data_JEM # _chem_comp.id JEM _chem_comp.name "7-O-phosphono-D-glycero-D-gluco-heptonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H15 O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-09-05 _chem_comp.pdbx_modified_date 2026-10-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 306.161 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JEM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6MDG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_comp_type ? _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JEM O6 O1 O 0 1 N N N N N N -40.037 -12.735 -2.804 0.838 1.705 0.069 O6 JEM 1 JEM C6 C1 C 0 1 N N R N N N -39.425 -11.969 -1.827 0.900 0.331 0.456 C6 JEM 2 JEM C5 C2 C 0 1 N N R N N N -40.119 -10.773 -1.699 -0.356 -0.394 -0.034 C5 JEM 3 JEM C7 C3 C 0 1 N N N N N N -39.384 -12.758 -0.594 2.138 -0.319 -0.165 C7 JEM 4 JEM C4 C4 C 0 1 N N R N N N -39.536 -9.739 -0.865 -1.594 0.256 0.587 C4 JEM 5 JEM C2 C5 C 0 1 N N R N N N -39.570 -7.537 -0.188 -4.093 0.256 0.618 C2 JEM 6 JEM O11 O2 O 0 1 N N N N N N -41.509 -7.884 1.049 -6.036 0.245 -0.714 O11 JEM 7 JEM C1 C6 C 0 1 N N N N N N -40.435 -7.376 0.989 -5.327 -0.383 0.037 C1 JEM 8 JEM O1 O3 O 0 1 N N N N N N -40.077 -6.514 1.963 -5.639 -1.649 0.352 O1 JEM 9 JEM C3 C7 C 0 1 N N S N N N -40.074 -8.477 -1.121 -2.850 -0.468 0.097 C3 JEM 10 JEM O3 O4 O 0 1 N N N N N N -39.745 -8.073 -2.435 -2.867 -0.478 -1.331 O3 JEM 11 JEM O4 O5 O 0 1 N N N N N N -38.181 -9.585 -1.060 -1.656 1.630 0.201 O4 JEM 12 JEM O5 O6 O 0 1 N N N N N N -41.396 -11.051 -1.199 -0.294 -1.768 0.353 O5 JEM 13 JEM O7 O7 O 0 1 N N N N N N -38.408 -13.860 -0.653 3.315 0.281 0.381 O7 JEM 14 JEM P P1 P 0 1 N N N N N N -37.782 -14.562 0.665 4.803 -0.159 -0.048 P JEM 15 JEM O10 O8 O 0 1 N N N N N N -37.052 -13.552 1.402 4.963 -1.617 0.153 O10 JEM 16 JEM O9 O9 O 0 1 N N N N N N -38.993 -15.178 1.573 5.042 0.198 -1.599 O9 JEM 17 JEM O8 O10 O 0 1 N N N N N N -36.809 -15.713 0.243 5.877 0.628 0.857 O8 JEM 18 JEM O01 O11 O 0 1 N N N N N N -39.459 -6.655 -0.620 -4.040 1.631 0.230 O01 JEM 19 JEM H11 H1 H 0 1 N N N N N N -39.571 -13.557 -2.901 0.784 1.843 -0.886 H11 JEM 20 JEM H4 H2 H 0 1 N N N N N N -38.390 -11.755 -2.131 0.959 0.261 1.542 H4 JEM 21 JEM H3 H3 H 0 1 N N N N N N -40.240 -10.345 -2.705 -0.415 -0.324 -1.120 H3 JEM 22 JEM H12 H4 H 0 1 N N N N N N -39.113 -12.093 0.240 2.138 -1.386 0.056 H12 JEM 23 JEM H13 H5 H 0 1 N N N N N N -40.383 -13.183 -0.415 2.123 -0.171 -1.245 H13 JEM 24 JEM H2 H6 H 0 1 N N N N N N -39.723 -10.000 0.187 -1.535 0.186 1.673 H2 JEM 25 JEM H01 H7 H 0 1 N N N N N N -38.629 -7.960 0.194 -4.125 0.187 