data_JD9 # _chem_comp.id JD9 _chem_comp.name "2,6,11-trimethoxy-4,7,9-tris(oxidanyl)-1,12-bis[(2R)-2-oxidanylpropyl]perylene-3,10-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H28 O10" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-20 _chem_comp.pdbx_modified_date 2022-05-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 536.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JD9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EUU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JD9 C13 C1 C 0 1 Y N N -3.785 -3.977 26.518 -1.045 -4.247 -0.173 C13 JD9 1 JD9 C15 C2 C 0 1 Y N N -2.494 -5.544 24.645 -0.859 -1.462 -0.154 C15 JD9 2 JD9 C17 C3 C 0 1 Y N N 2.359 -5.085 25.083 4.001 -0.235 0.507 C17 JD9 3 JD9 C20 C4 C 0 1 Y N N -2.442 -3.903 26.238 0.147 -3.635 0.177 C20 JD9 4 JD9 C21 C5 C 0 1 Y N N -1.719 -4.888 25.554 0.306 -2.248 0.000 C21 JD9 5 JD9 C22 C6 C 0 1 N N N 0.125 -8.475 24.295 0.559 1.963 -0.472 C22 JD9 6 JD9 C24 C7 C 0 1 Y N N -2.027 -6.889 24.265 -0.810 -0.050 0.024 C24 JD9 7 JD9 C26 C8 C 0 1 N N N -4.680 -6.494 24.087 -3.288 -1.248 -0.546 C26 JD9 8 JD9 C28 C9 C 0 1 N N N 2.206 -7.356 24.371 2.799 1.962 0.503 C28 JD9 9 JD9 O01 O1 O 0 1 N N N 0.053 -2.288 25.749 2.911 -3.522 -0.574 O01 JD9 10 JD9 O02 O2 O 0 1 N N N 3.592 -7.427 24.357 3.702 2.571 1.046 O02 JD9 11 JD9 O03 O3 O 0 1 N N N 2.048 -9.771 23.805 1.684 4.018 -0.232 O03 JD9 12 JD9 O04 O4 O 0 1 N N N -1.752 -3.198 27.237 1.123 -4.402 0.717 O04 JD9 13 JD9 O05 O5 O 0 1 N N N -4.856 -7.699 21.925 -4.347 0.794 0.302 O05 JD9 14 JD9 O06 O6 O 0 1 N N N -6.069 -6.516 24.252 -4.308 -1.646 -1.069 O06 JD9 15 JD9 O07 O7 O 0 1 N N N 3.708 -5.343 25.406 5.144 0.363 0.915 O07 JD9 16 JD9 O08 O8 O 0 1 N N N -5.888 -4.692 25.665 -3.296 -4.099 -0.914 O08 JD9 17 JD9 O09 O9 O 0 1 N N N -0.682 -6.354 21.233 -3.150 0.547 3.114 O09 JD9 18 JD9 O10 O10 O 0 1 N N N -1.338 -11.597 25.795 1.056 3.266 -3.032 O10 JD9 19 JD9 C11 C10 C 0 1 N N N 0.853 -1.472 26.588 4.215 -4.105 -0.627 C11 JD9 20 JD9 C12 C11 C 0 1 Y N N -4.480 -4.619 25.530 -2.156 -3.485 -0.525 C12 JD9 21 JD9 C14 C12 C 0 1 N N R -0.768 -7.752 21.268 -1.934 1.238 2.822 C14 JD9 22 JD9 C16 C13 C 0 1 N N N -2.766 -7.353 22.942 -2.004 0.581 0.432 C16 JD9 23 JD9 C18 C14 C 0 1 N N N -4.064 -7.229 22.987 -3.216 0.090 0.064 C18 JD9 24 JD9 C19 C15 C 0 1 N N N -0.745 -9.747 24.430 -0.492 2.682 -1.271 C19 JD9 25 JD9 C23 C16 C 0 1 Y N N 0.505 -3.593 25.487 2.829 -2.240 -0.152 C23 JD9 26 JD9 C25 C17 C 0 1 N N N -2.113 -8.226 21.851 -1.973 1.751 1.381 C25 JD9 27 JD9 C27 C18 C 0 1 N N N 1.409 -8.527 24.083 1.647 2.675 -0.068 C27 JD9 28 JD9 C29 C19 C 0 1 Y N N -0.601 -7.081 24.288 0.419 0.607 -0.118 C29 JD9 29 JD9 C30 C20 C 0 1 Y N N 0.108 -6.036 25.113 1.610 -0.158 0.057 C30 JD9 30 JD9 C31 C21 C 0 1 Y N N -3.839 -5.742 25.075 -2.093 -2.091 -0.424 C31 JD9 31 JD9 C32 C22 C 0 1 Y N N 1.779 -3.735 25.313 4.003 -1.591 0.196 C32 JD9 32 JD9 C33 C23 C 0 1 Y N N -0.479 -4.751 25.063 1.597 -1.568 -0.033 C33 JD9 33 JD9 C34 C24 C 0 1 N N R -0.448 -10.522 25.720 -0.164 2.573 -2.761 C34 JD9 34 JD9 C35 C25 C 0 1 Y N N 1.602 -6.046 24.678 2.823 0.505 0.358 C35 JD9 35 JD9 C36 C26 C 0 1 N N N -0.632 -9.678 26.981 -1.297 3.197 -3.579 C36 JD9 36 JD9 C37 C27 C 0 1 N N N -4.846 -6.883 20.772 -4.775 1.698 -0.719 C37 JD9 37 JD9 C38 C28 C 0 1 N N N -0.672 -8.400 19.886 -1.778 2.421 3.780 C38 JD9 38 JD9 C39 C29 C 0 1 N N N 2.000 -10.209 22.459 1.173 4.816 0.837 C39 JD9 39 JD9 H1 H1 H 0 1 N N N -4.238 -3.576 27.412 -1.122 -5.322 -0.140 H1 JD9 40 JD9 H11 H11 H 0 1 N N N -2.333 -2.559 27.633 1.056 -4.506 1.676 H11 JD9 41 JD9 H13 H13 H 0 1 N N N 3.956 -6.198 25.074 5.674 0.731 0.194 H13 JD9 42 JD9 H14 H14 H 0 1 N N N -6.220 -5.413 25.142 -3.905 -4.293 -0.189 H14 JD9 43 JD9 H15 H15 H 0 1 N N N -0.747 -6.010 22.116 -3.944 1.092 3.026 H15 JD9 44 JD9 H16 H16 H 0 1 N N N -1.171 -12.092 26.589 1.030 4.208 -2.813 H16 JD9 45 JD9 H17 H17 H 0 1 N N N 0.378 -0.486 26.703 4.842 -3.531 -1.309 H17 JD9 46 JD9 H18 H18 H 0 1 N N N 0.953 -1.948 27.575 4.658 -4.096 0.370 H18 JD9 47 JD9 H19 H19 H 0 1 N N N 1.849 -1.349 26.138 4.139 -5.133 -0.980 H19 JD9 48 JD9 H21 H21 H 0 1 N N N 0.038 -8.161 21.895 -1.091 0.558 2.943 H21 JD9 49 JD9 H22 H22 H 0 1 N N N -1.805 -9.452 24.431 -1.466 2.231 -1.079 H22 JD9 50 JD9 H23 H23 H 0 1 N N N -0.548 -10.403 23.570 -0.515 3.732 -0.979 H23 JD9 51 JD9 H25 H25 H 0 1 N N N -2.826 -8.298 21.017 -2.865 2.360 1.236 H25 JD9 52 JD9 H26 H26 H 0 1 N N N -1.951 -9.225 22.282 -1.086 2.354 1.186 H26 JD9 53 JD9 H30 H30 H 0 1 N N N 2.424 -2.869 25.335 4.928 -2.147 0.221 H30 JD9 54 JD9 H33 H33 H 0 1 N N N 0.591 -10.882 25.684 -0.054 1.524 -3.034 H33 JD9 55 JD9 H35 H35 H 0 1 N N N -0.405 -10.288 27.868 -1.407 4.246 -3.307 H35 JD9 56 JD9 H36 H36 H 0 1 N N N 0.048 -8.814 26.946 -1.063 3.119 -4.641 H36 JD9 57 JD9 H37 H37 H 0 1 N N N -1.672 -9.324 27.036 -2.228 2.668 -3.373 H37 JD9 58 JD9 H38 H38 H 0 1 N N N -5.490 -7.330 20.000 -3.998 2.443 -0.893 H38 JD9 59 JD9 H39 H39 H 0 1 N N N -5.222 -5.881 21.029 -4.962 1.145 -1.639 H39 JD9 60 JD9 H40 H40 H 0 1 N N N -3.818 -6.802 20.389 -5.691 2.197 -0.402 H40 JD9 61 JD9 H41 H41 H 0 1 N N N -0.746 -9.493 19.987 -1.750 2.056 4.807 H41 JD9 62 JD9 H42 H42 H 0 1 N N N -1.493 -8.034 19.252 -0.850 2.949 3.557 H42 JD9 63 JD9 H43 H43 H 0 1 N N N 0.292 -8.139 19.425 -2.621 3.101 3.659 H43 JD9 64 JD9 H44 H44 H 0 1 N N N 2.522 -11.173 22.368 1.262 5.871 0.577 H44 JD9 65 JD9 H45 H45 H 0 1 N N N 0.951 -10.330 22.150 0.125 4.571 1.005 H45 JD9 66 JD9 H46 H46 H 0 1 N N N 2.489 -9.465 21.814 1.743 4.616 1.745 H46 JD9 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JD9 C38 C14 