data_JDF # _chem_comp.id JDF _chem_comp.name steviol-19-o-glucoside _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H40 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-21 _chem_comp.pdbx_modified_date 2021-12-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.591 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JDF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ES1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JDF C1 C1 C 0 1 N N S 13.140 0.733 30.139 3.283 -0.431 0.455 C1 JDF 1 JDF C2 C2 C 0 1 N N R 13.279 2.226 29.868 4.716 -0.940 0.278 C2 JDF 2 JDF C3 C3 C 0 1 N N S 14.679 2.551 29.361 5.696 0.162 0.692 C3 JDF 3 JDF O3 O1 O 0 1 N N N 14.836 3.962 29.186 7.036 -0.278 0.461 O3 JDF 4 JDF C4 C4 C 0 1 N N S 15.720 2.011 30.321 5.418 1.417 -0.141 C4 JDF 5 JDF C5 C5 C 0 1 N N R 15.527 0.508 30.456 3.958 1.835 0.052 C5 JDF 6 JDF C6 C6 C 0 1 N N N 16.494 -0.129 31.429 3.656 3.052 -0.824 C6 JDF 7 JDF CAH C7 C 0 1 N N S 10.213 -2.318 32.444 -1.400 -1.770 0.040 CAH JDF 8 JDF CAI C8 C 0 1 N N N 10.339 -3.626 31.664 -1.615 -1.321 1.484 CAI JDF 9 JDF CAJ C9 C 0 1 N N N 9.940 -4.805 32.535 -3.125 -1.360 1.767 CAJ JDF 10 JDF CAK C10 C 0 1 N N R 10.807 -4.955 33.775 -3.857 -0.440 0.811 CAK JDF 11 JDF CAN C11 C 0 1 N N N 12.200 -5.534 33.451 -3.711 1.026 1.260 CAN JDF 12 JDF CAL C12 C 0 1 N N N 10.253 -6.062 34.721 -5.390 -0.657 0.913 CAL JDF 13 JDF CAM C13 C 0 1 N N N 11.465 -6.675 35.392 -6.007 0.691 0.584 CAM JDF 14 JDF CAA C14 C 0 1 N N N 11.486 -7.645 36.290 -7.283 0.952 0.446 CAA JDF 15 JDF CAO C15 C 0 1 N N S 12.695 -5.962 34.839 -4.862 1.684 0.452 CAO JDF 16 JDF OAW O2 O 0 1 N N N 13.829 -6.823 34.748 -5.212 2.977 0.952 OAW JDF 17 JDF CAP C16 C 0 1 N N N 13.009 -4.703 35.661 -4.398 1.727 -1.007 CAP JDF 18 JDF CAQ C17 C 0 1 N N N 11.797 -3.765 35.794 -4.200 0.329 -1.571 CAQ JDF 19 JDF CAR C18 C 0 1 N N R 10.903 -3.607 34.537 -3.483 -0.636 -0.645 CAR JDF 20 JDF CAS C19 C 0 1 N N S 11.174 -2.315 33.674 -1.986 -0.740 -0.919 CAS JDF 21 JDF CAT C20 C 0 1 N N N 12.655 -2.169 33.280 -1.323 0.627 -0.792 CAT JDF 22 JDF CAU C21 C 0 1 N N N 10.774 -1.097 34.531 -1.793 -1.236 -2.361 CAU JDF 23 JDF CAV C22 C 0 1 N N N 10.764 0.223 33.773 -0.309 -1.471 -2.632 CAV JDF 24 JDF CAF C23 C 0 1 N N N 9.851 0.172 32.566 0.219 -2.566 -1.714 CAF JDF 25 JDF CAE C24 C 0 1 N N R 10.158 -0.990 31.604 0.017 -2.211 -0.241 CAE JDF 26 JDF CAG C25 C 0 1 N N N 9.007 -1.060 30.578 0.291 -3.508 0.558 CAG JDF 27 JDF CAC C26 C 0 1 N N N 11.410 -0.756 30.744 1.043 -1.202 0.194 CAC JDF 28 JDF OAD O3 O 0 1 N N N 11.900 -1.616 30.071 0.692 -0.166 0.709 OAD JDF 29 JDF O1 O4 O 0 1 N N N 11.894 0.499 30.794 2.349 -1.450 0.010 O1 JDF 30 JDF O5 O5 O 0 1 N N N 14.194 0.257 30.963 3.101 0.754 -0.322 O5 JDF 31 JDF O6 O6 O 0 1 N N N 16.366 -1.552 31.440 2.329 3.513 -0.558 O6 JDF 32 JDF O4 O7 O 0 1 N N N 17.033 2.305 29.859 6.278 2.475 0.287 O4 JDF 33 JDF O2 O8 O 0 1 N N N 12.316 2.627 28.899 4.918 -2.093 1.098 