data_JEI # _chem_comp.id JEI _chem_comp.name "(3-{(2S,4R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-[(2-phosphonoethoxy)methyl]pyrrolidin-1-yl}-3-oxopropyl)phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H24 N6 O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-07 _chem_comp.pdbx_modified_date 2024-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 494.333 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JEI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TPV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JEI C10 C1 C 0 1 N N R N N N -16.286 -38.673 -44.506 2.186 1.231 -1.350 C10 JEI 1 JEI C15 C2 C 0 1 Y N N N N N -15.348 -35.153 -44.455 4.812 0.847 1.144 C15 JEI 2 JEI C22 C3 C 0 1 N N N N N N -17.024 -38.838 -43.468 1.170 2.381 -1.122 C22 JEI 3 JEI C24 C4 C 0 1 N N N N N N -17.673 -41.257 -42.892 -1.317 2.222 -0.773 C24 JEI 4 JEI C26 C5 C 0 1 N N N N N N -20.026 -40.827 -43.014 -3.661 2.100 -0.288 C26 JEI 5 JEI C05 C6 C 0 1 N N N N N N -13.962 -43.747 -41.637 -1.477 -3.006 0.329 C05 JEI 6 JEI C06 C7 C 0 1 N N N N N N -15.147 -42.841 -42.000 -0.449 -2.145 -0.408 C06 JEI 7 JEI C07 C8 C 0 1 N N N N N N -14.640 -41.821 -43.019 -0.657 -0.696 -0.047 C07 JEI 8 JEI C09 C9 C 0 1 N N N N N N -14.969 -39.529 -44.278 1.243 0.014 -1.527 C09 JEI 9 JEI C12 C10 C 0 1 Y N N N N N -17.017 -36.313 -45.151 2.645 0.871 1.107 C12 JEI 10 JEI C14 C11 C 0 1 Y N N N N N -15.090 -36.464 -44.162 4.422 1.046 -0.186 C14 JEI 11 JEI C16 C12 C 0 1 N N N N N N -14.331 -34.112 -44.052 6.193 0.792 1.443 C16 JEI 12 JEI C18 C13 C 0 1 N N N N N N -12.879 -35.896 -43.102 6.634 1.125 -0.846 C18 JEI 13 JEI C23 C14 C 0 1 N N S N N N -16.544 -40.247 -42.754 0.046 1.696 -0.317 C23 JEI 14 JEI C27 C15 C 0 1 N N N N N N -20.652 -39.503 -43.409 -4.672 1.450 0.659 C27 JEI 15 JEI N08 N1 N 0 1 N N N N N N -15.401 -40.627 -43.316 0.138 0.252 -0.581 N08 JEI 16 JEI N11 N2 N 0 1 Y N N N N N -16.118 -37.157 -44.607 3.054 1.057 -0.182 N11 JEI 17 JEI N13 N3 N 0 1 Y N N N N N -16.541 -35.080 -45.059 3.681 0.753 1.885 N13 JEI 18 JEI N17 N4 N 0 1 N N N N N N -13.133 -34.512 -43.391 7.076 0.934 0.429 N17 JEI 19 JEI N19 N5 N 0 1 N N N N N N -11.683 -36.346 -42.443 7.553 1.265 -1.855 N19 JEI 20 JEI N20 N6 N 0 1 N N N N N N -13.852 -36.879 -43.473 5.354 1.178 -1.137 N20 JEI 21 JEI O01 O1 O 0 1 N N N N N N -13.703 -42.557 -39.138 -1.273 -4.912 -1.579 O01 JEI 22 JEI O03 O2 O 0 1 N N N N N N -12.044 -41.912 -40.867 0.209 -5.246 0.437 O03 JEI 23 JEI O04 O3 O 0 1 N N N N N N -11.940 -44.148 -39.814 -2.385 -5.650 0.563 O04 JEI 24 JEI O21 O4 O 0 1 N N N N N N -14.548 -32.971 -44.291 6.578 0.621 2.587 O21 JEI 25 JEI O25 O5 O 0 1 N N N N N N -18.763 -40.795 -43.639 -2.342 1.670 