data_JCD # _chem_comp.id JCD _chem_comp.name "2'-{[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]oxy}-5-nitro[1,1'-biphenyl]-3-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 N2 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-08-29 _chem_comp.pdbx_modified_date 2019-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 462.407 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JCD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6MAQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JCD N N1 N 1 1 N N N 31.466 6.124 -22.578 -2.356 -1.947 -2.344 N JCD 1 JCD C C1 C 0 1 N N N 30.288 0.505 -29.509 5.157 0.965 -1.280 C JCD 2 JCD O O1 O 0 1 N N N 29.112 0.560 -28.691 5.022 2.387 -1.337 O JCD 3 JCD C1 C2 C 0 1 N N R 31.464 1.185 -28.842 4.332 0.421 -0.111 C1 JCD 4 JCD C10 C3 C 0 1 Y N N 28.532 6.804 -25.635 -3.171 1.252 0.353 C10 JCD 5 JCD C11 C4 C 0 1 Y N N 28.219 6.849 -24.336 -4.138 0.276 0.113 C11 JCD 6 JCD C12 C5 C 0 1 N N N 26.817 7.187 -23.957 -5.448 0.347 0.792 C12 JCD 7 JCD C13 C6 C 0 1 Y N N 29.245 6.617 -23.278 -3.864 -0.770 -0.772 C13 JCD 8 JCD C14 C7 C 0 1 Y N N 30.512 6.336 -23.609 -2.641 -0.837 -1.408 C14 JCD 9 JCD C15 C8 C 0 1 Y N N 30.871 6.289 -25.092 -1.680 0.128 -1.173 C15 JCD 10 JCD C16 C9 C 0 1 N N R 32.749 2.546 -26.698 2.233 -1.302 0.862 C16 JCD 11 JCD C17 C10 C 0 1 N N N 33.900 3.931 -24.960 0.094 -2.042 1.765 C17 JCD 12 JCD C18 C11 C 0 1 N N N 35.100 4.807 -24.657 -0.769 -2.508 2.910 C18 JCD 13 JCD C19 C12 C 0 1 N N R 33.235 1.188 -27.138 3.699 -1.631 1.159 C19 JCD 14 JCD C2 C13 C 0 1 N N S 32.050 3.240 -27.852 2.082 0.212 0.692 C2 JCD 15 JCD C20 C14 C 0 1 N N R 32.064 0.403 -27.679 4.573 -1.084 0.027 C20 JCD 16 JCD C3 C15 C 0 1 Y N N 31.005 5.402 -28.160 0.398 1.837 0.275 C3 JCD 17 JCD C4 C16 C 0 1 Y N N 31.263 5.369 -29.527 1.359 2.810 0.502 C4 JCD 18 JCD C5 C17 C 0 1 Y N N 30.762 6.404 -30.288 1.024 4.148 0.411 C5 JCD 19 JCD C6 C18 C 0 1 Y N N 30.027 7.424 -29.750 -0.269 4.524 0.093 C6 JCD 20 JCD C7 C19 C 0 1 Y N N 29.766 7.450 -28.397 -1.236 3.565 -0.135 C7 JCD 21 JCD C8 C20 C 0 1 Y N N 30.248 6.448 -27.556 -0.909 2.214 -0.046 C8 JCD 22 JCD C9 C21 C 0 1 Y N N 29.939 6.497 -26.065 -1.943 1.180 -0.296 C9 JCD 23 JCD N1 N2 N 0 1 N N N 33.833 3.382 -26.248 1.394 -1.755 1.975 N1 JCD 24 JCD O1 O2 O 0 1 N N N 31.017 2.447 -28.406 2.944 0.660 -0.356 O1 JCD 25 JCD O2 O3 O 0 1 N N N 31.478 4.401 -27.304 0.727 0.522 