data_JG6 # _chem_comp.id JG6 _chem_comp.name "{3-[(2S,4R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-(hydroxymethyl)pyrrolidin-1-yl]-3-oxopropyl}phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N6 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-07 _chem_comp.pdbx_modified_date 2024-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.300 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JG6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TPY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JG6 C10 C1 C 0 1 N N R N N N -26.960 38.694 22.461 1.363 -1.406 1.148 C10 JG6 1 JG6 C15 C2 C 0 1 Y N N N N N -26.639 38.353 25.916 3.416 0.671 -1.027 C15 JG6 2 JG6 C22 C3 C 0 1 N N N N N N -28.326 38.700 21.745 1.148 -2.879 0.708 C22 JG6 3 JG6 C24 C4 C 0 1 N N N N N N -28.673 37.863 19.570 -1.010 -4.039 0.137 C24 JG6 4 JG6 C05 C5 C 0 1 N N N N N N -27.713 33.116 21.278 -3.975 0.371 -0.440 C05 JG6 5 JG6 C06 C6 C 0 1 N N N N N N -27.780 34.351 20.357 -2.664 0.107 0.302 C06 JG6 6 JG6 C07 C7 C 0 1 N N N N N N -26.739 35.348 20.995 -2.036 -1.158 -0.222 C07 JG6 7 JG6 C09 C8 C 0 1 N N N N N N -26.128 37.592 21.743 -0.095 -0.928 1.355 C09 JG6 8 JG6 C12 C9 C 0 1 Y N N N N N -28.041 37.693 24.426 1.615 -0.522 -1.203 C12 JG6 9 JG6 C14 C10 C 0 1 Y N N N N N -26.203 38.807 24.701 3.164 0.113 0.231 C14 JG6 10 JG6 C16 C11 C 0 1 N N N N N N -25.831 38.670 27.185 4.549 1.503 -1.184 C16 JG6 11 JG6 C18 C12 C 0 1 N N N N N N -24.184 39.908 25.794 5.040 1.149 1.092 C18 JG6 12 JG6 C23 C13 C 0 1 N N S N N N -28.424 37.555 21.043 -0.146 -2.804 -0.129 C23 JG6 13 JG6 N08 N1 N 0 1 N N N N N N -27.033 36.771 21.258 -0.865 -1.591 0.288 N08 JG6 14 JG6 N11 N2 N 0 1 Y N N N N N -27.071 38.398 23.797 2.025 -0.633 0.094 N11 JG6 15 JG6 N13 N3 N 0 1 Y N N N N N -27.774 37.673 25.718 2.437 0.242 -1.861 N13 JG6 16 JG6 N17 N4 N 0 1 N N N N N N -24.629 39.439 27.076 5.338 1.722 -0.109 N17 JG6 17 JG6 N19 N5 N 0 1 N N N N N N -22.940 40.702 25.696 5.860 1.389 2.166 N19 JG6 18 JG6 N20 N6 N 0 1 N N N N N N -24.950 39.609 24.583 3.991 0.375 1.250 N20 JG6 19 JG6 O01 O1 O 0 1 N N N N N N -30.468 33.197 21.917 -4.897 1.802 1.661 O01 JG6 20 JG6 O03 O2 O 0 1 N N N N N N -29.698 31.939 19.861 -3.787 3.156 -0.157 O03 JG6 21 JG6 O04 O3 O 0 1 N N N N N N -29.304 31.019 22.151 -6.176 2.111 -0.493 O04 JG6 22 JG6 O21 O4 O 0 1 N N N N N N -26.211 38.274 28.247 4.807 2.010 -2.262 O21 JG6 23 JG6 O25 O5 O 0 1 N N N N N N -27.598 37.539 18.729 -2.148 -4.019 -0.726 O25 JG6 24 JG6 O26 O6 O 0 1 N N N N N N -25.613 34.979 21.252 -2.583 -1.788 -1.102 O26 JG6 25 JG6 P02 P1 P 0 1 N N N N N N -29.386 32.268 21.322 -4.735 1.903 0.193 P02 JG6 26 JG6 H101 H1 H 0 0 N N N N N N -26.470 39.666 22.304 1.927 -1.355 2.080 H101 JG6 27 JG6 H222 H2 H 0 0 N N N N N N -29.137 38.756 22.486 1.983 -3.224 0.098 H222 JG6 28 JG6 H221 H3 H 0 0 N N N N N N -28.389 39.563 21.066 1.013 -3.524 1.576 H221 JG6 29 JG6 H241 H4 H 0 0 N N N N N N -29.554 37.292 19.241 -0.425 -4.939 -0.053 H241 JG6 30 JG6 H242 H5 H 0 0 N N N N N N -28.877 38.939 19.472 -1.341 -4.033 1.176 H242 JG6 31 JG6 H051 H6 H 0 0 N N N N N N -27.437 33.433 22.295 -3.774 0.479 -1.506 H051 JG6 32 JG6 H052 H7 H 0 0 N N N N N N -26.958 32.414 20.894 -4.657 -0.465 -0.282 H052 JG6 33 JG6 H061 H8 H 0 0 N N N N N N -27.493 34.089 19.328 -1.982 0.943 0.144 H061 JG6 34 JG6 H062 H9 H 0 0 N N N N N N -28.790 34.786 20.356 -2.865 -0.001 1.368 H062 JG6 35 JG6 H091 H10 H 0 0 N N N N N N -25.471 37.072 22.456 -0.461 -1.237 2.335 H091 JG6 36 JG6 H092 H11 H 0 0 N N N N N N -25.521 38.026 20.935 -0.158 0.156 1.251 H092 JG6 37 JG6 H121 H12 H 0 0 N N N N N N -28.890 37.226 23.950 0.741 -0.999 -1.621 H121 JG6 38 JG6 H231 H13 H 0 0 N N N N N N -29.236 36.916 21.419 0.101 -2.746 -1.189 H231 JG6 39 JG6 H171 H14 H 0 0 N N N N N N -24.097 39.651 27.896 6.121 2.288 -0.192 H171 JG6 40 JG6 H192 H15 H 0 0 N N N N N N -22.626 41.032 24.806 6.638 1.959 2.064 H192 JG6 41 JG6 H191 H16 H 0 0 N N N N N N -22.413 40.909 26.520 5.661 0.989 3.027 H191 JG6 42 JG6 H1 H17 H 0 1 N N N N N N -30.502 32.374 19.603 -3.637 3.283 -1.104 H1 JG6 43 JG6 H2 H18 H 0 1 N N N N N N -29.933 31.068 22.861 -6.639 2.908 -0.201 H2 JG6 44 JG6 H251 H19 H 0 0 N N N N N N -27.821 37.756 17.831 -2.741 -4.774 -0.612 H251 JG6 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JG6 P02 O01 DOUB N N 1 JG6 O03 P02 SING N N 2 JG6 O04 P02 SING N N 3 JG6 C05 P02 SING N N 4 JG6 C06 C05 SING N N 5 JG6 C07 C06 SING N N 6 JG6 C09 N08 SING N N 7 JG6 C10 C09 SING N N 8 JG6 N13 C12 DOUB Y N 9 JG6 C12 N11 SING Y N 10 JG6 C14 N11 SING Y N 11 JG6 C15 C14 DOUB Y N 12 JG6 C16 C15 SING N N 13 JG6 C18 N17 SING N N 14 JG6 N19 C18 SING N N 15 JG6 N20 C18 DOUB N N 16 JG6 N17 C16 SING N N 17 JG6 O21 C16 DOUB N N 18 JG6 N11 C10 SING N N 19 JG6 C22 C10 SING N N 20 JG6 C23 C22 SING N N 21 JG6 C24 C23 SING N N 22 JG6 O25 C24 SING N N 23 JG6 N08 C07 SING N N 24 JG6 O26 C07 DOUB N N 25 JG6 N08 C23 SING N N 26 JG6 N13 C15 SING Y N 27 JG6 C14 N20 SING N N 28 JG6 C10 H101 SING N N 29 JG6 C22 H222 SING N N 30 JG6 C22 H221 SING N N 31 JG6 C24 H241 SING N N 32 JG6 C24 H242 SING N N 33 JG6 C05 H051 SING N N 34 JG6 C05 H052 SING N N 35 JG6 C06 H061 SING N N 36 JG6 C06 H062 SING N N 37 JG6 C09 H091 SING N N 38 JG6 C09 H092 SING N N 39 JG6 C12 H121 SING N N 40 JG6 C23 H231 SING N N 41 JG6 N17 H171 SING N N 42 JG6 N19 H192 SING N N 43 JG6 N19 H191 SING N N 44 JG6 O03 H1 SING N N 45 JG6 O04 H2 SING N N 46 JG6 O25 H251 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JG6 SMILES ACDLabs 12.01 "O=C(CCP(=O)(O)O)N1CC(CC1CO)n1cnc2c1N=C(N)NC2=O" JG6 InChI InChI 1.06 "InChI=1S/C13H19N6O6P/c14-13-16-11-10(12(22)17-13)15-6-19(11)7-3-8(5-20)18(4-7)9(21)1-2-26(23,24)25/h6-8,20H,1-5H2,(H2,23,24,25)(H3,14,16,17,22)/t7-,8+/m1/s1" JG6 InChIKey InChI 1.06 BDQWSUFOTXTHGI-SFYZADRCSA-N JG6 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3C[C@@H](CO)N(C3)C(=O)CC[P](O)(O)=O" JG6 SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](CO)N(C3)C(=O)CC[P](O)(O)=O" JG6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1[C@@H]3C[C@H](N(C3)C(=O)CCP(=O)(O)O)CO)N=C(NC2=O)N" JG6 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(n1C3CC(N(C3)C(=O)CCP(=O)(O)O)CO)N=C(NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JG6 "SYSTEMATIC NAME" ACDLabs 12.01 "{3-[(2S,4R)-4-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-(hydroxymethyl)pyrrolidin-1-yl]-3-oxopropyl}phosphonic acid" JG6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[3-[(2~{S},4~{R})-4-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-2-(hydroxymethyl)pyrrolidin-1-yl]-3-oxidanylidene-propyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JG6 "Create component" 2023-08-07 RCSB JG6 "Initial release" 2024-05-08 RCSB #