data_JI4 # _chem_comp.id JI4 _chem_comp.name "N-{(3S,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 F N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N1-[(3' S,4' S)-4'-((6"-amino-4"-methylpyridin-2"-yl)methyl)pyrrolidin-3'-yl]-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-22 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.495 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JI4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3JWS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JI4 C1 C1 C 0 1 N N N 16.601 4.324 57.747 0.370 1.665 -0.784 C1 JI4 1 JI4 N1 N1 N 0 1 N N N 16.777 3.073 57.015 -0.935 1.132 -0.371 N1 JI4 2 JI4 C2 C2 C 0 1 N N N 17.766 5.279 57.491 1.485 0.802 -0.191 C2 JI4 3 JI4 N2 N2 N 0 1 N N N 17.941 5.626 56.087 2.790 1.335 -0.604 N2 JI4 4 JI4 C3 C3 C 0 1 N N N 18.516 6.927 55.764 3.887 0.530 -0.051 C3 JI4 5 JI4 C4 C4 C 0 1 N N N 18.848 7.032 54.287 5.227 1.115 -0.503 C4 JI4 6 JI4 "N1'" "N1'" N 0 1 N N N 16.528 -0.496 57.354 -3.618 3.527 -0.083 "N1'" JI4 7 JI4 C11 C11 C 0 1 Y N N 19.406 8.390 53.933 6.352 0.288 0.064 C11 JI4 8 JI4 C12 C12 C 0 1 Y N N 18.553 9.477 53.727 6.845 -0.789 -0.648 C12 JI4 9 JI4 C13 C13 C 0 1 Y N N 19.101 10.714 53.389 7.879 -1.548 -0.126 C13 JI4 10 JI4 F13 F13 F 0 1 N N N 18.299 11.773 53.197 8.362 -2.600 -0.822 F13 JI4 11 JI4 C14 C14 C 0 1 Y N N 20.485 10.870 53.250 8.418 -1.226 1.108 C14 JI4 12 JI4 C15 C15 C 0 1 Y N N 21.329 9.781 53.447 7.924 -0.149 1.818 C15 JI4 13 JI4 C16 C16 C 0 1 Y N N 20.787 8.539 53.788 6.895 0.611 1.294 C16 JI4 14 JI4 N11 N11 N 0 1 Y N N 12.646 -0.074 58.255 -5.519 -0.231 0.684 N11 JI4 15 JI4 "C2'" "C2'" C 0 1 N N N 17.073 0.659 56.679 -2.156 3.273 -0.158 "C2'" JI4 16 JI4 C21 C21 C 0 1 Y N N 13.149 1.120 58.648 -4.485 -0.834 0.128 C21 JI4 17 JI4 "C3'" "C3'" C 0 1 N N S 16.903 1.791 57.703 -2.032 1.938 -0.924 "C3'" JI4 18 JI4 C31 C31 C 0 1 Y N N 12.567 1.779 59.724 -4.593 -2.122 -0.356 C31 JI4 19 JI4 "C4'" "C4'" C 0 1 N N S 15.700 1.347 58.566 -3.383 1.225 -0.707 "C4'" JI4 20 JI4 C41 C41 C 0 1 Y N N 11.485 1.201 60.387 -5.807 -2.788 -0.253 C41 JI4 21 JI4 "C5'" "C5'" C 0 1 N N N 15.939 -0.170 58.640 -4.209 2.188 0.172 "C5'" JI4 22 JI4 C51 C51 C 0 1 Y N N 10.979 -0.038 59.975 -6.873 -2.131 0.336 C51 JI4 23 JI4 C61 C61 C 0 1 Y N N 11.582 -0.657 58.874 -6.693 -0.832 0.801 C61 JI4 24 JI4 N61 N61 N 0 1 N N N 11.145 -1.853 58.413 -7.755 -0.160 1.395 N61 JI4 25 JI4 C71 C71 C 0 1 N N N 14.358 1.718 57.924 -3.171 -0.106 0.019 C71 JI4 26 JI4 C81 C81 C 0 1 N N N 10.884 1.931 61.565 -5.961 -4.195 -0.771 C81 JI4 27 JI4 H1 H1 H 0 1 N N N 15.668 4.803 57.416 0.440 1.651 -1.872 H1 JI4 