data_JDP # _chem_comp.id JDP _chem_comp.name "1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H23 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-04 _chem_comp.pdbx_modified_date 2019-01-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.472 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JDP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6MCK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JDP C22 C1 C 0 1 Y N N 66.818 28.498 62.914 -5.410 3.473 -1.192 C22 JDP 1 JDP C21 C2 C 0 1 Y N N 66.341 29.795 63.111 -5.992 3.843 0.006 C21 JDP 2 JDP O01 O1 O 0 1 N N N 68.481 27.968 54.787 6.473 0.579 -0.007 O01 JDP 3 JDP C02 C3 C 0 1 N N N 67.791 28.572 55.595 5.858 1.628 0.005 C02 JDP 4 JDP C03 C4 C 0 1 Y N N 67.996 28.418 57.062 4.384 1.618 0.007 C03 JDP 5 JDP C04 C5 C 0 1 Y N N 67.117 28.988 57.971 3.672 2.816 0.015 C04 JDP 6 JDP C05 C6 C 0 1 Y N N 67.275 28.835 59.354 2.289 2.803 0.017 C05 JDP 7 JDP C06 C7 C 0 1 Y N N 68.302 28.119 59.905 1.592 1.612 0.011 C06 JDP 8 JDP C07 C8 C 0 1 Y N N 69.155 27.560 59.007 2.274 0.401 0.003 C07 JDP 9 JDP C08 C9 C 0 1 Y N N 69.041 27.666 57.603 3.680 0.398 -0.005 C08 JDP 10 JDP C09 C10 C 0 1 Y N N 70.128 26.922 57.029 4.084 -1.006 -0.021 C09 JDP 11 JDP C10 C11 C 0 1 Y N N 70.828 26.413 58.058 2.958 -1.741 -0.027 C10 JDP 12 JDP C11 C12 C 0 1 N N N 72.064 25.567 57.933 2.907 -3.247 -0.042 C11 JDP 13 JDP N12 N1 N 0 1 Y N N 70.227 26.790 59.295 1.864 -0.918 -0.004 N12 JDP 14 JDP C13 C13 C 0 1 Y N N 70.571 26.485 60.572 0.540 -1.345 -0.005 C13 JDP 15 JDP N14 N2 N 0 1 Y N N 70.467 27.477 61.430 -0.429 -0.443 -0.004 N14 JDP 16 JDP C15 C14 C 0 1 Y N N 70.785 27.238 62.691 -1.703 -0.821 -0.002 C15 JDP 17 JDP N16 N3 N 0 1 N N N 70.789 28.324 63.504 -2.716 0.124 -0.001 N16 JDP 18 JDP C17 C15 C 0 1 N N N 70.102 28.593 64.738 -2.387 1.552 -0.000 C17 JDP 19 JDP C18 C16 C 0 1 Y N N 68.792 29.041 64.194 -3.658 2.361 0.002 C18 JDP 20 JDP C19 C17 C 0 1 Y N N 68.362 30.338 64.390 -4.240 2.731 1.200 C19 JDP 21 JDP C20 C18 C 0 1 Y N N 67.123 30.699 63.849 -5.406 3.473 1.202 C20 JDP 22 JDP C23 C19 C 0 1 Y N N 68.038 28.128 63.444 -4.244 2.731 -1.194 C23 JDP 23 JDP C24 C20 C 0 1 Y N N 71.198 25.950 63.092 -2.005 -2.186 -0.004 C24 JDP 24 JDP C25 C21 C 0 1 N N N 71.598 25.650 64.531 -3.443 -2.628 0.003 C25 JDP 25 JDP O26 O2 O 0 1 N N N 72.612 24.632 64.574 -3.536 -4.005 -0.361 O26 JDP 26 JDP C27 C22 C 0 1 N N N 72.331 23.427 63.769 -2.669 -4.851 0.405 C27 JDP 27 JDP C28 C23 C 0 1 N N N 71.648 23.588 62.378 -1.224 -4.574 -0.014 C28 JDP 28 JDP C29 C24 C 0 1 Y N N 71.235 24.994 62.096 -0.969 -3.090 -0.007 C29 JDP 29 JDP N30 N4 N 0 1 Y N N 70.907 25.236 60.842 0.281 -2.643 -0.012 N30 JDP 30 JDP N31 N5 N 0 1 N N N 66.759 29.369 55.193 6.524 2.800 0.016 N31 JDP 31 JDP H1 H1 H 0 1 N N N 66.235 27.786 62.349 -5.870 3.758 -2.127 H1 JDP 32 JDP H2 H2 H 0 1 N N N 65.388 30.098 62.703 -6.903 4.423 0.008 H2 JDP 33 JDP H3 H3 H 0 1 N N N 66.285 29.568 57.601 4.202 3.757 0.020 H3 JDP 34 JDP H4 H4 H 0 1 N N N 66.557 29.301 60.012 1.748 3.738 0.023 H4 JDP 35 JDP H5 H5 H 0 1 N N N 68.425 28.007 60.972 0.512 1.620 0.013 H5 JDP 36 JDP H6 H6 H 0 1 N N N 70.341 26.796 55.978 5.096 -1.383 -0.026 H6 JDP 37 JDP H7 H7 H 0 1 N N N 72.953 26.215 57.927 2.897 -3.621 0.982 H7 JDP 38 JDP H8 H8 H 0 1 N N N 72.122 24.874 58.785 2.005 -3.576 -0.558 H8 JDP 39 JDP H9 H9 H 0 1 N N N 72.022 24.993 56.996 3.784 -3.635 -0.562 H9 JDP 40 JDP H10 H10 H 0 1 N N N 71.754 28.440 63.740 -3.644 -0.160 0.000 H10 JDP 41 JDP H11 H11 H 0 1 N N N 70.002 27.690 