0.359 O2 JCD 26 JCD O3 O4 O 0 1 N N N 26.427 7.021 -22.774 -6.380 -0.596 0.559 O3 JCD 27 JCD O4 O5 O 0 1 N N N 26.053 7.674 -24.818 -5.684 1.258 1.561 O4 JCD 28 JCD O5 O6 O -1 1 N N N 32.613 6.519 -22.716 -1.276 -2.012 -2.902 O5 JCD 29 JCD O6 O7 O 0 1 N N N 31.134 5.574 -21.529 -3.201 -2.799 -2.553 O6 JCD 30 JCD O7 O8 O 0 1 N N N 33.063 3.711 -24.101 -0.382 -1.925 0.656 O7 JCD 31 JCD O8 O9 O 0 1 N N N 33.850 0.526 -26.044 3.862 -3.048 1.247 O8 JCD 32 JCD O9 O10 O 0 1 N N N 31.131 0.183 -26.620 4.232 -1.737 -1.198 O9 JCD 33 JCD H6 H1 H 0 1 N N N 30.081 1.007 -30.466 4.798 0.528 -2.212 H6 JCD 34 JCD H7 H2 H 0 1 N N N 30.544 -0.548 -29.696 6.206 0.705 -1.136 H7 JCD 35 JCD H5 H3 H 0 1 N N N 28.395 0.126 -29.137 5.520 2.800 -2.056 H5 JCD 36 JCD H H4 H 0 1 N N N 32.251 1.319 -29.599 4.631 0.924 0.809 H JCD 37 JCD H12 H5 H 0 1 N N N 27.771 6.989 -26.378 -3.377 2.062 1.036 H12 JCD 38 JCD H14 H6 H 0 1 N N N 28.964 6.676 -22.237 -4.611 -1.527 -0.960 H14 JCD 39 JCD H15 H7 H 0 1 N N N 31.892 6.085 -25.378 -0.725 0.069 -1.673 H15 JCD 40 JCD H2 H8 H 0 1 N N N 32.025 2.412 -25.881 1.924 -1.805 -0.054 H2 JCD 41 JCD H17 H9 H 0 1 N N N 35.047 5.154 -23.615 -0.728 -3.596 2.976 H17 JCD 42 JCD H18 H10 H 0 1 N N N 36.023 4.227 -24.804 -0.404 -2.073 3.840 H18 JCD 43 JCD H19 H11 H 0 1 N N N 35.100 5.675 -25.333 -1.798 -2.193 2.740 H19 JCD 44 JCD H3 H12 H 0 1 N N N 33.967 1.325 -27.948 3.992 -1.171 2.103 H3 JCD 45 JCD H1 H13 H 0 1 N N N 32.793 3.498 -28.621 2.351 0.711 1.623 H1 JCD 46 JCD H4 H14 H 0 1 N N N 32.431 -0.562 -28.059 5.623 -1.265 0.257 H4 JCD 47 JCD H8 H15 H 0 1 N N N 31.832 4.567 -29.973 2.369 2.523 0.751 H8 JCD 48 JCD H9 H16 H 0 1 N N N 30.958 6.409 -31.350 1.775 4.903 0.589 H9 JCD 49 JCD H10 H17 H 0 1 N N N 29.650 8.211 -30.387 -0.523 5.571 0.023 H10 JCD 50 JCD H11 H18 H 0 1 N N N 29.180 8.257 -27.983 -2.244 3.862 -0.382 H11 JCD 51 JCD H16 H19 H 0 1 N N N 34.576 3.581 -26.887 1.774 -1.849 2.862 H16 JCD 52 JCD H13 H20 H 0 1 N N N 25.527 7.315 -22.693 -7.222 -0.507 1.026 H13 JCD 53 JCD H20 H21 H 0 1 N N N 34.580 1.045 -25.729 4.768 -3.329 1.434 H20 JCD 54 JCD H21 H22 H 0 1 N N N 31.552 -0.306 -25.923 4.744 -1.435 -1.960 H21 JCD 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JCD C5 C6 DOUB Y N 1 JCD C5 C4 SING Y N 2 JCD C6 C7 SING Y N 3 JCD C4 C3 DOUB Y N 4 JCD C C1 SING N N 5 JCD C O SING N N 6 JCD C1 O1 SING N N 7 JCD C1 C20 SING N N 8 JCD O1 C2 SING N