data_JDC
#
_chem_comp.id JDC
_chem_comp.name "(3R)-7-hydroxy-N-{(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethylpiperidin-1-yl]-3-methylbutan-2-yl}-1,2,3,4-tetrahydroisoquinoline-3-carboxamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H39 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-02-02
_chem_comp.pdbx_modified_date 2012-03-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 465.628
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JDC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4DJH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JDC C1 C1 C 0 1 N N N 3.228 -20.404 59.644 -3.232 2.102 1.115 C1 JDC 1
JDC N2 N2 N 0 1 N N N 2.936 -21.782 59.533 -2.647 0.817 1.511 N2 JDC 2
JDC C3 C3 C 0 1 N N R 2.220 -22.058 58.337 -2.517 -0.065 0.340 C3 JDC 3
JDC C4 C4 C 0 1 N N N 0.851 -21.400 58.382 -3.914 -0.525 -0.078 C4 JDC 4
JDC C4A C4A C 0 1 Y N N 0.961 -19.967 58.829 -4.831 0.664 -0.205 C4A JDC 5
JDC C5 C5 C 0 1 Y N N -0.141 -19.043 58.627 -6.019 0.511 -0.902 C5 JDC 6
JDC C6 C6 C 0 1 Y N N -0.024 -17.693 59.047 -6.890 1.572 -1.042 C6 JDC 7
JDC C7 C7 C 0 1 Y N N 1.141 -17.250 59.652 -6.575 2.800 -0.480 C7 JDC 8
JDC O7 O7 O 0 1 N N N 1.266 -15.970 60.056 -7.428 3.850 -0.612 O7 JDC 9
JDC C8 C8 C 0 1 Y N N 2.195 -18.137 59.841 -5.387 2.953 0.217 C8 JDC 10
JDC C8A C8A C 0 1 Y N N 2.071 -19.527 59.410 -4.514 1.881 0.356 C8A JDC 11
JDC C1A C1A C 0 1 N N N 2.119 -23.567 58.150 -1.676 -1.263 0.700 C1A JDC 12
JDC O1 O1 O 0 1 N N N 1.695 -24.283 59.066 -1.515 -1.563 1.864 O1 JDC 13
JDC N2A N2A N 0 1 N N N 2.539 -24.145 56.890 -1.104 -2.001 -0.271 N2A JDC 14
JDC C2A C2A C 0 1 N N S 2.458 -25.552 56.688 -0.287 -3.166 0.079 C2A JDC 15
JDC C3A C3A C 0 1 N N N 1.632 -25.706 55.403 -1.107 -4.442 -0.117 C3A JDC 16
JDC C3D C3D C 0 1 N N N 0.213 -25.014 55.526 -0.254 -5.658 0.248 C3D JDC 17
JDC C3B C3B C 0 1 N N N 1.572 -27.074 54.846 -2.343 -4.397 0.783 C3B JDC 18
JDC C4D C4D C 0 1 N N N 3.814 -26.218 56.570 0.949 -3.211 -0.822 C4D JDC 19
JDC N11 N11 N 0 1 N N N 4.674 -26.306 57.845 1.678 -1.939 -0.717 N11 JDC 20
JDC C21 C21 C 0 1 N N N 4.035 -27.041 58.914 2.420 -1.861 0.547 C21 JDC 21
JDC C31 C31 C 0 1 N N R 4.678 -26.834 60.233 3.046 -0.472 0.688 C31 JDC 22
JDC C34 C34 C 0 1 N N N 4.316 -25.379 60.722 1.942 0.587 0.697 C34 JDC 23
