data_JC3 # _chem_comp.id JC3 _chem_comp.name "3-methyl-2-[[(3R,5R)-1-methyl-5-phenyl-piperidin-3-yl]amino]-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H26 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-14 _chem_comp.pdbx_modified_date 2021-10-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 338.447 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JC3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DN4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JC3 C13 C1 C 0 1 N N N 51.124 -26.045 -14.023 5.573 1.575 1.650 C13 JC3 1 JC3 C15 C2 C 0 1 N N N 52.640 -27.950 -13.931 4.496 -0.137 0.312 C15 JC3 2 JC3 C20 C3 C 0 1 Y N N 54.873 -30.083 -5.948 -4.198 -0.071 0.507 C20 JC3 3 JC3 C21 C4 C 0 1 Y N N 55.442 -31.336 -5.810 -4.900 0.077 1.688 C21 JC3 4 JC3 C22 C5 C 0 1 Y N N 56.439 -31.522 -4.890 -6.140 -0.517 1.834 C22 JC3 5 JC3 C24 C6 C 0 1 Y N N 56.311 -29.195 -4.252 -5.975 -1.406 -0.383 C24 JC3 6 JC3 C1 C7 C 0 1 N N N 50.468 -31.105 -7.031 -1.580 3.214 -2.016 C01 JC3 7 JC3 C3 C8 C 0 1 N N N 52.364 -30.306 -6.429 -2.876 1.553 -0.823 C03 JC3 8 JC3 C4 C9 C 0 1 N N R 53.729 -29.860 -7.016 -2.843 0.571 0.350 C04 JC3 9 JC3 C5 C10 C 0 1 N N N 54.016 -30.548 -8.243 -1.794 -0.510 0.075 C05 JC3 10 JC3 C6 C11 C 0 1 N N R 53.033 -30.086 -9.205 -0.432 0.156 -0.142 C06 JC3 11 JC3 C7 C12 C 0 1 N N N 51.561 -30.398 -8.805 -0.535 1.151 -1.301 C07 JC3 12 JC3 C9 C13 C 0 1 N N N 53.203 -29.719 -11.666 1.891 -0.633 -0.207 C09 JC3 13 JC3 C11 C14 C 0 1 N N N 52.212 -27.581 -12.541 3.534 0.787 0.595 C11 JC3 14 JC3 C12 C15 C 0 1 N N N 51.532 -26.273 -12.556 4.166 2.023 1.198 C12 JC3 15 JC3 C14 C16 C 0 1 N N N 52.196 -26.863 -14.817 5.858 0.392 0.700 C14 JC3 16 JC3 C16 C17 C 0 1 N N N 53.354 -29.238 -14.215 4.116 -1.366 -0.259 C16 JC3 17 JC3 C19 C18 C 0 1 N N N 54.302 -31.363 -13.150 2.381 -2.860 -1.104 C19 JC3 18 JC3 C23 C19 C 0 1 Y N N 56.866 -30.456 -4.122 -6.677 -1.259 0.798 C23 JC3 19 JC3 C25 C20 C 0 1 Y N N 55.300 -29.004 -5.167 -4.734 -0.813 -0.529 C25 JC3 20 JC3 N2 N1 N 0 1 N N N 51.283 -30.290 -7.387 -1.551 2.164 -0.989 N02 JC3 21 JC3 N8 N2 N 0 1 N N N 53.473 -30.604 -10.526 0.567 -0.866 -0.462 N08 JC3 22 JC3 N10 N3 N 0 1 N N N 52.485 -28.440 -11.440 2.255 0.514 0.327 N10 JC3 23 JC3 N18 N4 N 0 1 N N N 53.619 -30.094 -13.035 2.809 -1.591 -0.510 N18 JC3 24 JC3 O17 O1 O 0 1 N N N 53.672 -29.546 -15.356 4.954 -2.213 -0.524 O17 JC3 25 JC3 H131 H1 H 0 0 N N N 51.168 -24.977 -14.284 6.300 2.374 1.504 H131 JC3 26 JC3 H132 H2 H 0 0 N N N 50.111 -26.428 -14.216 5.561 1.248 2.690 H132 JC3 27 JC3 H211 H4 H 0 0 N N N 55.103 -32.159 -6.422 -4.481 0.656 2.497 H211 JC3 28 JC3 H221 H5 H 0 0 N N N 56.889 -32.496 -4.766 -6.689 -0.402 2.757 H221 JC3 29 JC3 H241 H6 H 0 0 N N N 56.665 -28.374 -3.646 -6.394 -1.986 -1.192 H241 JC3 30 JC3 H012 H7 H 0 0 N N N 50.283 -30.993 -5.952 -1.884 2.781 -2.969 H012 JC3 31 JC3 H013 H8 H 0 0 N N N 49.529 -30.949 -7.582 -2.292 3.987 -1.725 H013 JC3 32 JC3 H011 H9 H 0 0 N N N 50.849 -32.117 -7.234 -0.587 3.652 -2.116 H011 JC3 33 JC3 H031 H10 H 0 0 N N N 52.104 -29.629 -5.602 -3.148 1.021 -1.735 H031 JC3 34 JC3 H032 H11 H 0 0 N N N 52.471 -31.331 -6.044 -3.612 2.332 -0.624 H032 JC3 35 JC3 H041 H12 H 0 0 N N N 53.671 -28.779 -7.213 -2.586 1.105 1.265 H041 JC3 36 JC3 H051 H13 H 0 0 N N N 53.928 -31.635 -8.100 -1.736 -1.187 0.927 H051 JC3 37 JC3 H052 H14 H 0 0 N N N 55.032 -30.304 -8.588 -2.073 -1.070 -0.817 H052 JC3 38 JC3 H061 H15 H 0 0 N N N 53.110 -28.990 -9.250 -0.136 0.683 0.765 H061 JC3 39 JC3 H071 H16 H 0 0 N N N 50.905 -29.694 -9.337 0.429 1.637 -1.449 H071 JC3 40 JC3 H072 H17 H 0 0 N N N 51.330 -31.426 -9.122 -0.818 0.621 -2.210 H072 JC3 41 JC3 H121 H19 H 0 0 N N N 52.215 -25.480 -12.218 3.585 2.366 2.054 H121 JC3 42 JC3 H122 H20 H 0 0 N N N 50.644 -26.293 -11.908 4.243 2.812 0.450 H122 JC3 43 JC3 H142 H21 H 0 0 N N N 51.753 -27.279 -15.734 6.396 0.737 -0.184 H142 JC3 44 JC3 H141 H22 H 0 0 N N N 53.047 -26.217 -15.081 6.431 -0.379 1.215 H141 JC3 45 JC3 H193 H23 H 0 0 N N N 54.389 -31.825 -12.155 3.251 -3.494 -1.273 H193 JC3 46 JC3 H191 H24 H 0 0 N N N 53.730 -32.028 -13.814 1.690 -3.363 -0.427 H191 JC3 47 JC3 H192 H25 H 0 0 N N N 55.306 -31.202 -13.569 1.882 -2.666 -2.054 H192 JC3 48 JC3 H231 H26 H 0 0 N N N 57.654 -30.611 -3.400 -7.645 -1.724 0.912 H231 JC3 49 JC3 H251 H27 H 0 0 N N N 54.842 -28.032 -5.280 -4.185 -0.929 -1.452 H251 JC3 50 JC3 H081 H29 H 0 0 N N N 53.921 -31.492 -10.631 0.290 -1.709 -0.856 H081 JC3 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JC3 O17 C16 DOUB N N 1 JC3 C14 C13 SING N N 2 JC3 C14 C15 SING N N 3 JC3 C16 C15 SING N N 4 JC3 C16 N18 SING N N 5 JC3 C13 C12 SING N N 6 JC3 C15 C11 DOUB N N 7 JC3 C19 N18 SING N N 8 JC3 N18 C9 SING N N 9 JC3 C12 C11 SING N N 10 JC3 C11 N10 SING N N 11 JC3 C9 N10 DOUB N N 12 JC3 C9 N8 SING N N 13 JC3 N8 C6 SING N N 14 JC3 C6 C7 SING N N 15 JC3 C6 C5 SING N N 16 JC3 C7 N2 SING N N 17 JC3 C5 C4 SING N N 18 JC3 N2 C1 SING N N 19 JC3 N2 C3 SING N N 20 JC3 C4 C3 SING N N 21 JC3 C4 C20 SING N N 22 JC3 C20 C21 DOUB Y N 23 JC3 C20 C25 SING Y N 24 JC3 C21 C22 SING Y N 25 JC3 C25 C24 DOUB Y N 26 JC3 C22 C23 DOUB Y N 27 JC3 C24 C23 SING Y N 28 JC3 C13 H131 SING N N 29 JC3 C13 H132 SING N N 30 JC3 C21 H211 SING N N 31 JC3 C22 H221 SING N N 32 JC3 C24 H241 SING N N 33 JC3 C1 H012 SING N N 34 JC3 C1 H013 SING N N 35 JC3 C1 H011 SING N N 36 JC3 C3 H031 SING N N 37 JC3 C3 H032 SING N N 38 JC3 C4 H041 SING N N 39 JC3 C5 H051 SING N N 40 JC3 C5 H052 SING N N 41 JC3 C6 H061 SING N N 42 JC3 C7 H071 SING N N 43 JC3 C7 H072 SING N N 44 JC3 C12 H121 SING N N 45 JC3 C12 H122 SING N N 46 JC3 C14 H142 SING N N 47 JC3 C14 H141 SING N N 48 JC3 C19 H193 SING N N 49 JC3 C19 H191 SING N N 50 JC3 C19 H192 SING N N 51 JC3 C23 H231 SING N N 52 JC3 C25 H251 SING N N 53 JC3 N8 H081 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JC3 InChI InChI 1.03 "InChI=1S/C20H26N4O/c1-23-12-15(14-7-4-3-5-8-14)11-16(13-23)21-20-22-18-10-6-9-17(18)19(25)24(20)2/h3-5,7-8,15-16H,6,9-13H2,1-2H3,(H,21,22)/t15-,16+/m0/s1" JC3 InChIKey InChI 1.03 PUACXQJMNIDQMB-JKSUJKDBSA-N JC3 SMILES_CANONICAL CACTVS 3.385 "CN1C[C@@H](C[C@@H](C1)c2ccccc2)NC3=NC4=C(CCC4)C(=O)N3C" JC3 SMILES CACTVS 3.385 "CN1C[CH](C[CH](C1)c2ccccc2)NC3=NC4=C(CCC4)C(=O)N3C" JC3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C[C@H](C[C@H](C1)NC2=NC3=C(CCC3)C(=O)N2C)c4ccccc4" JC3 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CC(CC(C1)NC2=NC3=C(CCC3)C(=O)N2C)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id JC3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-methyl-2-[[(3~{R},5~{R})-1-methyl-5-phenyl-piperidin-3-yl]amino]-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JC3 "Create component" 2021-05-14 PDBJ JC3 "Initial release" 2021-10-20 RCSB ##