data_JHF # _chem_comp.id JHF _chem_comp.name "(6S)-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(3R)-1-methylsulfonylpyrrolidin-3-yl]benzimidazol-2-yl]-1-(3-fluoranyl-4-methoxy-phenyl)piperidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H32 F N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-21 _chem_comp.pdbx_modified_date 2022-07-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 581.658 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JHF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XHE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JHF CBJ C1 C 0 1 N N N 8.260 -8.517 -8.328 4.683 3.000 -3.353 CBJ JHF 1 JHF OBI O1 O 0 1 N N N 7.230 -7.524 -8.180 4.364 3.183 -1.972 OBI JHF 2 JHF CBE C2 C 0 1 Y N N 6.873 -6.879 -9.350 4.055 2.068 -1.257 CBE JHF 3 JHF CBF C3 C 0 1 Y N N 5.924 -5.879 -9.182 3.735 2.174 0.091 CBF JHF 4 JHF FBH F1 F 0 1 N N N 5.531 -5.540 -7.933 3.730 3.384 0.691 FBH JHF 5 JHF CBG C4 C 0 1 Y N N 5.504 -5.163 -10.312 3.421 1.040 0.817 CBG JHF 6 JHF CBD C5 C 0 1 Y N N 7.312 -7.231 -10.660 4.055 0.827 -1.875 CBD JHF 7 JHF CBC C6 C 0 1 Y N N 6.878 -6.496 -11.768 3.735 -0.306 -1.151 CBC JHF 8 JHF CBB C7 C 0 1 Y N N 5.961 -5.467 -11.605 3.426 -0.203 0.199 CBB JHF 9 JHF NBA N1 N 0 1 N N N 5.555 -4.709 -12.691 3.102 -1.352 0.933 NBA JHF 10 JHF CAZ C8 C 0 1 N N N 4.347 -4.995 -13.227 3.949 -1.745 1.885 CAZ JHF 11 JHF OBK O2 O 0 1 N N N 3.670 -5.852 -12.669 4.973 -1.113 2.038 OBK JHF 12 JHF CAY C9 C 0 1 N N N 3.846 -4.244 -14.341 3.703 -2.927 2.777 CAY JHF 13 JHF CAX C10 C 0 1 N N N 4.999 -3.927 -15.234 2.626 -3.826 2.165 CAX JHF 14 JHF CAW C11 C 0 1 N N N 6.003 -2.901 -14.594 1.434 -2.949 1.763 CAW JHF 15 JHF CAR C12 C 0 1 N N S 6.573 -3.705 -13.333 1.858 -2.039 0.612 CAR JHF 16 JHF CAO C13 C 0 1 Y N N 7.176 -2.788 -12.350 0.774 -1.025 0.353 CAO JHF 17 JHF NAP N2 N 0 1 Y N N 6.525 -1.828 -11.688 0.533 0.015 1.097 NAP JHF 18 JHF CAL C14 C 0 1 Y N N 7.416 -1.226 -10.845 -0.508 0.716 0.579 CAL JHF 19 JHF CAM C15 C 0 1 Y N N 7.288 -0.174 -9.967 -1.168 1.885 0.965 CAM JHF 20 JHF CAF C16 C 0 1 Y N N 8.329 0.311 -9.179 -2.225 2.356 0.201 CAF JHF 21 JHF CAA C17 C 0 1 Y N N 8.154 1.365 -8.286 -2.931 3.599 0.604 CAA JHF 22 JHF CAE C18 C 0 1 Y N N 7.532 2.548 -8.558 -3.673 3.821 1.729 CAE JHF 23 JHF CAG C19 