data_JA9 # _chem_comp.id JA9 _chem_comp.name "6-[2,3-bis(chloranyl)phenoxy]-5-chloranyl-2-methylsulfanyl-1H-benzimidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H9 Cl3 N2 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Triclabendazole _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-07 _chem_comp.pdbx_modified_date 2021-11-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 359.658 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JA9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ERI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JA9 CAA C1 C 0 1 Y N N -21.760 -1.374 -8.044 1.465 -0.869 1.088 CAA JA9 1 JA9 CAB C2 C 0 1 Y N N -22.036 -0.049 -8.357 1.948 -0.252 -0.057 CAB JA9 2 JA9 CAC C3 C 0 1 Y N N -21.331 -2.245 -9.036 2.341 -1.487 1.960 CAC JA9 3 JA9 CAD C4 C 0 1 Y N N -21.900 0.436 -9.665 3.309 -0.261 -0.327 CAD JA9 4 JA9 CAE C5 C 0 1 Y N N -21.190 -1.779 -10.339 3.697 -1.496 1.690 CAE JA9 5 JA9 CAF C6 C 0 1 Y N N -21.465 -0.449 -10.657 4.181 -0.886 0.547 CAF JA9 6 JA9 CAH C7 C 0 1 Y N N -21.926 0.689 -6.137 -0.221 0.441 -0.556 CAH JA9 7 JA9 CAI C8 C 0 1 Y N N -20.654 1.184 -5.946 -0.659 1.497 0.238 CAI JA9 8 JA9 CAJ C9 C 0 1 Y N N -22.585 0.144 -5.042 -1.113 -0.526 -0.987 CAJ JA9 9 JA9 CAK C10 C 0 1 Y N N -20.074 1.097 -4.693 -1.984 1.592 0.603 CAK JA9 10 JA9 CAL C11 C 0 1 Y N N -21.981 0.079 -3.850 -2.449 -0.441 -0.626 CAL JA9 11 JA9 CAM C12 C 0 1 Y N N -20.741 0.548 -3.686 -2.895 0.623 0.175 CAM JA9 12 JA9 CAO C13 C 0 1 Y N N -21.393 -0.224 -1.804 -4.626 -0.633 -0.257 CAO JA9 13 JA9 CAT C14 C 0 1 N N N -20.425 -2.179 -0.089 -7.091 0.019 0.736 CAT JA9 14 JA9 NAN N1 N 0 1 Y N N -20.380 0.357 -2.422 -4.230 0.450 0.365 NAN JA9 15 JA9 NAP N2 N 0 1 Y N N -22.389 -0.403 -2.671 -3.564 -1.222 -0.886 NAP JA9 16 JA9 OAG O1 O 0 1 N N N -22.464 0.825 -7.396 1.088 0.361 -0.914 OAG JA9 17 JA9 SAS S1 S 0 1 N N N -21.387 -0.680 -0.058 -6.280 -1.242 -0.278 SAS JA9 18 JA9 CLQ CL1 CL 0 0 N N N -19.828 1.854 -7.188 0.471 2.702 0.771 CLQ JA9 19 JA9 CLR CL2 CL 0 0 N N N -21.254 0.033 -12.317 5.885 -0.899 0.211 CLR JA9 20 JA9 CLU CL3 CL 0 0 N N N -22.270 2.183 -10.070 3.917 0.510 -1.759 CLU JA9 21 JA9 H1 H1 H 0 1 N N N -21.879 -1.726 -7.030 0.407 -0.863 1.300 H1 JA9 22 JA9 H2 H2 H 0 1 N N N -21.109 -3.275 -8.798 1.966 -1.963 2.853 H2 JA9 23 JA9 H3 H3 H 0 1 N N N -20.863 -2.456 -11.115 4.379 -1.979 2.374 H3 JA9 24 JA9 H4 H4 H 0 1 N N N -23.592 -0.230 -5.154 -0.770 -1.344 -1.603 H4 JA9 25 JA9 H5 H5 H 0 1 N N N -19.076 1.477 -4.534 -2.318 2.414 1.220 H5 JA9 26 JA9 H6 H6 H 0 1 N N N -20.336 -2.579 0.932 -6.972 0.995 0.266 H6 JA9 27 JA9 H7 H7 H 0 1 N N N -20.922 -2.920 -0.732 -8.152 -0.214 0.825 H7 JA9 28 JA9 H8 H8 H 0 1 N N N -19.422 -1.963 -0.487 -6.638 0.035 1.727 H8 JA9 29 JA9 H10 H10 H 0 1 N N N -23.277 -0.820 -2.476 -3.587 -2.034 -1.414 H10 JA9 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JA9 CLR CAF SING N N 1 JA9 CAF CAE DOUB Y N 2 JA9 CAF CAD SING Y N 3 JA9 CAE CAC SING Y N 4 JA9 CLU CAD SING N N 5 JA9 CAD CAB DOUB Y N 6 JA9 CAC CAA DOUB Y N 7 JA9 CAB CAA SING Y N 8 JA9 CAB OAG SING N N 9 JA9 OAG CAH SING N N 10 JA9 CLQ CAI SING N N 11 JA9 CAH CAI SING Y N 12 JA9 CAH CAJ DOUB Y N 13 JA9 CAI CAK DOUB Y N 14 JA9 CAJ CAL SING Y N 15 JA9 CAK CAM SING Y N 16 JA9 CAL CAM DOUB Y N 17 JA9 CAL NAP SING Y N 18 JA9 CAM NAN SING Y N 19 JA9 NAP CAO SING Y N 20 JA9 NAN CAO DOUB Y N 21 JA9 CAO SAS SING N N 22 JA9 CAT SAS SING N N 23 JA9 CAA H1 SING N N 24 JA9 CAC H2 SING N N 25 JA9 CAE H3 SING N N 26 JA9 CAJ H4 SING N N 27 JA9 CAK H5 SING N N 28 JA9 CAT H6 SING N N 29 JA9 CAT H7 SING N N 30 JA9 CAT H8 SING N N 31 JA9 NAP H10 SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JA9 InChI InChI 1.03 "InChI=1S/C14H9Cl3N2OS/c1-21-14-18-9-5-8(16)12(6-10(9)19-14)20-11-4-2-3-7(15)13(11)17/h2-6H,1H3,(H,18,19)" JA9 InChIKey InChI 1.03 NQPDXQQQCQDHHW-UHFFFAOYSA-N JA9 SMILES_CANONICAL CACTVS 3.385 "CSc1[nH]c2cc(Oc3cccc(Cl)c3Cl)c(Cl)cc2n1" JA9 SMILES CACTVS 3.385 "CSc1[nH]c2cc(Oc3cccc(Cl)c3Cl)c(Cl)cc2n1" JA9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSc1[nH]c2cc(c(cc2n1)Cl)Oc3cccc(c3Cl)Cl" JA9 SMILES "OpenEye OEToolkits" 2.0.7 "CSc1[nH]c2cc(c(cc2n1)Cl)Oc3cccc(c3Cl)Cl" # _pdbx_chem_comp_identifier.comp_id JA9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[2,3-bis(chloranyl)phenoxy]-5-chloranyl-2-methylsulfanyl-1~{H}-benzimidazole" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JA9 _pdbx_chem_comp_synonyms.name Triclabendazole _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JA9 "Create component" 2021-05-07 PDBJ JA9 "Initial release" 2021-11-24 RCSB ##