1.705 H01 JEM 26 JEM H5 H8 H 0 1 N N N N N N -40.784 -6.436 2.593 -6.441 -2.016 -0.046 H5 JEM 27 JEM H1 H9 H 0 1 N N N N N N -41.169 -8.524 -1.025 -2.845 -1.494 0.468 H1 JEM 28 JEM H8 H10 H 0 1 N N N N N N -40.113 -7.214 -2.604 -2.872 0.403 -1.730 H8 JEM 29 JEM H9 H11 H 0 1 N N N N N N -37.855 -8.898 -0.491 -1.710 1.768 -0.755 H9 JEM 30 JEM H10 H12 H 0 1 N N N N N N -41.883 -10.241 -1.106 -0.240 -1.906 1.308 H10 JEM 31 JEM H15 H13 H 0 1 N N N N N N -38.996 -14.757 2.425 4.953 1.139 -1.804 H15 JEM 32 JEM H14 H14 H 0 1 N N N N N N -35.933 -15.518 0.555 6.797 0.412 0.652 H14 JEM 33 JEM H011 H15 H 0 0 N N N N N N -40.212 -6.109 -0.425 -4.009 1.768 -0.726 H011 JEM 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JEM O6 C6 SING N N 1 JEM O3 C3 SING N N 2 JEM C6 C5 SING N N 3 JEM C6 C7 SING N N 4 JEM C5 O5 SING N N 5 JEM C5 C4 SING N N 6 JEM C3 C4 SING N N 7 JEM C3 C2 SING N N 8 JEM O4 C4 SING N N 9 JEM O7 C7 SING N N 10 JEM O7 P SING N N 11 JEM O01 C2 SING N N 12 JEM C2 C1 SING N N 13 JEM O8 P SING N N 14 JEM P O10 DOUB N N 15 JEM P O9 SING N N 16 JEM C1 O11 DOUB N N 17 JEM C1 O1 SING N N 18 JEM O6 H11 SING N N 19 JEM C6 H4 SING N N 20 JEM C5 H3 SING N N 21 JEM C7 H12 SING N N 22 JEM C7 H13 SING N N 23 JEM C4 H2 SING N N 24 JEM C2 H01 SING N N 25 JEM O1 H5 SING N N 26 JEM C3 H1 SING N N 27 JEM O3 H8 SING N N 28 JEM O4 H9 SING N N 29 JEM O5 H10 SING N N 30 JEM O9 H15 SING N N 31 JEM O8 H14 SING N N 32 JEM O01 H011 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JEM SMILES ACDLabs 12.01 "OC(C(O)C(C(C(C(=O)O)O)O)O)COP(=O)(O)O" JEM InChI InChI 1.03 "InChI=1S/C7H15O11P/c8-2(1-18-19(15,16)17)3(9)4(10)5(11)6(12)7(13)14/h2-6,8-12H,1H2,(H,13,14)(H2,15,16,17)/t2-,3-,4-,5+,6-/m1/s1" JEM InChIKey InChI 1.03 XGLOKNNTTZAQCG-DGPNFKTASA-N JEM SMILES_CANONICAL CACTVS 3.385 "O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H](O)[C@H](O)[C@@H](O)C(O)=O" JEM SMILES CACTVS 3.385 "O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH](O)[CH](O)C(O)=O" JEM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]([C@H]([C@H]([C@@H]([C@H](C(=O)O)O)O)O)O)O)OP(=O)(O)O" JEM SMILES "OpenEye OEToolkits" 2.0.6 "C(C(C(C(C(C(C(=O)O)O)O)O)O)O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JEM "SYSTEMATIC NAME" ACDLabs 12.01 "7-O-phosphono-D-glycero-D-gluco-heptonic acid" JEM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{S},4~{R},5~{R},6~{R})-2,3,4,5,6-pentakis(oxidanyl)-7-phosphonooxy-heptanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JEM "Create component" 2018-09-05 RCSB JEM "Other modification" 2018-09-05 RCSB JEM "Initial release" 2026-10-14 RCSB #