data_JDM # _chem_comp.id JDM _chem_comp.name "5-{2-[2-(hydroxymethyl)phenyl]ethyl}-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H14 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-02-27 _chem_comp.pdbx_modified_date 2014-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JDM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4JD4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JDM OAJ OAJ O 0 1 N N N 6.058 -15.696 -13.977 -2.866 -3.117 -0.030 OAJ JDM 1 JDM CAI CAI C 0 1 N N N 5.177 -14.761 -13.868 -1.914 -2.170 -0.137 CAI JDM 2 JDM OAK OAK O 0 1 N N N 3.898 -14.718 -13.992 -0.750 -2.491 -0.262 OAK JDM 3 JDM C4 C4 C 0 1 N N N 5.720 -13.390 -13.878 -2.288 -0.736 -0.103 C4 JDM 4 JDM N3 N3 N 0 1 N N N 5.286 -12.498 -14.884 -3.586 -0.362 0.171 N3 JDM 5 JDM C2 C2 C 0 1 N N N 5.731 -11.137 -14.870 -3.945 0.932 0.206 C2 JDM 6 JDM O2 O2 O 0 1 N N N 5.314 -10.428 -15.861 -5.101 1.219 0.452 O2 JDM 7 JDM N1 N1 N 0 1 N N N 6.554 -10.681 -13.883 -3.060 1.918 -0.022 N1 JDM 8 JDM C6 C6 C 0 1 N N N 6.946 -11.513 -12.840 -1.771 1.629 -0.297 C6 JDM 9 JDM O6 O6 O 0 1 N N N 7.652 -10.994 -11.990 -0.968 2.519 -0.504 O6 JDM 10 JDM C5 C5 C 0 1 N N N 6.455 -12.835 -12.807 -1.354 0.222 -0.336 C5 JDM 11 JDM CAL CAL C 0 1 N N N 6.793 -13.666 -11.596 0.076 -0.151 -0.633 CAL JDM 12 JDM CAM CAM C 0 1 N N N 5.886 -13.210 -10.377 0.862 -0.244 0.676 CAM JDM 13 JDM CAN CAN C 0 1 Y N N 5.881 -14.224 -9.294 2.314 -0.510 0.373 CAN JDM 14 JDM CAO CAO C 0 1 Y N N 6.944 -14.178 -8.361 2.774 -1.810 0.280 CAO JDM 15 JDM CAP CAP C 0 1 Y N N 7.051 -15.101 -7.311 4.106 -2.054 0.003 CAP JDM 16 JDM CAQ CAQ C 0 1 Y N N 6.133 -16.134 -7.287 4.978 -0.998 -0.183 CAQ JDM 17 JDM CAR CAR C 0 1 Y N N 5.065 -16.154 -8.122 4.518 0.303 -0.091 CAR JDM 18 JDM CAS CAS C 0 1 Y N N 4.915 -15.228 -9.190 3.184 0.546 0.182 CAS JDM 19 JDM CAT CAT C 0 1 N N N 3.883 -15.383 -10.136 2.682 1.964 0.277 CAT JDM 20 JDM OAU OAU O 0 1 N N N 2.695 -14.787 -9.799 3.750 2.868 -0.011 OAU JDM 21 JDM H1 H1 H 0 1 N N N 5.627 -16.514 -14.197 -2.574 -4.038 -0.058 H1 JDM 22 JDM H2 H2 H 0 1 N N N 4.670 -12.816 -15.604 -4.253 -1.046 0.342 H2 JDM 23 JDM H3 H3 H 0 1 N N N 6.880 -9.736 -13.910 -3.350 2.843 0.010 H3 JDM 24 JDM H4 H4 H 0 1 N N N 6.607 -14.728 -11.815 0.102 -1.115 -1.142 H4 JDM 25 JDM H5 H5 H 0 1 N N N 7.853 -13.525 -11.338 0.525 0.609 -1.273 H5 JDM 26 JDM H6 H6 H 0 1 N N N 6.275 -12.262 -9.977 0.770 0.695 1.222 H6 JDM 27 JDM H7 H7 H 0 1 N N N 4.856 -13.063 -10.733 0.462 -1.057 1.282 