65.358 -1.803 1.789 0.889 H11 JDP 42 JDP H12 H12 H 0 1 N N N 70.597 29.384 65.320 -1.805 1.791 -0.891 H12 JDP 43 JDP H13 H13 H 0 1 N N N 68.960 31.049 64.941 -3.783 2.440 2.135 H13 JDP 44 JDP H14 H14 H 0 1 N N N 66.757 31.703 64.004 -5.860 3.763 2.138 H14 JDP 45 JDP H15 H15 H 0 1 N N N 68.414 27.129 63.280 -3.789 2.441 -2.130 H15 JDP 46 JDP H16 H16 H 0 1 N N N 71.987 26.567 64.996 -3.858 -2.489 1.001 H16 JDP 47 JDP H17 H17 H 0 1 N N N 70.714 25.303 65.087 -4.009 -2.027 -0.708 H17 JDP 48 JDP H18 H18 H 0 1 N N N 71.679 22.780 64.375 -2.791 -4.634 1.466 H18 JDP 49 JDP H19 H19 H 0 1 N N N 73.293 22.922 63.599 -2.915 -5.895 0.214 H19 JDP 50 JDP H20 H20 H 0 1 N N N 70.755 22.947 62.349 -0.544 -5.062 0.685 H20 JDP 51 JDP H21 H21 H 0 1 N N N 72.356 23.267 61.600 -1.055 -4.966 -1.017 H21 JDP 52 JDP H22 H22 H 0 1 N N N 66.554 29.468 54.219 7.494 2.806 0.015 H22 JDP 53 JDP H23 H23 H 0 1 N N N 66.208 29.854 55.872 6.033 3.636 0.026 H23 JDP 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JDP O01 C02 DOUB N N 1 JDP N31 C02 SING N N 2 JDP C02 C03 SING N N 3 JDP C09 C08 SING Y N 4 JDP C09 C10 DOUB Y N 5 JDP C03 C08 DOUB Y N 6 JDP C03 C04 SING Y N 7 JDP C08 C07 SING Y N 8 JDP C11 C10 SING N N 9 JDP C04 C05 DOUB Y N 10 JDP C10 N12 SING Y N 11 JDP C07 N12 SING Y N 12 JDP C07 C06 DOUB Y N 13 JDP N12 C13 SING N N 14 JDP C05 C06 SING Y N 15 JDP C13 N30 DOUB Y N 16 JDP C13 N14 SING Y N 17 JDP N30 C29 SING Y N 18 JDP N14 C15 DOUB Y N 19 JDP C29 C28 SING N N 20 JDP C29 C24 DOUB Y N 21 JDP C28 C27 SING N N 22 JDP C15 C24 SING Y N 23 JDP C15 N16 SING N N 24 JDP C22 C21 DOUB Y N 25 JDP C22 C23 SING Y N 26 JDP C24 C25 SING N N 27 JDP C21 C20 SING Y N 28 JDP C23 C18 DOUB Y N 29 JDP N16 C17 SING N N 30 JDP C27 O26 SING N N 31 JDP C20 C19 DOUB Y N 32 JDP C18 C19 SING Y N 33 JDP C18 C17 SING N N 34 JDP C25 O26 SING N N 35 JDP C22 H1 SING N N 36 JDP C21 H2 SING N N 37 JDP C04 H3 SING N N 38 JDP C05 H4 SING N N 39 JDP C06 H5 SING N N 40 JDP C09 H6 SING N N 41 JDP C11 H7 SING N N 42 JDP C11 H8 SING N N 43 JDP C11 H9 SING N N 44 JDP N16 H10 SING N N 45 JDP C17 H11 SING N N 46 JDP C17 H12 SING N N 47 JDP C19 H13 SING N N 48 JDP C20 H14 SING N N 49 JDP C23 H15 SING N N 50 JDP C25 H16 SING N N 51 JDP C25 H17 SING N N 52 JDP C27 H18 SING N N 53 JDP C27 H19 SING N N 54 JDP C28 H20 SING N N 55 JDP C28 H21 SING N N 56 JDP N31 H22 SING N N 57 JDP N31 H23 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JDP SMILES ACDLabs 12.01 "c5cccc(CNc3nc(n2c1cccc(C(=O)N)c1cc2C)nc4c3COCC4)c5" JDP InChI InChI 1.03 "InChI=1S/C24H23N5O2/c1-15-12-18-17(22(25)30)8-5-9-21(18)29(15)24-27-20-10-11-31-14-19(20)23(28-24)26-13-16-6-3-2-4-7-16/h2-9,12H,10-11,13-14H2,1H3,(H2,25,30)(H,26,27,28)" JDP InChIKey InChI 1.03 RDALZZCKQFLGJP-UHFFFAOYSA-N JDP SMILES_CANONICAL CACTVS 3.385 "Cc1cc2c(cccc2C(N)=O)n1c3nc4CCOCc4c(NCc5ccccc5)n3" JDP SMILES CACTVS 3.385 "Cc1cc2c(cccc2C(N)=O)n1c3nc4CCOCc4c(NCc5ccccc5)n3" JDP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cccc2n1c3nc4c(c(n3)NCc5ccccc5)COCC4)C(=O)N" JDP SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cccc2n1c3nc4c(c(n3)NCc5ccccc5)COCC4)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JDP "SYSTEMATIC NAME" ACDLabs 12.01 "1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide" JDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-methyl-1-[4-[(phenylmethyl)amino]-7,8-dihydro-5~{H}-pyrano[4,3-d]pyrimidin-2-yl]indole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JDP "Create component" 2018-09-04 RCSB JDP "Initial release" 2019-01-23 RCSB #