C 0 1 N N N 6.907 3.004 -9.844 -3.949 2.839 2.839 CAG JHF 24 JHF OAD O3 O 0 1 Y N N 7.501 3.320 -7.496 -4.105 5.087 1.650 OAD JHF 25 JHF NAC N3 N 0 1 Y N N 8.212 2.540 -6.408 -3.721 5.631 0.641 NAC JHF 26 JHF CAB C20 C 0 1 Y N N 8.533 1.414 -6.970 -2.990 4.841 -0.088 CAB JHF 27 JHF CAH C21 C 0 1 N N N 9.270 0.414 -6.158 -2.337 5.173 -1.405 CAH JHF 28 JHF CAI C22 C 0 1 Y N N 9.581 -0.325 -9.329 -2.629 1.667 -0.946 CAI JHF 29 JHF CAJ C23 C 0 1 Y N N 9.680 -1.365 -10.273 -1.988 0.523 -1.328 CAJ JHF 30 JHF CAK C24 C 0 1 Y N N 8.627 -1.815 -10.986 -0.926 0.034 -0.577 CAK JHF 31 JHF NAN N4 N 0 1 Y N N 8.487 -2.793 -11.962 -0.092 -1.060 -0.696 NAN JHF 32 JHF CAQ C25 C 0 1 N N R 9.620 -3.718 -12.379 -0.133 -2.073 -1.754 CAQ JHF 33 JHF CAV C26 C 0 1 N N N 10.707 -2.939 -12.950 -0.712 -3.408 -1.222 CAV JHF 34 JHF CAS C27 C 0 1 N N N 10.143 -4.589 -11.231 -1.171 -1.696 -2.844 CAS JHF 35 JHF CAT C28 C 0 1 N N N 11.658 -4.620 -11.425 -2.502 -2.189 -2.239 CAT JHF 36 JHF NAU N5 N 0 1 N N N 11.870 -3.736 -12.572 -2.174 -3.221 -1.244 NAU JHF 37 JHF SBL S1 S 0 1 N N N 13.405 -2.956 -12.915 -3.266 -4.038 -0.305 SBL JHF 38 JHF OBM O4 O 0 1 N N N 14.379 -3.245 -11.816 -4.436 -4.109 -1.109 OBM JHF 39 JHF OBN O5 O 0 1 N N N 13.213 -1.516 -13.359 -2.577 -5.215 0.090 OBN JHF 40 JHF CBO C29 C 0 1 N N N 13.877 -3.927 -14.362 -3.539 -2.951 1.121 CBO JHF 41 JHF H1 H1 H 0 1 N N N 8.474 -8.972 -7.350 5.550 2.346 -3.442 H1 JHF 42 JHF H2 H2 H 0 1 N N N 7.921 -9.295 -9.028 3.834 2.549 -3.866 H2 JHF 43 JHF H3 H3 H 0 1 N N N 9.172 -8.043 -8.720 4.909 3.966 -3.805 H3 JHF 44 JHF H4 H4 H 0 1 N N N 4.805 -4.350 -10.184 3.173 1.122 1.865 H4 JHF 45 JHF H5 H5 H 0 1 N N N 7.981 -8.067 -10.797 4.304 0.745 -2.922 H5 JHF 46 JHF H6 H6 H 0 1 N N N 7.257 -6.730 -12.752 3.739 -1.273 -1.632 H6 JHF 47 JHF H7 H7 H 0 1 N N N 3.381 -3.313 -13.985 4.627 -3.495 2.889 H7 JHF 48 JHF H8 H8 H 0 1 N N N 3.101 -4.840 -14.889 3.371 -2.580 3.755 H8 JHF 49 JHF H9 H9 H 0 1 N N N 4.611 -3.501 -16.171 3.026 -4.327 1.284 H9 JHF 50 JHF H10 H10 H 0 1 N N N 5.541 -4.859 -15.452 2.305 -4.568 2.896 H10 JHF 51 JHF H11 H11 H 0 1 N N N 6.809 -2.643 -15.297 0.605 -3.581 1.445 H11 JHF 52 JHF H12 H12 H 0 1 N N N 5.485 -1.984 -14.278 1.126 -2.338 2.612 H12 JHF 53 JHF H13 H13 H 0 1 N N N 7.391 -4.325 -13.729 2.006 -2.640 -0.286 H13 JHF 54 JHF H14 H14 H 0 1 N N N 6.323 0.304 -9.884 -0.856 2.417 1.851 H14 JHF 55 JHF H15 H15 H 0 1 N N N 6.473 4.006 -9.707 -3.172 2.922 3.599 H15 JHF 56 JHF H16 H16 H 0 1 N N N 7.674 3.042 -10.631 -4.919 3.059 3.285 H16 JHF 57 JHF H17 H17 H 0 1 N N N 6.115 2.299 -10.137 -3.956 1.827 2.434 H17 JHF 58 JHF H18 H18 H 0 1 N N N 9.436 0.813 -5.146 -3.022 4.937 -2.220 H18 JHF 59 JHF H19 H19 H 0 1 N N N 8.681 -0.513 -6.094 -2.093 6.235 -1.432 H19 JHF 60 JHF H20 H20 H 0 1 N N N 10.240 0.200 -6.632 -1.424 4.588 -1.516 H20 JHF 61 JHF H21 H21 H 0 1 N N N 10.434 -0.024 -8.739 -3.453 2.042 -1.534 H21 JHF 62 JHF H22 H22 H 0 1 N N N 10.644 -1.824 -10.434 -2.307 -0.004 -2.216 H22 JHF 63 JHF H23 H23 H 0 1 N N N 9.230 -4.393 -13.155 0.855 -2.221 -2.189 H23 JHF 64 JHF H24 H24 H 0 1 N N N 10.752 -1.931 -12.512 -0.425 -4.232 -1.874 H24 JHF 65 JHF H25 H25 H 0 1 N N N 10.613 -2.860 -14.043 -0.369 -3.591 -0.204 H25 JHF 66 JHF H26 H26 H 0 1 N N N 9.886 -4.144 -10.258 -1.194 -0.617 -2.998 H26 JHF 67 JHF H27 H27 H 0 1 N N N 9.723 -5.604 -11.292 -0.953 -2.213 -3.778 H27 JHF 68 JHF H28 H28 H 0 1 N N N 12.006 -5.640 -11.644 -3.020 -1.360 -1.757 H28 JHF 69 JHF H29 H29 H 0 1 N N N 12.177 -4.239 -10.533 -3.131 -2.613 -3.023 H29 JHF 70 JHF H30 H30 H 0 1 N N N 14.023 -4.977 -14.068 -3.849 -1.965 0.773 H30 JHF 71 JHF H31 H31 H 0 1 N N N 13.082 -3.866 -15.120 -4.319 -3.373 1.756 H31 JHF 72 JHF H32 H32 H 0 1 N N N 14.814 -3.530 -14.780 -2.615 -2.861 1.692 H32 JHF 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JHF CAX CAW SING N N 1 JHF CAX CAY SING N N 2 JHF CAW CAR SING N N 3 JHF CBO SBL SING N N 4 JHF CAY CAZ SING N N 5 JHF OBN SBL DOUB N N 6 JHF CAR NBA SING N N 7 JHF CAR CAO SING N N 8 JHF CAZ NBA SING N N 9 JHF CAZ OBK DOUB N N 10 JHF CAV NAU SING N N 11 JHF CAV CAQ SING N N 12 JHF SBL NAU SING N N 13 JHF SBL OBM DOUB N N 14 JHF NBA CBB SING N N 15 JHF NAU CAT SING N N 16 JHF CAQ NAN SING N N 17 JHF CAQ CAS SING N N 18 JHF CAO NAN SING Y N 19 JHF CAO NAP DOUB Y N 20 JHF NAN CAK SING Y N 21 JHF CBC CBB DOUB Y N 22 JHF CBC CBD SING Y N 23 JHF NAP CAL SING Y N 24 JHF CBB CBG SING Y N 25 JHF CAT CAS SING N N 26 JHF CAK CAL DOUB Y N 27 JHF CAK CAJ SING Y N 28 JHF CAL CAM SING Y N 29 JHF CBD CBE DOUB Y N 30 JHF CBG CBF DOUB Y N 31 JHF CAJ CAI DOUB Y N 32 JHF CAM