data_JIT # _chem_comp.id JIT _chem_comp.name "beta-D-manno-configured cyclophellitol aziridine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H13 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-28 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JIT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OP6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JIT C1 C1 C 0 1 N N R -20.067 58.011 49.208 1.314 -1.514 0.588 C1 JIT 1 JIT C2 C2 C 0 1 N N R -19.495 57.227 47.999 1.939 -0.155 0.309 C2 JIT 2 JIT C3 C3 C 0 1 N N S -19.890 57.836 46.631 0.969 0.983 0.549 C3 JIT 3 JIT C4 C4 C 0 1 N N R -19.841 59.385 46.646 -0.390 0.736 -0.068 C4 JIT 4 JIT C5 C5 C 0 1 N N R -19.165 59.891 47.943 -1.096 -0.465 0.524 C5 JIT 5 JIT C6 C6 C 0 1 N N N -18.702 61.347 47.993 -2.299 -0.814 -0.354 C6 JIT 6 JIT C7 C7 C 0 1 N N R -20.048 59.538 49.138 -0.196 -1.684 0.602 C7 JIT 7 JIT N8 N1 N 0 1 N N N -21.324 58.774 48.999 0.574 -2.132 -0.530 N8 JIT 8 JIT O2 O1 O 0 1 N N N -19.896 55.868 48.122 2.373 -0.115 -1.051 O2 JIT 9 JIT O3 O2 O 0 1 N N N -21.196 57.394 46.199 1.517 2.180 -0.006 O3 JIT 10 JIT O4 O3 O 0 1 N N N -19.163 59.862 45.465 -1.204 1.894 0.133 O4 JIT 11 JIT O6 O4 O 0 1 N N N -19.721 62.246 48.447 -3.249 0.253 -0.307 O6 JIT 12 JIT H1 H1 H 0 1 N N N -19.906 57.561 50.199 1.898 -2.176 1.227 H1 JIT 13 JIT H2 H2 H 0 1 N N N -18.399 57.278 48.071 2.804 -0.023 0.960 H2 JIT 14 JIT H3 H3 H 0 1 N N N -19.146 57.495 45.896 0.848 1.120 1.624 H3 JIT 15 JIT H4 H4 H 0 1 N N N -20.877 59.754 46.641 -0.266 0.579 -1.139 H4 JIT 16 JIT H5 H5 H 0 1 N N N -18.254 59.285 48.056 -1.452 -0.208 1.522 H5 JIT 17 JIT H6 H6 H 0 1 N N N -17.843 61.418 48.676 -1.968 -0.960 -1.383 H6 JIT 18 JIT H7 H7 H 0 1 N N N -18.392 61.651 46.982 -2.763 -1.730 0.011 H7 JIT 19 JIT H8 H8 H 0 1 N N N -19.872 60.085 50.076 -0.565 -2.481 1.248 H8 JIT 20 JIT H9 H9 H 0 1 N N N -22.007 58.813 49.728 0.673 -3.136 -0.526 H9 JIT 21 JIT H11 H11 H 0 1 N N N -19.635 55.536 48.973 2.784 0.722 -1.309 H11 JIT 22 JIT H12 H12 H 0 1 N N N -21.223 56.444 46.191 0.979 2.968 0.150 H12 JIT 23 JIT H13 H13 H 0 1 N N N -19.135 60.811 45.477 -0.846 2.700 -0.263 H13 JIT 24 JIT H14 H14 H 0 1 N N N -19.380 63.133 48.458 -4.039 0.100 -0.842 H14 JIT 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JIT O4 C4 SING N N 1 JIT O3 C3 SING N N 2 JIT C3 C4 SING N N 3 JIT C3 C2 SING N N 4 JIT C4 C5 SING N N 5 JIT C5 C6 SING N N 6 JIT C5 C7 SING N N 7 JIT C6 O6 SING N N 8 JIT C2 O2 SING N N 9 JIT C2 C1 SING N N 10 JIT N8 C7 SING N N 11 JIT N8 C1 SING N N 12 JIT C7 C1 SING N N 13 JIT C1 H1 SING N N 14 JIT C2 H2 SING N N 15 JIT C3 H3 SING N N 16 JIT C4 H4 SING N N 17 JIT C5 H5 SING N N 18 JIT C6 H6 SING N N 19 JIT C6 H7 SING N N 20 JIT C7 H8 SING N N 21 JIT N8 H9 SING N N 22 JIT O2 H11 SING N N 23 JIT O3 H12 SING N N 24 JIT O4 H13 SING N N 25 JIT O6 H14 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JIT InChI InChI 1.06 "InChI=1S/C7H13NO4/c9-1-2-3-4(8-3)6(11)7(12)5(2)10/h2-12H,1H2/t2-,3+,4+,5+,6+,7-/m0/s1" JIT InChIKey InChI 1.06 GPIFFOGPRPKRHS-IVZITJRKSA-N JIT SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@H](O)[C@@H]2N[C@H]12" JIT SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH]2N[CH]12" JIT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]2[C@@H](N2)[C@H]([C@H]([C@@H]1O)O)O)O" JIT SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C2C(N2)C(C(C1O)O)O)O" # _pdbx_chem_comp_identifier.comp_id JIT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{R},3~{S},4~{R},5~{R},6~{R})-5-(hydroxymethyl)-7-azabicyclo[4.1.0]heptane-2,3,4-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JIT "Create component" 2022-04-28 PDBE JIT "Initial release" 2022-05-18 RCSB JIT "Modify descriptor" 2022-08-22 RCSB #