data_JDR # _chem_comp.id JDR _chem_comp.name "4-({[6-chloro-5-formyl-2-(methylsulfanyl)pyrimidin-4-yl]amino}methyl)benzenesulfonamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 Cl N4 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-{[N-(6-chloro-5-formyl-2-methylthiopyrimidin-4-yl)amino]methyl}benzenesulfonamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-03-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.850 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JDR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3M5E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JDR N1 N1 N 0 1 Y N N -4.006 10.307 12.094 -4.609 -0.191 -0.000 N1 JDR 1 JDR C2 C2 C 0 1 Y N N -3.177 9.650 12.899 -3.838 -1.273 -0.001 C2 JDR 2 JDR N3 N3 N 0 1 Y N N -3.326 8.353 13.165 -2.514 -1.195 -0.001 N3 JDR 3 JDR C4 C4 C 0 1 Y N N -4.337 7.676 12.618 -1.902 -0.017 -0.001 C4 JDR 4 JDR C5 C5 C 0 1 Y N N -5.232 8.324 11.767 -2.688 1.160 -0.001 C5 JDR 5 JDR C6 C6 C 0 1 Y N N -5.028 9.681 11.521 -4.086 1.021 -0.000 C6 JDR 6 JDR N7 N7 N 0 1 N N N -4.510 6.278 12.909 -0.526 0.058 -0.001 N7 JDR 7 JDR C8 C8 C 0 1 Y N N -4.389 4.474 14.588 1.739 -0.813 -0.000 C8 JDR 8 JDR C9 C9 C 0 1 Y N N -5.757 4.459 14.881 2.410 -0.650 1.197 C9 JDR 9 JDR C10 C10 C 0 1 Y N N -6.296 3.364 15.567 3.755 -0.329 1.197 C10 JDR 10 JDR C11 C11 C 0 1 Y N N -5.453 2.306 15.946 4.428 -0.172 0.000 C11 JDR 11 JDR C12 C12 C 0 1 Y N N -4.100 2.340 15.641 3.757 -0.336 -1.197 C12 JDR 12 JDR C13 C13 C 0 1 Y N N -3.568 3.428 14.965 2.412 -0.656 -1.197 C13 JDR 13 JDR S14 S14 S 0 1 N N N -6.051 0.911 16.802 6.142 0.238 0.001 S14 JDR 14 JDR O15 O15 O 0 1 N N N -5.534 0.972 18.217 6.406 0.857 -1.251 O15 JDR 15 JDR O16 O16 O 0 1 N N N -7.565 0.900 16.632 6.404 0.864 1.248 O16 JDR 16 JDR N17 N17 N 0 1 N N N -5.395 -0.493 16.057 6.987 -1.187 0.006 N17 JDR 17 JDR C18 C18 C 0 1 N N N -6.367 7.606 11.138 -2.063 2.481 -0.000 C18 JDR 18 JDR O19 O19 O 0 1 N N N -6.844 6.603 11.674 -2.754 3.479 -0.000 O19 JDR 19 JDR CL20 CL20 CL 0 0 N N N -6.085 10.581 10.491 -5.110 2.423 0.000 CL20 JDR 20 JDR S21 S21 S 0 1 N N N -1.834 10.486 13.672 -4.598 -2.862 -0.001 S21 JDR 21 JDR C22 C22 C 0 1 N N N -1.102 9.484 15.008 -6.342 -2.376 0.000 C22 JDR 22 JDR C23 C23 C 0 1 N N N -3.683 5.573 13.865 0.274 -1.169 -0.000 C23 JDR 23 JDR HN7 HN7 H 0 1 N N N -5.444 6.194 13.255 -0.088 0.923 -0.001 HN7 JDR 24 JDR H9 H9 H 0 1 N N N -6.389 5.282 14.582 1.884 -0.773 2.132 H9 JDR 25 JDR H10 H10 H 0 1 N N N -7.350 3.333 15.803 4.279 -0.201 2.133 H10 JDR 26 JDR H12 H12 H 0 1 N N N -3.461 1.519 15.930 4.283 -0.213 -2.132 H12 JDR 27 JDR H13 H13 H 0 1 N N N -2.514 3.458 14.733 1.888 -0.784 -2.133 H13 JDR 28 JDR HN17 HN17 H 0 0 N N N -5.725 -1.308 16.533 7.860 -1.234 -0.413 HN17 JDR 29 JDR HN1A HN1A H 0 0 N N N -5.681 -0.527 15.100 6.608 -1.974 0.428 HN1A JDR 30 JDR H18 H18 H 0 1 N N N -6.778 7.963 10.205 -0.987 2.570 -0.000 H18 JDR 31 JDR H22 H22 H 0 1 N N N -0.269 10.036 15.467 -6.968 -3.269 0.000 H22 JDR 32 JDR H22A H22A H 0 0 N N N -1.867 9.275 15.770 -6.554 -1.784 0.891 H22A JDR 33 JDR H22B H22B H 0 0 N N N -0.729 8.536 14.593 -6.555 -1.784 -0.890 H22B JDR 34 JDR H23 H23 H 0 1 N N N -2.836 5.131 13.320 0.043 -1.754 0.890 H23 JDR 35 JDR H23A H23A H 0 0 N N N -3.333 6.300 14.612 0.043 -1.754 -0.890 H23A JDR 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JDR N1 C2 DOUB Y N 1 JDR N1 C6 SING Y N 2 JDR C2 N3 SING Y N 3 JDR C2 S21 SING N N 4 JDR N3 C4 DOUB Y N 5 JDR C4 C5 SING Y N 6 JDR C4 N7 SING N N 7 JDR C5 C6 DOUB Y N 8 JDR C5 C18 SING N N 9 JDR C6 CL20 SING N N 10 JDR N7 C23 SING N N 11 JDR C8 C9 DOUB Y N 12 JDR C8 C13 SING Y N 13 JDR C8 C23 SING N N 14 JDR C9 C10 SING Y N 15 JDR C10 C11 DOUB Y N 16 JDR C11 C12 SING Y N 17 JDR C11 S14 SING N N 18 JDR C12 C13 DOUB Y N 19 JDR S14 O15 DOUB N N 20 JDR S14 O16 DOUB N N 21 JDR S14 N17 SING N N 22 JDR C18 O19 DOUB N N 23 JDR S21 C22 SING N N 24 JDR N7 HN7 SING N N 25 JDR C9 H9 SING N N 26 JDR C10 H10 SING N N 27 JDR C12 H12 SING N N 28 JDR C13 H13 SING N N 29 JDR N17 HN17 SING N N 30 JDR N17 HN1A SING N N 31 JDR C18 H18 SING N N 32 JDR C22 H22 SING N N 33 JDR C22 H22A SING N N 34 JDR C22 H22B SING N N 35 JDR C23 H23 SING N N 36 JDR C23 H23A SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JDR SMILES ACDLabs 12.01 "O=S(=O)(N)c1ccc(cc1)CNc2nc(SC)nc(Cl)c2C=O" JDR SMILES_CANONICAL CACTVS 3.370 "CSc1nc(Cl)c(C=O)c(NCc2ccc(cc2)[S](N)(=O)=O)n1" JDR SMILES CACTVS 3.370 "CSc1nc(Cl)c(C=O)c(NCc2ccc(cc2)[S](N)(=O)=O)n1" JDR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CSc1nc(c(c(n1)Cl)C=O)NCc2ccc(cc2)S(=O)(=O)N" JDR SMILES "OpenEye OEToolkits" 1.7.0 "CSc1nc(c(c(n1)Cl)C=O)NCc2ccc(cc2)S(=O)(=O)N" JDR InChI InChI 1.03 "InChI=1S/C13H13ClN4O3S2/c1-22-13-17-11(14)10(7-19)12(18-13)16-6-8-2-4-9(5-3-8)23(15,20)21/h2-5,7H,6H2,1H3,(H2,15,20,21)(H,16,17,18)" JDR InChIKey InChI 1.03 NPWLBLGDDVPXFE-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JDR "SYSTEMATIC NAME" ACDLabs 12.01 "4-({[6-chloro-5-formyl-2-(methylsulfanyl)pyrimidin-4-yl]amino}methyl)benzenesulfonamide" JDR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "4-[[(6-chloro-5-methanoyl-2-methylsulfanyl-pyrimidin-4-yl)amino]methyl]benzenesulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JDR "Create component" 2010-03-29 PDBJ JDR "Modify aromatic_flag" 2011-06-04 RCSB JDR "Modify descriptor" 2011-06-04 RCSB JDR "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JDR _pdbx_chem_comp_synonyms.name "4-{[N-(6-chloro-5-formyl-2-methylthiopyrimidin-4-yl)amino]methyl}benzenesulfonamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##