JDC C41 C41 C 0 1 N N R 6.129 -27.025 60.204 3.987 -0.219 -0.494 C41 JDC 24
JDC C51 C51 C 0 1 N N N 6.755 -26.269 59.155 3.200 -0.354 -1.800 C51 JDC 25
JDC C61 C61 C 0 1 N N N 6.114 -26.474 57.826 2.569 -1.747 -1.869 C61 JDC 26
JDC C4E C4E C 0 1 N N N 6.419 -28.474 59.851 5.122 -1.244 -0.471 C4E JDC 27
JDC C1C C1C C 0 1 Y N N 6.728 -26.798 61.592 4.560 1.171 -0.393 C1C JDC 28
JDC C2C C2C C 0 1 Y N N 6.121 -27.381 62.709 5.387 1.501 0.663 C2C JDC 29
JDC C3C C3C C 0 1 Y N N 6.671 -27.177 63.991 5.915 2.780 0.756 C3C JDC 30
JDC O3C O3C O 0 1 N N N 6.035 -27.780 65.148 6.730 3.108 1.793 O3C JDC 31
JDC C4C C4C C 0 1 Y N N 7.853 -26.372 64.145 5.611 3.725 -0.214 C4C JDC 32
JDC C5C C5C C 0 1 Y N N 8.452 -25.797 63.034 4.784 3.390 -1.268 C5C JDC 33
JDC C6C C6C C 0 1 Y N N 7.907 -25.999 61.750 4.263 2.112 -1.360 C6C JDC 34
JDC H1 H1 H 0 1 N N N 4.006 -20.155 58.907 -3.438 2.694 2.007 H1 JDC 35
JDC H2 H2 H 0 1 N N N 3.608 -20.212 60.658 -2.526 2.639 0.481 H2 JDC 36
JDC H3 H3 H 0 1 N N N 2.383 -22.063 60.317 -3.194 0.379 2.236 H3 JDC 37
JDC H5 H5 H 0 1 N N N 2.770 -21.644 57.479 -2.050 0.480 -0.480 H5 JDC 38
JDC H6 H6 H 0 1 N N N 0.403 -21.431 57.378 -3.854 -1.040 -1.037 H6 JDC 39
JDC H7 H7 H 0 1 N N N 0.210 -21.949 59.087 -4.310 -1.209 0.674 H7 JDC 40
JDC H8 H8 H 0 1 N N N -1.051 -19.384 58.156 -6.265 -0.446 -1.339 H8 JDC 41
JDC H9 H9 H 0 1 N N N -0.845 -17.009 58.895 -7.814 1.447 -1.587 H9 JDC 42
JDC H10 H10 H 0 1 N N N 2.123 -15.843 60.446 -8.082 3.916 0.097 H10 JDC 43
JDC H11 H11 H 0 1 N N N 3.108 -17.797 60.308 -5.140 3.909 0.655 H11 JDC 44
JDC H12 H12 H 0 1 N N N 2.886 -23.555 56.161 -1.233 -1.761 -1.202 H12 JDC 45
JDC H13 H13 H 0 1 N N N 1.905 -26.020 57.516 0.025 -3.091 1.120 H13 JDC 46
JDC H14 H14 H 0 1 N N N 2.165 -25.106 54.651 -1.419 -4.517 -1.159 H14 JDC 47
JDC H15 H15 H 0 1 N N N 0.332 -24.004 55.945 0.058 -5.583 1.289 H15 JDC 48
JDC H16 H16 H 0 1 N N N -0.249 -24.945 54.530 -0.838 -6.568 0.108 H16 JDC 49
JDC H17 H17 H 0 1 N N N -0.430 -25.612 56.188 0.627 -5.690 -0.394 H17 JDC 50
JDC H18 H18 H 0 1 N N N 2.588 -27.492 54.789 -2.031 -4.322 1.825 H18 JDC 51
JDC H19 H19 H 0 1 N N N 0.951 -27.708 55.496 -2.951 -3.531 0.523 H19 JDC 52
JDC H20 H20 H 0 1 N N N 1.132 -27.040 53.838 -2.928 -5.307 0.643 H20 JDC 53
JDC H21 H21 H 0 1 N N N 3.647 -27.245 56.213 1.598 -4.028 -0.508 H21 JDC 54
