data_J8J # _chem_comp.id J8J _chem_comp.name "5-[(5-cyclopropyl-2-oxo-1,2-dihydropyridine-3-carbonyl)amino]-N-(oxetan-3-yl)-2-phenyl-1H-benzimidazole-6-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H23 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-01 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.492 _chem_comp.one_letter_code ? _chem_comp.three_letter_code J8J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SH7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal J8J C4 C1 C 0 1 Y N N 25.908 50.081 -11.653 -0.769 0.919 0.493 C4 J8J 1 J8J C5 C2 C 0 1 Y N N 26.263 50.879 -10.565 -2.152 0.810 0.303 C5 J8J 2 J8J C6 C3 C 0 1 Y N N 27.610 51.057 -10.243 -2.725 -0.452 0.049 C6 J8J 3 J8J C8 C4 C 0 1 Y N N 26.339 52.175 -8.834 -4.296 1.106 0.076 C8 J8J 4 J8J C10 C5 C 0 1 Y N N 25.956 52.994 -7.680 -5.613 1.775 0.007 C10 J8J 5 J8J C13 C6 C 0 1 Y N N 26.530 54.540 -5.920 -7.991 1.659 -0.304 C13 J8J 6 J8J C15 C7 C 0 1 Y N N 26.892 53.800 -7.033 -6.766 1.029 -0.241 C15 J8J 7 J8J C20 C8 C 0 1 N N N 32.041 47.234 -12.947 -0.093 -6.372 0.339 C20 J8J 8 J8J C22 C9 C 0 1 N N N 30.919 45.502 -12.919 0.563 -5.800 -1.459 C22 J8J 9 J8J C24 C10 C 0 1 N N N 25.244 48.405 -14.035 2.059 0.988 0.143 C24 J8J 10 J8J C1 C11 C 0 1 Y N N 26.906 49.474 -12.424 0.025 -0.207 0.426 C1 J8J 11 J8J C11 C12 C 0 1 Y N N 24.671 52.908 -7.161 -5.709 3.155 0.194 C11 J8J 12 J8J C12 C13 C 0 1 Y N N 25.248 54.457 -5.421 -8.079 3.028 -0.123 C12 J8J 13 J8J C14 C14 C 0 1 Y N N 24.317 53.646 -6.045 -6.941 3.773 0.128 C14 J8J 14 J8J C16 C15 C 0 1 N N N 29.405 49.016 -12.827 0.304 -2.664 0.096 C16 J8J 15 J8J C19 C16 C 0 1 N N N 30.567 46.945 -13.443 0.593 -5.075 -0.107 C19 J8J 16 J8J C2 C17 C 0 1 Y N N 28.278 49.662 -12.070 -0.549 -1.465 0.166 C2 J8J 17 J8J C25 C18 C 0 1 N N N 25.109 47.142 -14.852 3.525 1.054 0.230 C25 J8J 18 J8J C27 C19 C 0 1 N N N 25.991 45.982 -14.675 4.255 0.037 0.898 C27 J8J 19 J8J C29 C20 C 0 1 N N N 24.677 44.860 -16.413 6.269 1.148 0.409 C29 J8J 20 J8J C3 C21 C 0 1 Y N N 28.613 50.464 -10.984 -1.929 -1.580 -0.014 C3 J8J 21 J8J C30 C22 C 0 1 N N N 23.848 45.910 -16.582 5.613 2.141 -0.245 C30 J8J 22 J8J C31 C23 C 0 1 N N N 24.078 47.075 -15.754 4.223 2.112 -0.348 C31 J8J 23 J8J C32 C24 C 0 1 N N N 22.755 45.815 -17.569 6.390 3.276 -0.862 C32 J8J 24 J8J C34 C25 C 0 1 N N N 21.855 46.964 -17.927 5.623 4.253 -1.755 C34 J8J 25 J8J C35 C26 C 0 1 N N N 22.898 46.536 -18.879 6.088 4.691 -0.364 C35 J8J 26 J8J N17 N1 N 0 1 N N N 29.459 47.676 -12.824 -0.256 -3.883 -0.037 N17 J8J 27 J8J N23 N2 N 0 1 N N N 26.513 48.635 -13.509 1.404 -0.096 0.605 