0.055 O25 JEI 26 JEI O29 O6 O 0 1 N N N N N N -22.857 -40.936 -44.489 -6.612 1.709 -1.207 O29 JEI 27 JEI O30 O7 O 0 1 N N N N N N -23.170 -38.745 -43.273 -7.428 1.216 1.130 O30 JEI 28 JEI O31 O8 O 0 1 N N N N N N -22.193 -38.853 -45.557 -6.486 3.583 0.479 O31 JEI 29 JEI O32 O9 O 0 1 N N N N N N -13.618 -41.997 -43.597 -1.540 -0.384 0.724 O32 JEI 30 JEI P02 P1 P 0 1 N N N N N N -12.870 -43.050 -40.303 -1.225 -4.758 -0.107 P02 JEI 31 JEI P28 P2 P 0 1 N N N N N N -22.319 -39.550 -44.228 -6.354 1.999 0.221 P28 JEI 32 JEI H101 H1 H 0 0 N N N N N N -16.770 -39.035 -45.425 2.775 1.403 -2.250 H101 JEI 33 JEI H222 H2 H 0 0 N N N N N N -16.890 -37.997 -42.772 1.622 3.187 -0.544 H222 JEI 34 JEI H221 H3 H 0 0 N N N N N N -18.082 -38.905 -43.763 0.792 2.756 -2.074 H221 JEI 35 JEI H241 H4 H 0 0 N N N N N N -17.274 -42.157 -43.383 -1.331 3.309 -0.693 H241 JEI 36 JEI H242 H5 H 0 0 N N N N N N -18.030 -41.517 -41.884 -1.490 1.931 -1.809 H242 JEI 37 JEI H262 H6 H 0 0 N N N N N N -20.626 -41.671 -43.384 -3.883 1.807 -1.314 H262 JEI 38 JEI H261 H7 H 0 0 N N N N N N -19.922 -40.902 -41.922 -3.724 3.185 -0.198 H261 JEI 39 JEI H051 H8 H 0 0 N N N N N N -13.353 -43.900 -42.540 -1.353 -2.878 1.405 H051 JEI 40 JEI H052 H9 H 0 0 N N N N N N -14.357 -44.714 -41.293 -2.482 -2.701 0.040 H052 JEI 41 JEI H061 H10 H 0 0 N N N N N N -15.959 -43.440 -42.438 0.556 -2.450 -0.118 H061 JEI 42 JEI H062 H11 H 0 0 N N N N N N -15.516 -42.325 -41.101 -0.572 -2.272 -1.483 H062 JEI 43 JEI H091 H12 H 0 0 N N N N N N -14.174 -38.912 -43.834 0.866 -0.028 -2.548 H091 JEI 44 JEI H092 H13 H 0 0 N N N N N N -14.613 -39.958 -45.226 1.765 -0.910 -1.276 H092 JEI 45 JEI H121 H14 H 0 0 N N N N N N -17.964 -36.594 -45.588 1.616 0.832 1.433 H121 JEI 46 JEI H231 H15 H 0 0 N N N N N N -16.405 -40.030 -41.685 0.181 1.890 0.747 H231 JEI 47 JEI H271 H16 H 0 0 N N N N N N -20.752 -38.900 -42.494 -4.609 0.366 0.570 H271 JEI 48 JEI H272 H17 H 0 0 N N N N N N -19.959 -39.005 -44.103 -4.449 1.744 1.685 H272 JEI 49 JEI H171 H18 H 0 0 N N N N N N -12.461 -33.821 -43.125 8.028 0.900 0.610 H171 JEI 50 JEI H192 H19 H 0 0 N N N N N N -11.551 -37.320 -42.257 8.502 1.228 -1.656 H192 JEI 51 JEI H191 H20 H 0 0 N N N N N N -10.983 -35.685 -42.171 7.254 1.402 -2.768 H191 JEI 52 JEI H1 H21 H 0 1 N N N N N N -12.218 -41.119 -40.373 0.312 -5.174 1.396 H1 JEI 53 JEI H2 H22 H 0 1 N N N N N N -12.079 -44.291 -38.885 -2.314 -6.596 0.373 H2 JEI 54 JEI H3 H23 H 0 1 N N N N N N -23.915 -39.266 -42.996 -8.346 1.459 0.951 H3 JEI 55 JEI H4 H24 H 0 1 N N N N N N -22.478 -39.437 -46.250 -6.330 3.847 1.396 H4 JEI 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JEI P02 O01 DOUB N N 1 JEI O03 P02 SING N N 2 JEI O04 P02 SING N N 3 JEI C05 