JDC H22 H22 H 0 1 N N N 4.392 -25.658 55.820 0.640 -3.368 -1.856 H22 JDC 55
JDC H24 H24 H 0 1 N N N 2.986 -26.717 58.982 1.739 -2.039 1.380 H24 JDC 56
JDC H25 H25 H 0 1 N N N 4.073 -28.113 58.672 3.206 -2.616 0.554 H25 JDC 57
JDC H26 H26 H 0 1 N N N 4.240 -27.542 60.952 3.609 -0.419 1.620 H26 JDC 58
JDC H27 H27 H 0 1 N N N 4.780 -25.195 61.702 1.227 0.360 1.488 H27 JDC 59
JDC H28 H28 H 0 1 N N N 4.691 -24.644 59.995 2.382 1.569 0.876 H28 JDC 60
JDC H29 H29 H 0 1 N N N 3.224 -25.283 60.810 1.431 0.588 -0.265 H29 JDC 61
JDC H30 H30 H 0 1 N N N 7.810 -26.573 59.086 2.415 0.402 -1.832 H30 JDC 62
JDC H31 H31 H 0 1 N N N 6.697 -25.201 59.411 3.873 -0.217 -2.647 H31 JDC 63
JDC H32 H32 H 0 1 N N N 6.341 -27.495 57.484 3.355 -2.503 -1.850 H32 JDC 64
JDC H33 H33 H 0 1 N N N 6.540 -25.747 57.119 1.996 -1.842 -2.791 H33 JDC 65
JDC H34 H34 H 0 1 N N N 5.972 -29.133 60.609 4.707 -2.249 -0.547 H34 JDC 66
JDC H35 H35 H 0 1 N N N 5.989 -28.704 58.865 5.791 -1.064 -1.313 H35 JDC 67
JDC H36 H36 H 0 1 N N N 7.507 -28.634 59.822 5.679 -1.150 0.461 H36 JDC 68
JDC H37 H37 H 0 1 N N N 5.234 -27.985 62.590 5.622 0.764 1.417 H37 JDC 69
JDC H38 H38 H 0 1 N N N 6.521 -27.551 65.932 7.668 2.946 1.623 H38 JDC 70
JDC H39 H39 H 0 1 N N N 8.275 -26.215 65.127 6.021 4.722 -0.144 H39 JDC 71
JDC H40 H40 H 0 1 N N N 9.339 -25.192 63.153 4.547 4.125 -2.022 H40 JDC 72
JDC H41 H41 H 0 1 N N N 8.377 -25.552 60.886 3.620 1.851 -2.188 H41 JDC 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JDC C3B C3A SING N N 1
JDC C3A C3D SING N N 2
JDC C3A C2A SING N N 3
JDC C4D C2A SING N N 4
JDC C4D N11 SING N N 5
JDC C2A N2A SING N N 6
JDC N2A C1A SING N N 7
JDC C61 N11 SING N N 8
JDC C61 C51 SING N N 9
JDC N11 C21 SING N N 10
JDC C1A C3 SING N N 11
JDC C1A O1 DOUB N N 12
JDC C3 C4 SING N N 13
JDC C3 N2 SING N N 14
JDC C4 C4A SING N N 15
JDC C5 C4A DOUB Y N 16
JDC C5 C6 SING Y N 17
JDC C4A C8A SING Y N 18
JDC C21 C31 SING N N 19
JDC C6 C7 DOUB Y N 20
JDC C51 C41 SING N N 21
JDC C8A C1 SING N N 22
JDC C8A C8 DOUB Y N 23
JDC N2 C1 SING N N 24
JDC C7 C8 SING Y N 25
JDC C7 O7 SING N N 26
JDC C4E C41 SING N N 27
JDC C41 C31 SING N N 28
JDC C41 C1C SING N N 29
JDC C31 C34 SING N N 30
JDC C1C C6C DOUB Y N 31
JDC C1C C2C SING Y N 32
JDC C6C C5C SING Y N 33
JDC C2C C3C DOUB Y N 34
JDC C5C C4C DOUB Y N 35
JDC C3C C4C SING Y N 36
JDC C3C O3C SING N N 37
