data_JC4 # _chem_comp.id JC4 _chem_comp.name "2'-(beta-D-galactopyranosyloxy)-5-nitro[1,1'-biphenyl]-3-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 N O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-29 _chem_comp.pdbx_modified_date 2019-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.355 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JC4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6MAP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JC4 C10 C1 C 0 1 Y N N 29.329 7.796 -30.120 -0.367 4.286 -0.497 C10 JC4 1 JC4 C13 C2 C 0 1 Y N N 29.142 6.696 -26.503 -1.996 0.906 -0.260 C13 JC4 2 JC4 C15 C3 C 0 1 Y N N 29.591 6.292 -24.162 -4.175 0.062 0.324 C15 JC4 3 JC4 C20 C4 C 0 1 Y N N 27.478 7.171 -24.825 -2.683 -1.276 -1.008 C20 JC4 4 JC4 C24 C5 C 0 1 Y N N 27.876 7.150 -26.160 -1.732 -0.275 -0.954 C24 JC4 5 JC4 O01 O1 O 0 1 N N N 28.642 0.885 -29.146 4.933 1.980 -1.613 O01 JC4 6 JC4 C02 C6 C 0 1 N N N 29.838 0.823 -29.960 5.088 0.594 -1.300 C02 JC4 7 JC4 C03 C7 C 0 1 N N R 30.984 1.548 -29.308 4.289 0.264 -0.038 C03 JC4 8 JC4 O04 O2 O 0 1 N N N 30.478 2.843 -28.818 2.894 0.439 -0.298 O04 JC4 9 JC4 C05 C8 C 0 1 N N S 31.535 3.699 -28.305 2.054 0.180 0.829 C05 JC4 10 JC4 O06 O3 O 0 1 N N N 30.921 4.755 -27.693 0.690 0.409 0.469 O06 JC4 11 JC4 C07 C9 C 0 1 Y N N 30.391 5.765 -28.543 0.342 1.683 0.152 C07 JC4 12 JC4 C08 C10 C 0 1 Y N N 30.716 5.835 -29.905 1.289 2.694 0.195 C08 JC4 13 JC4 C09 C11 C 0 1 Y N N 30.181 6.847 -30.693 0.934 3.989 -0.133 C09 JC4 14 JC4 C11 C12 C 0 1 Y N N 29.009 7.726 -28.770 -1.323 3.290 -0.534 C11 JC4 15 JC4 C12 C13 C 0 1 Y N N 29.537 6.712 -27.975 -0.975 1.981 -0.210 C12 JC4 16 JC4 C14 C14 C 0 1 Y N N 30.004 6.278 -25.505 -3.219 1.076 0.380 C14 JC4 17 JC4 C16 C15 C 0 1 N N N 30.538 5.814 -23.061 -5.477 0.234 1.002 C16 JC4 18 JC4 O17 O4 O 0 1 N N N 30.290 6.122 -21.858 -6.399 -0.747 0.947 O17 JC4 19 JC4 O18 O5 O 0 1 N N N 31.553 5.125 -23.355 -5.715 1.259 1.608 O18 JC4 20 JC4 C19 C16 C 0 1 Y N N 28.333 6.742 -23.823 -3.899 -1.116 -0.375 C19 JC4 21 JC4 N21 N1 N 1 1 N N N 26.194 7.645 -24.500 -2.396 -2.526 -1.746 N21 JC4 22 JC4 O22 O6 O 0 1 N N N 25.693 7.377 -23.279 -3.232 -3.411 -1.794 O22 JC4 23 JC4 O23 O7 O -1 1 N N N 25.537 8.297 -25.307 -1.324 -2.671 -2.305 O23 JC4 24 JC4 C25 C17 C 0 1 N N R 32.352 2.986 -27.240 2.228 -1.276 1.270 C25 JC4 25 JC4 O26 O8 O 0 1 N N N 33.497 3.806 -26.936 1.433 -1.522 2.431 O26 JC4 26 JC4 C27 C18 C 0 1 N N S 32.807 1.637 -27.669 3.703 -1.530 1.596 C27 JC4 27 JC4 O28 O9 O 0 1 N N N 33.466 0.970 -26.554 3.887 -2.905 1.938 O28 JC4 28 JC4 C29 C19 C 0 1 N N R 31.675 0.817 -28.172 4.552 -1.189 0.368 C29 JC4 29 JC4 O30 O10 O 0 1 N N N 30.760 0.584 -27.084 4.201 -2.057 -0.711 O30 JC4 30 JC4 H1 H1 H 0 1 N N N 28.918 8.587 -30.730 -0.637 5.301 -0.748 H1 JC4 31 JC4 H2 H2 H 0 1 N N N 27.198 7.488 -26.930 -0.783 -0.407 -1.451 H2 JC4 32 JC4 H3 H3 H 0 1 N N N 27.937 0.420 -29.582 5.413 2.261 -2.404 H3 JC4 33 JC4 H4 H4 H 0 1 N N N 29.631 1.286 -30.936 4.721 -0.009 -2.131 H4 JC4 34 JC4 H5 H5 H 0 1 N N N 30.118 -0.231 -30.106 6.142 0.376 -1.130 H5 JC4 35 JC4 H6 H6 H 0 1 N N N 31.739 1.747 -30.083 4.594 0.928 0.770 H6 JC4 36 JC4 H7 H7 H 0 1 N N N 32.197 4.026 -29.121 2.330 0.843 1.649 H7 JC4 37 JC4 H8 H8 H 0 1 N N N 31.381 5.104 -30.341 2.307 2.468 0.475 H8 JC4 38 JC4 H9 H9 