H7 JDM 28 JDM H8 H8 H 0 1 N N N 7.695 -13.409 -8.461 2.092 -2.636 0.426 H8 JDM 29 JDM H9 H9 H 0 1 N N N 7.817 -15.009 -6.555 4.465 -3.070 -0.069 H9 JDM 30 JDM H10 H10 H 0 1 N N N 6.270 -16.945 -6.586 6.018 -1.188 -0.400 H10 JDM 31 JDM H11 H11 H 0 1 N N N 4.300 -16.901 -7.970 5.199 1.128 -0.236 H11 JDM 32 JDM H12 H12 H 0 1 N N N 3.700 -16.460 -10.268 1.876 2.112 -0.441 H12 JDM 33 JDM H13 H13 H 0 1 N N N 4.224 -14.950 -11.088 2.310 2.151 1.285 H13 JDM 34 JDM H14 H14 H 0 1 N N N 2.058 -14.939 -10.487 3.498 3.801 0.031 H14 JDM 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JDM O2 C2 DOUB N N 1 JDM N3 C2 SING N N 2 JDM N3 C4 SING N N 3 JDM C2 N1 SING N N 4 JDM OAK CAI DOUB N N 5 JDM OAJ CAI SING N N 6 JDM N1 C6 SING N N 7 JDM C4 CAI SING N N 8 JDM C4 C5 DOUB N N 9 JDM C6 C5 SING N N 10 JDM C6 O6 DOUB N N 11 JDM C5 CAL SING N N 12 JDM CAL CAM SING N N 13 JDM CAM CAN SING N N 14 JDM CAT OAU SING N N 15 JDM CAT CAS SING N N 16 JDM CAN CAS DOUB Y N 17 JDM CAN CAO SING Y N 18 JDM CAS CAR SING Y N 19 JDM CAO CAP DOUB Y N 20 JDM CAR CAQ DOUB Y N 21 JDM CAP CAQ SING Y N 22 JDM OAJ H1 SING N N 23 JDM N3 H2 SING N N 24 JDM N1 H3 SING N N 25 JDM CAL H4 SING N N 26 JDM CAL H5 SING N N 27 JDM CAM H6 SING N N 28 JDM CAM H7 SING N N 29 JDM CAO H8 SING N N 30 JDM CAP H9 SING N N 31 JDM CAQ H10 SING N N 32 JDM CAR H11 SING N N 33 JDM CAT H12 SING N N 34 JDM CAT H13 SING N N 35 JDM OAU H14 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JDM SMILES ACDLabs 12.01 "O=C1NC(C(=O)O)=C(C(=O)N1)CCc2ccccc2CO" JDM InChI InChI 1.03 "InChI=1S/C14H14N2O5/c17-7-9-4-2-1-3-8(9)5-6-10-11(13(19)20)15-14(21)16-12(10)18/h1-4,17H,5-7H2,(H,19,20)(H2,15,16,18,21)" JDM InChIKey InChI 1.03 MDVINTUDORARNK-UHFFFAOYSA-N JDM SMILES_CANONICAL CACTVS 3.370 "OCc1ccccc1CCC2=C(NC(=O)NC2=O)C(O)=O" JDM SMILES CACTVS 3.370 "OCc1ccccc1CCC2=C(NC(=O)NC2=O)C(O)=O" JDM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(c(c1)CCC2=C(NC(=O)NC2=O)C(=O)O)CO" JDM SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(c(c1)CCC2=C(NC(=O)NC2=O)C(=O)O)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JDM "SYSTEMATIC NAME" ACDLabs 12.01 "5-{2-[2-(hydroxymethyl)phenyl]ethyl}-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" JDM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[2-[2-(hydroxymethyl)phenyl]ethyl]-2,4-bis(oxidanylidene)-1H-pyrimidine-6-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JDM "Create component" 2013-02-27 PDBJ JDM "Initial release" 2014-02-26 RCSB #