SING N N 1 JD9 C37 O05 SING N N 2 JD9 O09 C14 SING N N 3 JD9 C14 C25 SING N N 4 JD9 C25 C16 SING N N 5 JD9 O05 C18 SING N N 6 JD9 C39 O03 SING N N 7 JD9 C16 C18 DOUB N N 8 JD9 C16 C24 SING N N 9 JD9 C18 C26 SING N N 10 JD9 O03 C27 SING N N 11 JD9 C27 C22 DOUB N N 12 JD9 C27 C28 SING N N 13 JD9 C26 O06 DOUB N N 14 JD9 C26 C31 SING N N 15 JD9 C24 C29 DOUB Y N 16 JD9 C24 C15 SING Y N 17 JD9 C29 C22 SING N N 18 JD9 C29 C30 SING Y N 19 JD9 C22 C19 SING N N 20 JD9 O02 C28 DOUB N N 21 JD9 C28 C35 SING N N 22 JD9 C19 C34 SING N N 23 JD9 C15 C31 SING Y N 24 JD9 C15 C21 DOUB Y N 25 JD9 C35 C17 SING Y N 26 JD9 C35 C30 DOUB Y N 27 JD9 C33 C30 SING Y N 28 JD9 C33 C23 DOUB Y N 29 JD9 C33 C21 SING Y N 30 JD9 C31 C12 DOUB Y N 31 JD9 C17 C32 DOUB Y N 32 JD9 C17 O07 SING N N 33 JD9 C32 C23 SING Y N 34 JD9 C23 O01 SING N N 35 JD9 C12 O08 SING N N 36 JD9 C12 C13 SING Y N 37 JD9 C21 C20 SING Y N 38 JD9 C34 O10 SING N N 39 JD9 C34 C36 SING N N 40 JD9 O01 C11 SING N N 41 JD9 C20 C13 DOUB Y N 42 JD9 C20 O04 SING N N 43 JD9 C13 H1 SING N N 44 JD9 O04 H11 SING N N 45 JD9 O07 H13 SING N N 46 JD9 O08 H14 SING N N 47 JD9 O09 H15 SING N N 48 JD9 O10 H16 SING N N 49 JD9 C11 H17 SING N N 50 JD9 C11 H18 SING N N 51 JD9 C11 H19 SING N N 52 JD9 C14 H21 SING N N 53 JD9 C19 H22 SING N N 54 JD9 C19 H23 SING N N 55 JD9 C25 H25 SING N N 56 JD9 C25 H26 SING N N 57 JD9 C32 H30 SING N N 58 JD9 C34 H33 SING N N 59 JD9 C36 H35 SING N N 60 JD9 C36 H36 SING N N 61 JD9 C36 H37 SING N N 62 JD9 C37 H38 SING N N 63 JD9 C37 H39 SING N N 64 JD9 C37 H40 SING N N 65 JD9 C38 H41 SING N N 66 JD9 C38 H42 SING N N 67 JD9 C38 H43 SING N N 68 JD9 C39 H44 SING N N 69 JD9 C39 H45 SING N N 70 JD9 C39 H46 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JD9 InChI InChI 1.03 "InChI=1S/C29H28O10/c1-10(30)6-12-18-19-13(7-11(2)31)29(39-5)27(36)22-16(34)9-17(37-3)23(25(19)22)20-14(32)8-15(33)21(24(18)20)26(35)28(12)38-4/h8-11,30-34H,6-7H2,1-5H3/t10-,11-/m1/s1" JD9 InChIKey InChI 1.03 SZXDWEFJNLPCTA-GHMZBOCLSA-N JD9 SMILES_CANONICAL CACTVS 3.385 "COc1cc(O)c2C(=O)C(=C(C[C@@H](C)O)c3c4C(=C(OC)C(=O)c5c(O)cc(O)c(c1c23)c45)C[C@@H](C)O)OC" JD9 SMILES CACTVS 3.385 "COc1cc(O)c2C(=O)C(=C(C[CH](C)O)c3c4C(=C(OC)C(=O)c5c(O)cc(O)c(c1c23)c45)C[CH](C)O)OC" JD9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](CC1=C(C(=O)c2c(cc(c3c2c1c4c5c3c(cc(c5C(=O)C(=C4C[C@@H](C)O)OC)O)OC)O)O)OC)O" JD9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(CC1=C(C(=O)c2c(cc(c3c2c1c4c5c3c(cc(c5C(=O)C(=C4CC(C)O)OC)O)OC)O)O)OC)O" # _pdbx_chem_comp_identifier.comp_id JD9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2,6,11-trimethoxy-4,7,9-tris(oxidanyl)-1,12-bis[(2~{R})-2-oxidanylpropyl]perylene-3,10-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JD9 "Create component" 2021-05-20 PDBJ JD9 "Initial release" 2022-05-25 RCSB ##