data_JCI # _chem_comp.id JCI _chem_comp.name "(3~{R},5~{R})-3-[2-[[ethynyl(methyl)amino]methyl]-1,3-thiazol-4-yl]-5-[3-(2-nitrophenyl)-1,2,4-oxadiazol-5-yl]pyrrolidin-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H18 N6 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-07 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.449 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JCI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q4B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JCI C10 C1 C 0 1 N N R N N N 1.357 5.763 10.098 -2.108 -1.804 -0.643 C10 JCI 1 JCI C14 C2 C 0 1 N N R N N N 0.578 4.001 8.743 0.004 -1.613 0.584 C14 JCI 2 JCI C15 C3 C 0 1 Y N N N N N -0.140 2.760 9.346 1.446 -1.324 0.257 C15 JCI 3 JCI C17 C4 C 0 1 Y N N N N N -1.740 1.378 9.903 3.447 -0.623 0.294 C17 JCI 4 JCI C19 C5 C 0 1 Y N N N N N -3.202 -0.543 9.683 5.285 -0.227 1.932 C19 JCI 5 JCI C20 C6 C 0 1 Y N N N N N -4.455 -1.156 9.843 6.460 0.397 2.298 C20 JCI 6 JCI C21 C7 C 0 1 Y N N N N N -5.520 -0.452 10.391 7.065 1.296 1.438 C21 JCI 7 JCI C29 C8 C 0 1 N N N N N N 0.354 5.577 9.262 -0.933 -0.842 -0.371 C29 JCI 8 JCI C30 C9 C 0 1 Y N N N N N 2.958 7.752 10.401 -4.579 -1.819 -0.284 C30 JCI 9 JCI C06 C10 C 0 1 N N N N N N 0.070 10.671 10.552 -4.909 1.737 1.415 C06 JCI 10 JCI C07 C11 C 0 1 Y N N N N N 1.025 9.432 10.471 -4.633 0.409 0.759 C07 JCI 11 JCI C09 C12 C 0 1 Y N N N N N 1.652 7.280 10.279 -3.402 -1.196 -0.169 C09 JCI 12 JCI C12 C13 C 0 1 N N N N N N 2.610 4.997 9.411 -1.782 -3.075 0.170 C12 JCI 13 JCI C18 C14 C 0 1 Y N N N N N -3.004 0.800 10.076 4.707 0.050 0.695 C18 JCI 14 JCI C22 C15 C 0 1 Y N N N N N -5.337 0.884 10.785 6.496 1.575 0.208 C22 JCI 15 JCI C23 C16 C 0 1 Y N N N N N -4.080 1.496 10.617 5.318 0.960 -0.165 C23 JCI 16 JCI N04 N1 N 0 1 N N N N N N 0.474 11.680 9.565 -5.174 2.745 0.385 N04 JCI 17 JCI N08 N2 N 0 1 Y N N N N N 0.685 8.161 10.322 -3.467 -0.006 0.393 N08 JCI 18 JCI N13 N3 N 0 1 N N N N N N 1.922 3.689 8.925 -0.306 -3.045 0.338 N13 JCI 19 JCI N16 N4 N 0 1 Y N N N N N -1.465 2.538 9.327 2.277 -0.606 0.971 N16 JCI 20 JCI N24 N5 N 0 1 N N N N N N -3.907 2.883 11.046 4.711 1.259 -1.482 N24 JCI 21 JCI N27 N6 N 0 1 Y N N N N N -0.599 0.847 10.291 3.261 -1.347 -0.780 N27 JCI 22 JCI O11 O1 O 0 1 N N N N N N 1.122 5.095 11.360 -2.185 -2.110 -2.037 O11 JCI 23 JCI O25 O2 O 0 1 N N N N N N -4.611 3.739 10.673 5.305 1.959 -2.282 O25 JCI 24 JCI O26 O3 O 0 1 N N N N N N -3.036 3.101 11.788 3.616 0.806 -1.764 O26 JCI 25 JCI O28 O4 O 0 1 Y N N N N N 0.415 1.712 9.938 2.119 -1.756 -0.814 O28 JCI 26 JCI S31 S1 S 0 1 Y N N N N N 2.749 9.445 10.575 -5.821 -0.762 0.383 S31 JCI 27 JCI H141 H1 H 0 0 N N N N N N 0.355 4.008 7.666 -0.210 -1.350 1.620 H141 JCI 28 JCI H191 H2 H 0 0 N N N N N N -2.383 -1.102 9.256 4.815 -0.932 2.602 H191 JCI 29 JCI H201 H3 H 0 0 N N N N N N -4.592 -2.183 9.538 6.908 0.184 3.257 H201 JCI 30 JCI H211 H4 H 0 0 N N N N N N -6.482 -0.928 10.513 7.984 1.783 1.728 H211 JCI 31 JCI H292 H5 H 0 0 N N N N N N 0.407 6.282 8.419 -0.414 -0.605 -1.300 H292 JCI 32 JCI H291 H6 H 0 0 N N N N N N -0.613 5.690 9.774 -1.293 0.070 0.106 H291 JCI 33 JCI H301 H7 H 0 0 N N N N N N 3.879 7.188 10.389 -4.740 -2.797 -0.714 H301 JCI 34 JCI H061 H8 H 0 0 N N N N N N 0.122 11.106 11.561 -5.778 