28 JI4 H1A H1A H 0 1 N N N 16.550 4.104 58.823 0.474 2.690 -0.427 H1A JI4 29 JI4 HN1 HN1 H 0 1 N N N 15.969 2.987 56.433 -1.030 0.163 -0.634 HN1 JI4 30 JI4 H2 H2 H 0 1 N N N 17.577 6.207 58.051 1.415 0.816 0.897 H2 JI4 31 JI4 H2A H2A H 0 1 N N N 18.689 4.793 57.840 1.381 -0.222 -0.548 H2A JI4 32 JI4 HN2 HN2 H 0 1 N N N 18.552 4.938 55.696 2.855 1.393 -1.609 HN2 JI4 33 JI4 H3 H3 H 0 1 N N N 17.789 7.711 56.022 3.833 0.542 1.037 H3 JI4 34 JI4 H3A H3A H 0 1 N N N 19.439 7.062 56.346 3.799 -0.496 -0.408 H3A JI4 35 JI4 H4 H4 H 0 1 N N N 19.598 6.267 54.039 5.280 1.102 -1.592 H4 JI4 36 JI4 H4A H4A H 0 1 N N N 17.929 6.866 53.706 5.314 2.141 -0.146 H4A JI4 37 JI4 "HN1'" "HN1'" H 0 0 N N N 15.818 -0.894 56.774 -3.835 4.168 0.666 "HN1'" JI4 38 JI4 H12 H12 H 0 1 N N N 17.484 9.361 53.828 6.423 -1.039 -1.610 H12 JI4 39 JI4 H14 H14 H 0 1 N N N 20.897 11.834 52.990 9.225 -1.818 1.515 H14 JI4 40 JI4 H15 H15 H 0 1 N N N 22.397 9.895 53.337 8.344 0.102 2.781 H15 JI4 41 JI4 H16 H16 H 0 1 N N N 21.438 7.691 53.940 6.509 1.453 1.850 H16 JI4 42 JI4 "H2'" "H2'" H 0 1 N N N 18.131 0.510 56.416 -1.658 4.073 -0.706 "H2'" JI4 43 JI4 "H2'A" "H2'A" H 0 0 N N N 16.529 0.874 55.747 -1.735 3.177 0.843 "H2'A" JI4 44 JI4 "H3'" "H3'" H 0 1 N N N 17.765 1.958 58.366 -1.867 2.124 -1.985 "H3'" JI4 45 JI4 H31 H31 H 0 1 N N N 12.951 2.736 60.046 -3.742 -2.607 -0.811 H31 JI4 46 JI4 "H4'" "H4'" H 0 1 N N N 15.638 1.832 59.551 -3.882 1.061 -1.662 "H4'" JI4 47 JI4 "H5'" "H5'" H 0 1 N N N 14.998 -0.716 58.799 -4.109 1.923 1.224 "H5'" JI4 48 JI4 "H5'A" "H5'A" H 0 0 N N N 16.616 -0.429 59.467 -5.257 2.172 -0.128 "H5'A" JI4 49 JI4 H51 H51 H 0 1 N N N 10.150 -0.501 60.490 -7.831 -2.619 0.432 H51 JI4 50 JI4 HN61 HN61 H 0 0 N N N 11.710 -2.139 57.639 -7.635 0.745 1.721 HN61 JI4 51 JI4 HN6A HN6A H 0 0 N N N 11.209 -2.535 59.142 -8.617 -0.597 1.483 HN6A JI4 52 JI4 H71 H71 H 0 1 N N N 14.358 1.343 56.890 -2.776 0.083 1.017 H71 JI4 53 JI4 H71A H71A H 0 0 N N N 14.261 2.814 57.942 -2.463 -0.716 -0.542 H71A JI4 54 JI4 H81 H81 H 0 1 N N N 10.080 2.595 61.214 -5.718 -4.902 0.022 H81 JI4 55 JI4 H81A H81A H 0 0 N N N 10.471 1.201 62.277 -6.989 -4.352 -1.096 H81A JI4 56 JI4 H81B H81B H 0 0 N N N 11.663 2.528 62.062 -5.286 -4.347 -1.613 H81B JI4 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JI4 N1 C1 SING N N 1 JI4 C2 C1 SING N N 2 JI4 C1 H1 SING N N 3 JI4 C1 H1A SING N N 4 JI4 N1 "C3'" SING N N 5 JI4 N1 HN1 SING N N 6 JI4 N2 C2 SING N N 7 JI4 C2 H2 SING N N 8 JI4 C2 H2A SING N N 9 JI4 C3 N2 SING N N 10 JI4 N2 HN2 SING N N 11 JI4 C4 C3 SING N N 12 JI4 C3 H3 SING N N 13 JI4 C3 H3A SING N N 14 JI4 C11 C4 SING N N 15 JI4 C4 H4 