N 9 JCD C7 C8 DOUB Y N 10 JCD C3 C8 SING Y N 11 JCD C3 O2 SING N N 12 JCD C2 O2 SING N N 13 JCD C2 C16 SING N N 14 JCD C20 C19 SING N N 15 JCD C20 O9 SING N N 16 JCD C8 C9 SING N N 17 JCD C19 C16 SING N N 18 JCD C19 O8 SING N N 19 JCD C16 N1 SING N N 20 JCD N1 C17 SING N N 21 JCD C9 C10 DOUB Y N 22 JCD C9 C15 SING Y N 23 JCD C10 C11 SING Y N 24 JCD C15 C14 DOUB Y N 25 JCD C17 C18 SING N N 26 JCD C17 O7 DOUB N N 27 JCD O4 C12 DOUB N N 28 JCD C11 C12 SING N N 29 JCD C11 C13 DOUB Y N 30 JCD C12 O3 SING N N 31 JCD C14 C13 SING Y N 32 JCD C14 N SING N N 33 JCD O5 N SING N N 34 JCD N O6 DOUB N N 35 JCD C H6 SING N N 36 JCD C H7 SING N N 37 JCD O H5 SING N N 38 JCD C1 H SING N N 39 JCD C10 H12 SING N N 40 JCD C13 H14 SING N N 41 JCD C15 H15 SING N N 42 JCD C16 H2 SING N N 43 JCD C18 H17 SING N N 44 JCD C18 H18 SING N N 45 JCD C18 H19 SING N N 46 JCD C19 H3 SING N N 47 JCD C2 H1 SING N N 48 JCD C20 H4 SING N N 49 JCD C4 H8 SING N N 50 JCD C5 H9 SING N N 51 JCD C6 H10 SING N N 52 JCD C7 H11 SING N N 53 JCD N1 H16 SING N N 54 JCD O3 H13 SING N N 55 JCD O8 H20 SING N N 56 JCD O9 H21 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JCD SMILES ACDLabs 12.01 "[N+](=O)(c1cc(cc(c1)c3c(OC2C(NC(C)=O)C(O)C(C(CO)O2)O)cccc3)C(O)=O)[O-]" JCD InChI InChI 1.03 "InChI=1S/C21H22N2O10/c1-10(25)22-17-19(27)18(26)16(9-24)33-21(17)32-15-5-3-2-4-14(15)11-6-12(20(28)29)8-13(7-11)23(30)31/h2-8,16-19,21,24,26-27H,9H2,1H3,(H,22,25)(H,28,29)/t16-,17-,18+,19-,21-/m1/s1" JCD InChIKey InChI 1.03 MUERTXQUUVQXJH-GQUPQBGVSA-N JCD SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1Oc2ccccc2c3cc(cc(c3)[N+]([O-])=O)C(O)=O" JCD SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1Oc2ccccc2c3cc(cc(c3)[N+]([O-])=O)C(O)=O" JCD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1Oc2ccccc2c3cc(cc(c3)[N+](=O)[O-])C(=O)O)CO)O)O" JCD SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1C(C(C(OC1Oc2ccccc2c3cc(cc(c3)[N+](=O)[O-])C(=O)O)CO)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JCD "SYSTEMATIC NAME" ACDLabs 12.01 "2'-{[2-(acetylamino)-2-deoxy-beta-D-galactopyranosyl]oxy}-5-nitro[1,1'-biphenyl]-3-carboxylic acid" JCD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[2-[(2~{S},3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxyphenyl]-5-nitro-benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JCD "Create component" 2018-08-29 RCSB JCD "Initial release" 2019-09-04 RCSB ##