CAF DOUB Y N 33 JHF CAG CAE SING N N 34 JHF CBE CBF SING Y N 35 JHF CBE OBI SING N N 36 JHF CAI CAF SING Y N 37 JHF CBF FBH SING N N 38 JHF CAF CAA SING N N 39 JHF CAE CAA DOUB Y N 40 JHF CAE OAD SING Y N 41 JHF CBJ OBI SING N N 42 JHF CAA CAB SING Y N 43 JHF OAD NAC SING Y N 44 JHF CAB NAC DOUB Y N 45 JHF CAB CAH SING N N 46 JHF CBJ H1 SING N N 47 JHF CBJ H2 SING N N 48 JHF CBJ H3 SING N N 49 JHF CBG H4 SING N N 50 JHF CBD H5 SING N N 51 JHF CBC H6 SING N N 52 JHF CAY H7 SING N N 53 JHF CAY H8 SING N N 54 JHF CAX H9 SING N N 55 JHF CAX H10 SING N N 56 JHF CAW H11 SING N N 57 JHF CAW H12 SING N N 58 JHF CAR H13 SING N N 59 JHF CAM H14 SING N N 60 JHF CAG H15 SING N N 61 JHF CAG H16 SING N N 62 JHF CAG H17 SING N N 63 JHF CAH H18 SING N N 64 JHF CAH H19 SING N N 65 JHF CAH H20 SING N N 66 JHF CAI H21 SING N N 67 JHF CAJ H22 SING N N 68 JHF CAQ H23 SING N N 69 JHF CAV H24 SING N N 70 JHF CAV H25 SING N N 71 JHF CAS H26 SING N N 72 JHF CAS H27 SING N N 73 JHF CAT H28 SING N N 74 JHF CAT H29 SING N N 75 JHF CBO H30 SING N N 76 JHF CBO H31 SING N N 77 JHF CBO H32 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JHF InChI InChI 1.03 "InChI=1S/C29H32FN5O5S/c1-17-28(18(2)40-32-17)19-8-10-24-23(14-19)31-29(35(24)21-12-13-33(16-21)41(4,37)38)25-6-5-7-27(36)34(25)20-9-11-26(39-3)22(30)15-20/h8-11,14-15,21,25H,5-7,12-13,16H2,1-4H3/t21-,25+/m1/s1" JHF InChIKey InChI 1.03 IXWWSEVQKVTANB-BWKNWUBXSA-N JHF SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1F)N2[C@@H](CCCC2=O)c3nc4cc(ccc4n3[C@@H]5CCN(C5)[S](C)(=O)=O)c6c(C)onc6C" JHF SMILES CACTVS 3.385 "COc1ccc(cc1F)N2[CH](CCCC2=O)c3nc4cc(ccc4n3[CH]5CCN(C5)[S](C)(=O)=O)c6c(C)onc6C" JHF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3[C@@H]4CCN(C4)S(=O)(=O)C)[C@@H]5CCCC(=O)N5c6ccc(c(c6)F)OC" JHF SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(c(on1)C)c2ccc3c(c2)nc(n3C4CCN(C4)S(=O)(=O)C)C5CCCC(=O)N5c6ccc(c(c6)F)OC" # _pdbx_chem_comp_identifier.comp_id JHF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{S})-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(3~{R})-1-methylsulfonylpyrrolidin-3-yl]benzimidazol-2-yl]-1-(3-fluoranyl-4-methoxy-phenyl)piperidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JHF "Create component" 2022-04-21 PDBJ JHF "Initial release" 2022-07-27 RCSB #