N23 J8J 28 J8J N28 N3 N 0 1 N N N 25.697 44.891 -15.513 5.598 0.113 0.968 N28 J8J 29 J8J N7 N4 N 0 1 Y N N 27.629 51.876 -9.130 -4.086 -0.234 -0.091 N7 J8J 30 J8J N9 N5 N 0 1 Y N N 25.475 51.584 -9.659 -3.155 1.710 0.307 N9 J8J 31 J8J O18 O1 O 0 1 N N N 30.312 49.701 -13.299 1.513 -2.554 0.158 O18 J8J 32 J8J O21 O2 O 0 1 N N N 32.335 45.814 -13.014 -0.583 -6.528 -0.999 O21 J8J 33 J8J O26 O3 O 0 1 N N N 24.269 49.154 -13.885 1.436 1.912 -0.346 O26 J8J 34 J8J O33 O4 O 0 1 N N N 26.951 45.905 -13.891 3.669 -0.902 1.408 O33 J8J 35 J8J H37 H1 H 0 1 N N N 24.867 49.932 -11.899 -0.325 1.884 0.688 H37 J8J 36 J8J H41 H2 H 0 1 N N N 27.254 55.184 -5.442 -8.884 1.083 -0.496 H41 J8J 37 J8J H43 H3 H 0 1 N N N 27.906 53.847 -7.402 -6.699 -0.040 -0.383 H43 J8J 38 J8J H46 H4 H 0 1 N N N 32.636 47.850 -13.638 0.609 -7.152 0.637 H46 J8J 39 J8J H47 H5 H 0 1 N N N 32.100 47.659 -11.934 -0.882 -6.215 1.074 H47 J8J 40 J8J H49 H6 H 0 1 N N N 30.572 45.299 -11.895 0.348 -5.140 -2.299 H49 J8J 41 J8J H48 H7 H 0 1 N N N 30.592 44.690 -13.585 1.436 -6.429 -1.631 H48 J8J 42 J8J H39 H8 H 0 1 N N N 23.944 52.262 -7.631 -4.821 3.737 0.391 H39 J8J 43 J8J H40 H9 H 0 1 N N N 24.971 55.024 -4.545 -9.041 3.516 -0.173 H40 J8J 44 J8J H42 H10 H 0 1 N N N 23.310 53.589 -5.660 -7.016 4.840 0.273 H42 J8J 45 J8J H45 H11 H 0 1 N N N 30.517 46.960 -14.542 1.590 -4.924 0.305 H45 J8J 46 J8J H52 H12 H 0 1 N N N 24.527 43.971 -17.008 7.346 1.183 0.482 H52 J8J 47 J8J H36 H13 H 0 1 N N N 29.649 50.622 -10.723 -2.371 -2.545 -0.213 H36 J8J 48 J8J H53 H14 H 0 1 N N N 23.414 47.921 -15.850 3.695 2.899 -0.868 H53 J8J 49 J8J H54 H15 H 0 1 N N N 22.281 44.825 -17.643 7.421 3.048 -1.133 H54 J8J 50 J8J H56 H16 H 0 1 N N N 20.795 46.780 -18.156 6.150 4.668 -2.615 H56 J8J 51 J8J H55 H17 H 0 1 N N N 21.955 47.924 -17.399 4.557 4.076 -1.897 H55 J8J 52 J8J H57 H18 H 0 1 N N N 23.773 47.178 -19.059 5.327 4.801 0.409 H57 J8J 53 J8J H58 H19 H 0 1 N N N 22.613 46.034 -19.815 6.919 5.393 -0.309 H58 J8J 54 J8J H44 H20 H 0 1 N N N 28.722 47.161 -12.387 -1.221 -3.971 -0.087 H44 J8J 55 J8J H50 H21 H 0 1 N N N 27.257 48.140 -13.957 1.892 -0.799 1.062 H50 J8J 56 J8J H51 H22 H 0 1 N N N 26.279 44.081 -15.442 6.092 -0.584 1.427 H51 J8J 57 J8J H38 H23 H 0 1 N N N 28.440 52.189 -8.636 -4.762 -0.906 -0.273 H38 J8J 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal J8J C1 C2 DOUB Y N 1 J8J C1 C4 SING Y N 2 J8J C1 N23 SING N N 3 J8J C2 C3 SING Y N 4 J8J C2 C16 SING N N 5 J8J C3 C6 DOUB Y N 6 J8J C4 C5 DOUB Y N 7 J8J C5 C6 SING Y N 8 J8J C5 N9 SING Y N 9 J8J C6 N7 SING Y N 10 J8J N7 C8 SING Y N 11 J8J C8 N9 DOUB