1.647 2.067 H061 JCI 35 JCI H062 H9 H 0 0 N N N N N N -0.962 10.350 10.344 -4.043 2.039 2.004 H062 JCI 36 JCI H122 H10 H 0 0 N N N N N N 3.025 5.573 8.570 -2.276 -3.041 1.141 H122 JCI 37 JCI H121 H11 H 0 0 N N N N N N 3.406 4.788 10.141 -2.086 -3.966 -0.379 H121 JCI 38 JCI H221 H12 H 0 0 N N N N N N -6.157 1.440 11.215 6.972 2.278 -0.459 H221 JCI 39 JCI H4 H16 H 0 1 N N N N N N 2.327 3.384 8.063 -0.019 -3.616 1.118 H4 JCI 40 JCI H111 H18 H 0 0 N N N N N N 0.392 5.508 11.806 -2.893 -2.729 -2.265 H111 JCI 41 JCI C1 C17 C 0 1 N N N N N N ? ? ? -6.543 2.970 -0.085 C1 JCI 42 JCI C2 C18 C 0 1 N N N N N N ? ? ? -4.152 3.469 -0.132 C2 JCI 43 JCI C3 C19 C 0 1 N N N N N N ? ? ? -3.267 4.097 -0.581 C3 JCI 44 JCI H1 H15 H 0 1 N N N N N N ? ? ? -7.017 3.737 0.528 H1 JCI 45 JCI H2 H16 H 0 1 N N N N N N ? ? ? -6.521 3.298 -1.124 H2 JCI 46 JCI H3 H17 H 0 1 N N N N N N ? ? ? -7.110 2.042 -0.009 H3 JCI 47 JCI H5 H18 H 0 1 N N N N N N ? ? ? -2.475 4.658 -0.982 H5 JCI 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JCI C06 N04 SING N N 1 JCI C07 C06 SING N N 2 JCI N08 C07 DOUB Y N 3 JCI C09 N08 SING Y N 4 JCI O11 C10 SING N N 5 JCI C12 C10 SING N N 6 JCI N13 C12 SING N N 7 JCI C14 N13 SING N N 8 JCI N16 C15 DOUB Y N 9 JCI C17 N16 SING Y N 10 JCI C19 C18 DOUB Y N 11 JCI C20 C19 SING Y N 12 JCI C21 C20 DOUB Y N 13 JCI C22 C21 SING Y N 14 JCI C23 C22 DOUB Y N 15 JCI N24 C23 SING N N 16 JCI O25 N24 DOUB N N 17 JCI O26 N24 DOUB N N 18 JCI C18 C17 SING N N 19 JCI N27 C17 DOUB Y N 20 JCI O28 N27 SING Y N 21 JCI C15 C14 SING N N 22 JCI C29 C14 SING N N 23 JCI C10 C09 SING N N 24 JCI C30 C09 DOUB Y N 25 JCI S31 C30 SING Y N 26 JCI C07 S31 SING Y N 27 JCI C10 C29 SING N N 28 JCI C15 O28 SING Y N 29 JCI C18 C23 SING Y N 30 JCI C14 H141 SING N N 31 JCI C19 H191 SING N N 32 JCI C20 H201 SING N N 33 JCI C21 H211 SING N N 34 JCI C29 H292 SING N N 35 JCI C29 H291 SING N N 36 JCI C30 H301 SING N N 37 JCI C06 H061 SING N N 38 JCI C06 H062 SING N N 39 JCI C12 H122 SING N N 40 JCI C12 H121 SING N N 41 JCI C22 H221 SING N N 42 JCI N13 H4 SING N N 43 JCI O11 H111 SING N N 44 JCI N04 C1 SING N N 45 JCI N04 C2 SING N N 46 JCI C2 C3 TRIP N N 47 JCI C1 H1 SING N N 48 JCI C1 H2 SING N N 49 JCI C1 H3 SING N N 50 JCI C3 H5 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JCI InChI InChI 1.06 "InChI=1S/C19H18N6O4S/c1-3-24(2)9-16-21-15(10-30-16)19(26)8-13(20-11-19)18-22-17(23-29-18)12-6-4-5-7-14(12)25(27)28/h1,4-7,10,13,20,26H,8-9,11H2,2H3/t13-,19-/m1/s1" JCI InChIKey InChI 1.06 MEVOALTZQOOEHC-BFUOFWGJSA-N JCI SMILES_CANONICAL CACTVS 3.385 "CN(Cc1scc(n1)[C@]2(O)CN[C@H](C2)c3onc(n3)c4ccccc4[N](=O)=O)C#C" JCI SMILES CACTVS 3.385 "CN(Cc1scc(n1)[C]2(O)CN[CH](C2)c3onc(n3)c4ccccc4[N](=O)=O)C#C" JCI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(Cc1nc(cs1)[C@]2(C[C@@H](NC2)c3nc(no3)c4ccccc4N(=O)=O)O)C#C" JCI SMILES "OpenEye OEToolkits" 2.0.7 "CN(Cc1nc(cs1)C2(CC(NC2)c3nc(no3)c4ccccc4N(=O)=O)O)C#C" # _pdbx_chem_comp_identifier.comp_id JCI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R},5~{R})-3-[2-[[ethynyl(methyl)amino]methyl]-1,3-thiazol-4-yl]-5-[3-(2-nitrophenyl)-1,2,4-oxadiazol-5-yl]pyrrolidin-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JCI "Create component" 2023-08-07 PDBE JCI "Initial release" 2024-08-14 RCSB #