P02 SING N N 4 JEI C06 C05 SING N N 5 JEI C07 C06 SING N N 6 JEI C09 N08 SING N N 7 JEI C10 C09 SING N N 8 JEI N13 C12 DOUB Y N 9 JEI C12 N11 SING Y N 10 JEI C14 N11 SING Y N 11 JEI C15 C14 DOUB Y N 12 JEI C16 C15 SING N N 13 JEI C18 N17 SING N N 14 JEI N19 C18 SING N N 15 JEI N20 C18 DOUB N N 16 JEI N17 C16 SING N N 17 JEI O21 C16 DOUB N N 18 JEI N11 C10 SING N N 19 JEI C22 C10 SING N N 20 JEI C23 C22 SING N N 21 JEI C24 C23 SING N N 22 JEI O25 C24 SING N N 23 JEI C26 O25 SING N N 24 JEI C27 C26 SING N N 25 JEI P28 C27 SING N N 26 JEI O29 P28 DOUB N N 27 JEI O30 P28 SING N N 28 JEI O31 P28 SING N N 29 JEI N08 C07 SING N N 30 JEI O32 C07 DOUB N N 31 JEI N08 C23 SING N N 32 JEI N13 C15 SING Y N 33 JEI C14 N20 SING N N 34 JEI C10 H101 SING N N 35 JEI C22 H222 SING N N 36 JEI C22 H221 SING N N 37 JEI C24 H241 SING N N 38 JEI C24 H242 SING N N 39 JEI C26 H262 SING N N 40 JEI C26 H261 SING N N 41 JEI C05 H051 SING N N 42 JEI C05 H052 SING N N 43 JEI C06 H061 SING N N 44 JEI C06 H062 SING N N 45 JEI C09 H091 SING N N 46 JEI C09 H092 SING N N 47 JEI C12 H121 SING N N 48 JEI C23 H231 SING N N 49 JEI C27 H271 SING N N 50 JEI C27 H272 SING N N 51 JEI N17 H171 SING N N 52 JEI N19 H192 SING N N 53 JEI N19 H191 SING N N 54 JEI O03 H1 SING N N 55 JEI O04 H2 SING N N 56 JEI O30 H3 SING N N 57 JEI O31 H4 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JEI SMILES ACDLabs 12.01 "O=C(CCP(=O)(O)O)N1CC(CC1COCCP(=O)(O)O)n1cnc2c1N=C(N)NC2=O" JEI InChI InChI 1.06 "InChI=1S/C15H24N6O9P2/c16-15-18-13-12(14(23)19-15)17-8-21(13)9-5-10(7-30-2-4-32(27,28)29)20(6-9)11(22)1-3-31(24,25)26/h8-10H,1-7H2,(H2,24,25,26)(H2,27,28,29)(H3,16,18,19,23)/t9-,10+/m1/s1" JEI InChIKey InChI 1.06 APDUDHYPFAMPGN-ZJUUUORDSA-N JEI SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3C[C@@H](COCC[P](O)(O)=O)N(C3)C(=O)CC[P](O)(O)=O" JEI SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](COCC[P](O)(O)=O)N(C3)C(=O)CC[P](O)(O)=O" JEI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@@H]3C[C@H](N(C3)C(=O)CCP(=O)(O)O)COCCP(=O)(O)O)N=C(NC2=O)N" JEI SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(N(C3)C(=O)CCP(=O)(O)O)COCCP(=O)(O)O)N=C(NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JEI "SYSTEMATIC NAME" ACDLabs 12.01 "(3-{(2S,4R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-[(2-phosphonoethoxy)methyl]pyrrolidin-1-yl}-3-oxopropyl)phosphonic acid" JEI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[3-[(2~{S},4~{R})-4-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-2-(2-phosphonoethoxymethyl)pyrrolidin-1-yl]-3-oxidanylidene-propyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JEI "Create component" 2023-08-07 RCSB JEI "Initial release" 2024-05-08 RCSB #