10 H10 H 0 1 N N N 7.501 24.005 21.406 5.841 -0.394 0.018 H10 J8D 32 J8D H11 H11 H 0 1 N N N 4.895 26.344 20.977 4.792 2.264 -0.881 H11 J8D 33 J8D H12 H12 H 0 1 N N N 3.367 28.569 24.156 -0.298 2.493 -0.011 H12 J8D 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J8D O2 C4 SING N N 1 J8D O3 C7 DOUB N N 2 J8D C4 C3 DOUB Y N 3 J8D C4 C5 SING Y N 4 J8D C3 C2 SING Y N 5 J8D C7 C5 SING N N 6 J8D C7 C8 SING N N 7 J8D C5 C6 DOUB Y N 8 J8D C2 O1 SING N N 9 J8D C2 C1 DOUB Y N 10 J8D C8 C9 DOUB N N 11 J8D C6 C1 SING Y N 12 J8D C6 O4 SING N N 13 J8D C9 O4 SING N N 14 J8D C9 C10 SING N N 15 J8D C10 C15 DOUB Y N 16 J8D C10 C11 SING Y N 17 J8D C15 C14 SING Y N 18 J8D C11 C12 DOUB Y N 19 J8D C14 C13 DOUB Y N 20 J8D C12 C13 SING Y N 21 J8D C12 O5 SING N N 22 J8D C13 O6 SING N N 23 J8D O6 C01 SING N N 24 J8D C01 H1 SING N N 25 J8D C01 H2 SING N N 26 J8D C01 H3 SING N N 27 J8D C11 H4 SING N N 28 J8D O5 H5 SING N N 29 J8D C14 H6 SING N N 30 J8D C15 H7 SING N N 31 J8D C1 H8 SING N N 32 J8D O1 H9 SING N N 33 J8D C3 H10 SING N N 34 J8D O2 H11 SING N N 35 J8D C8 H12 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J8D SMILES ACDLabs 12.01 "COc1c(O)cc(cc1)C=3Oc2cc(O)cc(c2C(C=3)=O)O" J8D InChI InChI 1.03 "InChI=1S/C16H12O6/c1-21-13-3-2-8(4-10(13)18)14-7-12(20)16-11(19)5-9(17)6-15(16)22-14/h2-7,17-19H,1H3" J8D InChIKey InChI 1.03 MBNGWHIJMBWFHU-UHFFFAOYSA-N J8D SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1O)C2=CC(=O)c3c(O)cc(O)cc3O2" J8D SMILES CACTVS 3.385 "COc1ccc(cc1O)C2=CC(=O)c3c(O)cc(O)cc3O2" J8D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1ccc(cc1O)C2=CC(=O)c3c(cc(cc3O2)O)O" J8D SMILES "OpenEye OEToolkits" 2.0.6 "COc1ccc(cc1O)C2=CC(=O)c3c(cc(cc3O2)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J8D "SYSTEMATIC NAME" ACDLabs 12.01 "5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-4H-1-benzopyran-4-one" J8D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-(4-methoxy-3-oxidanyl-phenyl)-5,7-bis(oxidanyl)chromen-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J8D "Create component" 2018-08-22 RCSB J8D "Modify synonyms" 2018-08-22 RCSB J8D "Initial release" 2019-01-23 RCSB J8D "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id J8D _pdbx_chem_comp_synonyms.name diosmetin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##