O2 JDF 34 JDF H1 H1 H 0 1 N N N 13.155 0.204 29.175 3.104 -0.207 1.506 H1 JDF 35 JDF H2 H2 H 0 1 N N N 13.112 2.770 30.809 4.884 -1.203 -0.767 H2 JDF 36 JDF H3 H3 H 0 1 N N N 14.815 2.049 28.392 5.563 0.390 1.750 H3 JDF 37 JDF H4 H4 H 0 1 N N N 15.713 4.147 28.870 7.279 -1.074 0.953 H4 JDF 38 JDF H5 H5 H 0 1 N N N 15.560 2.473 31.306 5.599 1.202 -1.194 H5 JDF 39 JDF H6 H6 H 0 1 N N N 15.649 0.040 29.468 3.787 2.088 1.098 H6 JDF 40 JDF H7 H7 H 0 1 N N N 17.521 0.135 31.137 4.368 3.846 -0.601 H7 JDF 41 JDF H8 H8 H 0 1 N N N 16.290 0.256 32.439 3.739 2.774 -1.875 H8 JDF 42 JDF H9 H9 H 0 1 N N N 9.213 -2.376 32.898 -2.038 -2.685 -0.081 H9 JDF 43 JDF H10 H10 H 0 1 N N N 9.681 -3.587 30.783 -1.112 -1.996 2.174 H10 JDF 44 JDF H11 H11 H 0 1 N N N 11.382 -3.754 31.337 -1.247 -0.314 1.640 H11 JDF 45 JDF H12 H12 H 0 1 N N N 8.896 -4.667 32.853 -3.488 -2.381 1.644 H12 JDF 46 JDF H13 H13 H 0 1 N N N 10.023 -5.725 31.937 -3.308 -1.028 2.790 H13 JDF 47 JDF H14 H14 H 0 1 N N N 12.127 -6.394 32.769 -3.915 1.110 2.340 H14 JDF 48 JDF H15 H15 H 0 1 N N N 12.858 -4.771 33.009 -2.755 1.475 1.045 H15 JDF 49 JDF H16 H16 H 0 1 N N N 9.580 -5.623 35.472 -5.700 -1.405 0.190 H16 JDF 50 JDF H17 H17 H 0 1 N N N 9.709 -6.823 34.143 -5.641 -0.965 1.924 H17 JDF 51 JDF H18 H18 H 0 1 N N N 12.428 -7.990 36.690 -8.012 0.165 0.567 H18 JDF 52 JDF H19 H19 H 0 1 N N N 10.561 -8.092 36.624 -7.606 1.956 0.210 H19 JDF 53 JDF H20 H20 H 0 1 N N N 14.111 -7.070 35.621 -5.928 3.407 0.464 H20 JDF 54 JDF H21 H21 H 0 1 N N N 13.329 -5.010 36.668 -5.158 2.243 -1.605 H21 JDF 55 JDF H22 H22 H 0 1 N N N 13.826 -4.155 35.168 -3.473 2.297 -1.083 H22 JDF 56 JDF H23 H23 H 0 1 N N N 12.174 -2.767 36.063 -5.187 -0.089 -1.811 H23 JDF 57 JDF H24 H24 H 0 1 N N N 11.165 -4.150 36.608 -3.650 0.399 -2.513 H24 JDF 58 JDF H25 H25 H 0 1 N N N 9.892 -3.451 34.941 -3.887 -1.646 -0.919 H25 JDF 59 JDF H26 H26 H 0 1 N N N 13.278 -2.174 34.186 -0.288 0.562 -1.129 H26 JDF 60 JDF H27 H27 H 0 1 N N N 12.946 -3.008 32.631 -1.860 1.350 -1.406 H27 JDF 61 JDF H28 H28 H 0 1 N N N 12.799 -1.221 32.741 -1.346 0.948 0.250 H28 JDF 62 JDF H29 H29 H 0 1 N N N 9.764 -1.273 34.931 -2.343 -2.164 -2.493 H29 JDF 63 JDF H30 H30 H 0 1 N N N 11.488 -1.011 35.363 -2.168 -0.484 -3.054 H30 JDF 64 JDF H31 H31 H 0 1 N N N 11.787 0.448 33.436 -0.194 -1.802 -3.675 H31 JDF 65 JDF H32 H32 H 0 1 N N N 10.417 1.019 34.448 0.266 -0.558 -2.510 H32 JDF 66 JDF H33 H33 H 0 1 N N N 9.954 1.117 32.013 -0.312 -3.500 -1.927 H33 JDF 67 JDF H34 H34 H 0 1 N N N 8.815 0.065 32.919 1.282 -2.723 -1.909 H34 JDF 68 JDF H35 H35 H 0 1 N N N 8.056 -1.228 31.104 -0.410 -4.282 0.245 H35 JDF 69 JDF H36 H36 H 0 1 N N N 8.955 -0.113 30.020 1.311 -3.843 0.368 H36 JDF 70 JDF H37 H37 H 0 1 N N N 9.190 -1.889 29.878 0.165 -3.313 1.623 H37 JDF 71 JDF H38 H38 H 0 1 N N N 16.985 -1.921 32.059 2.069 4.285 -1.079 H38 JDF 72 JDF H39 H39 H 0 1 N N N 17.670 1.959 30.473 7.220 2.276 0.197 H39 JDF 73 JDF H40 H40 H 0 1 N N N 