JDC C1 H1 SING N N 38
JDC C1 H2 SING N N 39
JDC N2 H3 SING N N 40
JDC C3 H5 SING N N 41
JDC C4 H6 SING N N 42
JDC C4 H7 SING N N 43
JDC C5 H8 SING N N 44
JDC C6 H9 SING N N 45
JDC O7 H10 SING N N 46
JDC C8 H11 SING N N 47
JDC N2A H12 SING N N 48
JDC C2A H13 SING N N 49
JDC C3A H14 SING N N 50
JDC C3D H15 SING N N 51
JDC C3D H16 SING N N 52
JDC C3D H17 SING N N 53
JDC C3B H18 SING N N 54
JDC C3B H19 SING N N 55
JDC C3B H20 SING N N 56
JDC C4D H21 SING N N 57
JDC C4D H22 SING N N 58
JDC C21 H24 SING N N 59
JDC C21 H25 SING N N 60
JDC C31 H26 SING N N 61
JDC C34 H27 SING N N 62
JDC C34 H28 SING N N 63
JDC C34 H29 SING N N 64
JDC C51 H30 SING N N 65
JDC C51 H31 SING N N 66
JDC C61 H32 SING N N 67
JDC C61 H33 SING N N 68
JDC C4E H34 SING N N 69
JDC C4E H35 SING N N 70
JDC C4E H36 SING N N 71
JDC C2C H37 SING N N 72
JDC O3C H38 SING N N 73
JDC C4C H39 SING N N 74
JDC C5C H40 SING N N 75
JDC C6C H41 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JDC SMILES ACDLabs 12.01 "O=C(NC(CN2CCC(c1cccc(O)c1)(C(C2)C)C)C(C)C)C4NCc3cc(O)ccc3C4"
JDC InChI InChI 1.03
"InChI=1S/C28H39N3O3/c1-18(2)26(30-27(34)25-13-20-8-9-24(33)12-21(20)15-29-25)17-31-11-10-28(4,19(3)16-31)22-6-5-7-23(32)14-22/h5-9,12,14,18-19,25-26,29,32-33H,10-11,13,15-17H2,1-4H3,(H,30,34)/t19-,25+,26+,28+/m0/s1"
JDC InChIKey InChI 1.03 ZLVXBBHTMQJRSX-VMGNSXQWSA-N
JDC SMILES_CANONICAL CACTVS 3.370 "CC(C)[C@@H](CN1CC[C@](C)([C@@H](C)C1)c2cccc(O)c2)NC(=O)[C@H]3Cc4ccc(O)cc4CN3"
JDC SMILES CACTVS 3.370 "CC(C)[CH](CN1CC[C](C)([CH](C)C1)c2cccc(O)c2)NC(=O)[CH]3Cc4ccc(O)cc4CN3"
JDC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1CN(CC[C@@]1(C)c2cccc(c2)O)C[C@H](C(C)C)NC(=O)[C@H]3Cc4ccc(cc4CN3)O"
JDC SMILES "OpenEye OEToolkits" 1.7.6 "CC1CN(CCC1(C)c2cccc(c2)O)CC(C(C)C)NC(=O)C3Cc4ccc(cc4CN3)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JDC "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-7-hydroxy-N-{(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethylpiperidin-1-yl]-3-methylbutan-2-yl}-1,2,3,4-tetrahydroisoquinoline-3-carboxamide"
JDC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3R)-N-[(2S)-1-[(3R,4R)-4-(3-hydroxyphenyl)-3,4-dimethyl-piperidin-1-yl]-3-methyl-butan-2-yl]-7-oxidanyl-1,2,3,4-tetrahydroisoquinoline-3-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JDC "Create component" 2012-02-02 RCSB
#