SING N N 16 JI4 C4 H4A SING N N 17 JI4 "C2'" "N1'" SING N N 18 JI4 "N1'" "C5'" SING N N 19 JI4 "N1'" "HN1'" SING N N 20 JI4 C12 C11 DOUB Y N 21 JI4 C16 C11 SING Y N 22 JI4 C13 C12 SING Y N 23 JI4 C12 H12 SING N N 24 JI4 F13 C13 SING N N 25 JI4 C14 C13 DOUB Y N 26 JI4 C14 C15 SING Y N 27 JI4 C14 H14 SING N N 28 JI4 C15 C16 DOUB Y N 29 JI4 C15 H15 SING N N 30 JI4 C16 H16 SING N N 31 JI4 N11 C21 DOUB Y N 32 JI4 N11 C61 SING Y N 33 JI4 "C2'" "C3'" SING N N 34 JI4 "C2'" "H2'" SING N N 35 JI4 "C2'" "H2'A" SING N N 36 JI4 C71 C21 SING N N 37 JI4 C21 C31 SING Y N 38 JI4 "C3'" "C4'" SING N N 39 JI4 "C3'" "H3'" SING N N 40 JI4 C31 C41 DOUB Y N 41 JI4 C31 H31 SING N N 42 JI4 C71 "C4'" SING N N 43 JI4 "C4'" "C5'" SING N N 44 JI4 "C4'" "H4'" SING N N 45 JI4 C51 C41 SING Y N 46 JI4 C41 C81 SING N N 47 JI4 "C5'" "H5'" SING N N 48 JI4 "C5'" "H5'A" SING N N 49 JI4 C61 C51 DOUB Y N 50 JI4 C51 H51 SING N N 51 JI4 N61 C61 SING N N 52 JI4 N61 HN61 SING N N 53 JI4 N61 HN6A SING N N 54 JI4 C71 H71 SING N N 55 JI4 C71 H71A SING N N 56 JI4 C81 H81 SING N N 57 JI4 C81 H81A SING N N 58 JI4 C81 H81B SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JI4 SMILES ACDLabs 11.02 "Fc1cccc(c1)CCNCCNC2C(CNC2)Cc3nc(N)cc(c3)C" JI4 SMILES_CANONICAL CACTVS 3.352 "Cc1cc(N)nc(C[C@H]2CNC[C@H]2NCCNCCc3cccc(F)c3)c1" JI4 SMILES CACTVS 3.352 "Cc1cc(N)nc(C[CH]2CNC[CH]2NCCNCCc3cccc(F)c3)c1" JI4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)C[C@H]2CNC[C@H]2NCCNCCc3cccc(c3)F" JI4 SMILES "OpenEye OEToolkits" 1.7.0 "Cc1cc(nc(c1)N)CC2CNCC2NCCNCCc3cccc(c3)F" JI4 InChI InChI 1.03 "InChI=1S/C21H30FN5/c1-15-9-19(27-21(23)10-15)12-17-13-25-14-20(17)26-8-7-24-6-5-16-3-2-4-18(22)11-16/h2-4,9-11,17,20,24-26H,5-8,12-14H2,1H3,(H2,23,27)/t17-,20+/m0/s1" JI4 InChIKey InChI 1.03 PUOKPLCASUFBAN-FXAWDEMLSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JI4 "SYSTEMATIC NAME" ACDLabs 11.02 "N-{(3S,4S)-4-[(6-amino-4-methylpyridin-2-yl)methyl]pyrrolidin-3-yl}-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" JI4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "N-[(3S,4S)-4-[(6-azanyl-4-methyl-pyridin-2-yl)methyl]pyrrolidin-3-yl]-N'-[2-(3-fluorophenyl)ethyl]ethane-1,2-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JI4 "Create component" 2009-09-22 RCSB JI4 "Modify aromatic_flag" 2011-06-04 RCSB JI4 "Modify descriptor" 2011-06-04 RCSB JI4 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JI4 _pdbx_chem_comp_synonyms.name ;N1-[(3' S,4' S)-4'-((6"-amino-4"-methylpyridin-2"-yl)methyl)pyrrolidin-3'-yl]-N2-(3'-fluorophenethyl)ethane-1,2-diamine tetrahydrochloride ; _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##