11.444 2.424 29.216 4.327 -2.830 0.893 H40 JDF 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JDF O2 C2 SING N N 1 JDF O3 C3 SING N N 2 JDF C3 C2 SING N N 3 JDF C3 C4 SING N N 4 JDF O4 C4 SING N N 5 JDF C2 C1 SING N N 6 JDF OAD CAC DOUB N N 7 JDF C1 O1 SING N N 8 JDF C1 O5 SING N N 9 JDF C4 C5 SING N N 10 JDF C5 O5 SING N N 11 JDF C5 C6 SING N N 12 JDF CAG CAE SING N N 13 JDF CAC O1 SING N N 14 JDF CAC CAE SING N N 15 JDF C6 O6 SING N N 16 JDF CAE CAH SING N N 17 JDF CAE CAF SING N N 18 JDF CAI CAH SING N N 19 JDF CAI CAJ SING N N 20 JDF CAH CAS SING N N 21 JDF CAJ CAK SING N N 22 JDF CAF CAV SING N N 23 JDF CAT CAS SING N N 24 JDF CAN CAK SING N N 25 JDF CAN CAO SING N N 26 JDF CAS CAU SING N N 27 JDF CAS CAR SING N N 28 JDF CAV CAU SING N N 29 JDF CAK CAR SING N N 30 JDF CAK CAL SING N N 31 JDF CAR CAQ SING N N 32 JDF CAL CAM SING N N 33 JDF OAW CAO SING N N 34 JDF CAO CAM SING N N 35 JDF CAO CAP SING N N 36 JDF CAM CAA DOUB N N 37 JDF CAP CAQ SING N N 38 JDF C1 H1 SING N N 39 JDF C2 H2 SING N N 40 JDF C3 H3 SING N N 41 JDF O3 H4 SING N N 42 JDF C4 H5 SING N N 43 JDF C5 H6 SING N N 44 JDF C6 H7 SING N N 45 JDF C6 H8 SING N N 46 JDF CAH H9 SING N N 47 JDF CAI H10 SING N N 48 JDF CAI H11 SING N N 49 JDF CAJ H12 SING N N 50 JDF CAJ H13 SING N N 51 JDF CAN H14 SING N N 52 JDF CAN H15 SING N N 53 JDF CAL H16 SING N N 54 JDF CAL H17 SING N N 55 JDF CAA H18 SING N N 56 JDF CAA H19 SING N N 57 JDF OAW H20 SING N N 58 JDF CAP H21 SING N N 59 JDF CAP H22 SING N N 60 JDF CAQ H23 SING N N 61 JDF CAQ H24 SING N N 62 JDF CAR H25 SING N N 63 JDF CAT H26 SING N N 64 JDF CAT H27 SING N N 65 JDF CAT H28 SING N N 66 JDF CAU H29 SING N N 67 JDF CAU H30 SING N N 68 JDF CAV H31 SING N N 69 JDF CAV H32 SING N N 70 JDF CAF H33 SING N N 71 JDF CAF H34 SING N N 72 JDF CAG H35 SING N N 73 JDF CAG H36 SING N N 74 JDF CAG H37 SING N N 75 JDF O6 H38 SING N N 76 JDF O4 H39 SING N N 77 JDF O2 H40 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JDF InChI InChI 1.03 "InChI=1S/C26H40O8/c1-14-11-25-9-5-16-23(2,17(25)6-10-26(14,32)13-25)7-4-8-24(16,3)22(31)34-21-20(30)19(29)18(28)15(12-27)33-21/h15-21,27-30,32H,1,4-13H2,2-3H3/t15-,16+,17+,18-,19+,20-,21+,23-,24-,25-,26+/m1/s1" JDF InChIKey InChI 1.03 OQPOFZJZPYRNFF-CULFPKEHSA-N JDF SMILES_CANONICAL CACTVS 3.385 "C[C@@]12CCC[C@](C)([C@H]1CC[C@]34CC(=C)[C@](O)(CC[C@@H]23)C4)C(=O)O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5O" JDF SMILES CACTVS 3.385 "C[C]12CCC[C](C)([CH]1CC[C]34CC(=C)[C](O)(CC[CH]23)C4)C(=O)O[CH]5O[CH](CO)[CH](O)[CH](O)[CH]5O" JDF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]12CCC[C@@]([C@H]1CC[C@]34[C@H]2CC[C@](C3)(C(=C)C4)O)(C)C(=O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O" JDF SMILES "OpenEye OEToolkits" 2.0.7 "CC12CCCC(C1CCC34C2CCC(C3)(C(=C)C4)O)(C)C(=O)OC5C(C(C(C(O5)CO)O)O)O" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JDF "Create component" 2021-05-21 PDBJ JDF "Initial release" 2021-12-08 RCSB ##