Y N 12 J8J C8 C10 SING N N 13 J8J C10 C11 DOUB Y N 14 J8J C10 C15 SING Y N 15 J8J C11 C14 SING Y N 16 J8J C12 C13 SING Y N 17 J8J C12 C14 DOUB Y N 18 J8J C13 C15 DOUB Y N 19 J8J C16 N17 SING N N 20 J8J C16 O18 DOUB N N 21 J8J N17 C19 SING N N 22 J8J C19 C20 SING N N 23 J8J C19 C22 SING N N 24 J8J C20 O21 SING N N 25 J8J O21 C22 SING N N 26 J8J N23 C24 SING N N 27 J8J C24 C25 SING N N 28 J8J C24 O26 DOUB N N 29 J8J C25 C27 SING N N 30 J8J C25 C31 DOUB N N 31 J8J C27 N28 SING N N 32 J8J C27 O33 DOUB N N 33 J8J N28 C29 SING N N 34 J8J C29 C30 DOUB N N 35 J8J C30 C31 SING N N 36 J8J C30 C32 SING N N 37 J8J C32 C35 SING N N 38 J8J C32 C34 SING N N 39 J8J C34 C35 SING N N 40 J8J C4 H37 SING N N 41 J8J C13 H41 SING N N 42 J8J C15 H43 SING N N 43 J8J C20 H46 SING N N 44 J8J C20 H47 SING N N 45 J8J C22 H49 SING N N 46 J8J C22 H48 SING N N 47 J8J C11 H39 SING N N 48 J8J C12 H40 SING N N 49 J8J C14 H42 SING N N 50 J8J C19 H45 SING N N 51 J8J C29 H52 SING N N 52 J8J C3 H36 SING N N 53 J8J C31 H53 SING N N 54 J8J C32 H54 SING N N 55 J8J C34 H56 SING N N 56 J8J C34 H55 SING N N 57 J8J C35 H57 SING N N 58 J8J C35 H58 SING N N 59 J8J N17 H44 SING N N 60 J8J N23 H50 SING N N 61 J8J N28 H51 SING N N 62 J8J N7 H38 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor J8J SMILES ACDLabs 12.01 "O=C(NC1COC1)c1cc2[NH]c(nc2cc1NC(=O)C1=CC(=CNC1=O)C1CC1)c1ccccc1" J8J InChI InChI 1.03 "InChI=1S/C26H23N5O4/c32-24-19(8-16(11-27-24)14-6-7-14)26(34)31-20-10-22-21(9-18(20)25(33)28-17-12-35-13-17)29-23(30-22)15-4-2-1-3-5-15/h1-5,8-11,14,17H,6-7,12-13H2,(H,27,32)(H,28,33)(H,29,30)(H,31,34)" J8J InChIKey InChI 1.03 BOUOGGRIGQQZCD-UHFFFAOYSA-N J8J SMILES_CANONICAL CACTVS 3.385 "O=C1NC=C(C=C1C(=O)Nc2cc3nc([nH]c3cc2C(=O)NC4COC4)c5ccccc5)C6CC6" J8J SMILES CACTVS 3.385 "O=C1NC=C(C=C1C(=O)Nc2cc3nc([nH]c3cc2C(=O)NC4COC4)c5ccccc5)C6CC6" J8J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2[nH]c3cc(c(cc3n2)NC(=O)C4=CC(=CNC4=O)C5CC5)C(=O)NC6COC6" J8J SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2[nH]c3cc(c(cc3n2)NC(=O)C4=CC(=CNC4=O)C5CC5)C(=O)NC6COC6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier J8J "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(5-cyclopropyl-2-oxo-1,2-dihydropyridine-3-carbonyl)amino]-N-(oxetan-3-yl)-2-phenyl-1H-benzimidazole-6-carboxamide" J8J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[(5-cyclopropyl-2-oxidanylidene-1~{H}-pyridin-3-yl)carbonylamino]-~{N}-(oxetan-3-yl)-2-phenyl-3~{H}-benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site J8J "Create component" 2022-02-01 RCSB J8J "Initial release" 2022-10-12 RCSB #