H 0 1 N N N 30.423 6.900 -31.744 1.677 4.773 -0.106 H9 JC4 39 JC4 H10 H10 H 0 1 N N N 28.348 8.461 -28.335 -2.339 3.526 -0.814 H10 JC4 40 JC4 H11 H11 H 0 1 N N N 30.998 5.940 -25.759 -3.427 1.988 0.919 H11 JC4 41 JC4 H12 H12 H 0 1 N N N 30.962 5.760 -21.293 -7.235 -0.589 1.406 H12 JC4 42 JC4 H13 H13 H 0 1 N N N 28.018 6.760 -22.790 -4.638 -1.902 -0.419 H13 JC4 43 JC4 H14 H14 H 0 1 N N N 31.729 2.880 -26.339 1.912 -1.940 0.465 H14 JC4 44 JC4 H15 H15 H 0 1 N N N 34.025 3.380 -26.271 0.486 -1.375 2.298 H15 JC4 45 JC4 H16 H16 H 0 1 N N N 33.534 1.761 -28.485 4.004 -0.902 2.435 H16 JC4 46 JC4 H17 H17 H 0 1 N N N 34.186 1.506 -26.244 3.372 -3.192 2.704 H17 JC4 47 JC4 H18 H18 H 0 1 N N N 32.061 -0.142 -28.549 5.608 -1.314 0.609 H18 JC4 48 JC4 H19 H19 H 0 1 N N N 31.210 0.126 -26.384 4.343 -2.995 -0.524 H19 JC4 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JC4 C09 C10 DOUB Y N 1 JC4 C09 C08 SING Y N 2 JC4 C10 C11 SING Y N 3 JC4 C02 C03 SING N N 4 JC4 C02 O01 SING N N 5 JC4 C08 C07 DOUB Y N 6 JC4 C03 O04 SING N N 7 JC4 C03 C29 SING N N 8 JC4 O04 C05 SING N N 9 JC4 C11 C12 DOUB Y N 10 JC4 C07 C12 SING Y N 11 JC4 C07 O06 SING N N 12 JC4 C05 O06 SING N N 13 JC4 C05 C25 SING N N 14 JC4 C29 C27 SING N N 15 JC4 C29 O30 SING N N 16 JC4 C12 C13 SING N N 17 JC4 C27 C25 SING N N 18 JC4 C27 O28 SING N N 19 JC4 C25 O26 SING N N 20 JC4 C13 C24 DOUB Y N 21 JC4 C13 C14 SING Y N 22 JC4 C24 C20 SING Y N 23 JC4 C14 C15 DOUB Y N 24 JC4 O23 N21 SING N N 25 JC4 C20 N21 SING N N 26 JC4 C20 C19 DOUB Y N 27 JC4 N21 O22 DOUB N N 28 JC4 C15 C19 SING Y N 29 JC4 C15 C16 SING N N 30 JC4 O18 C16 DOUB N N 31 JC4 C16 O17 SING N N 32 JC4 C10 H1 SING N N 33 JC4 C24 H2 SING N N 34 JC4 O01 H3 SING N N 35 JC4 C02 H4 SING N N 36 JC4 C02 H5 SING N N 37 JC4 C03 H6 SING N N 38 JC4 C05 H7 SING N N 39 JC4 C08 H8 SING N N 40 JC4 C09 H9 SING N N 41 JC4 C11 H10 SING N N 42 JC4 C14 H11 SING N N 43 JC4 O17 H12 SING N N 44 JC4 C19 H13 SING N N 45 JC4 C25 H14 SING N N 46 JC4 O26 H15 SING N N 47 JC4 C27 H16 SING N N 48 JC4 O28 H17 SING N N 49 JC4 C29 H18 SING N N 50 JC4 O30 H19 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JC4 SMILES ACDLabs 12.01 "c3cc(c1cc([N+](=O)[O-])cc(C(O)=O)c1)c(OC2OC(CO)C(C(C2O)O)O)cc3" JC4 InChI InChI 1.03 "InChI=1S/C19H19NO10/c21-8-14-15(22)16(23)17(24)19(30-14)29-13-4-2-1-3-12(13)9-5-10(18(25)26)7-11(6-9)20(27)28/h1-7,14-17,19,21-24H,8H2,(H,25,26)/t14-,15+,16+,17-,19-/m1/s1" JC4 InChIKey InChI 1.03 GCARVRRYRBFOAI-DIKXUDHVSA-N JC4 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](Oc2ccccc2c3cc(cc(c3)[N+]([O-])=O)C(O)=O)[C@H](O)[C@@H](O)[C@H]1O" JC4 SMILES CACTVS 3.385 "OC[CH]1O[CH](Oc2ccccc2c3cc(cc(c3)[N+]([O-])=O)C(O)=O)[CH](O)[CH](O)[CH]1O" JC4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)c2cc(cc(c2)[N+](=O)[O-])C(=O)O)O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O" JC4 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)c2cc(cc(c2)[N+](=O)[O-])C(=O)O)OC3C(C(C(C(O3)CO)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JC4 "SYSTEMATIC NAME" ACDLabs 12.01 "2'-(beta-D-galactopyranosyloxy)-5-nitro[1,1'-biphenyl]-3-carboxylic acid" JC4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxyphenyl]-5-nitro-benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JC4 "Create component" 2018-08-29 RCSB JC4 "Initial release" 2019-09-04 RCSB ##