data_JJX # _chem_comp.id JJX _chem_comp.name "(4R)-4-(4-cyanophenyl)-6-methyl-2-oxidanylidene-3-[2-oxidanylidene-2-(4-propan-2-ylpiperazin-1-yl)ethyl]-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidine-5-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H29 F3 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-04-17 _chem_comp.pdbx_modified_date 2015-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 550.575 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JJX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5A0B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JJX C33 C33 C 0 1 N N N -5.614 -1.869 26.052 -3.369 -2.716 1.954 C33 JJX 1 JJX C34 C34 C 0 1 N N N -5.762 -0.878 27.220 -3.725 -4.034 1.258 C34 JJX 2 JJX N35 N35 N 0 1 N N N -4.755 0.192 27.019 -4.817 -3.801 0.303 N35 JJX 3 JJX C38 C38 C 0 1 N N N -4.593 0.942 28.319 -5.303 -5.067 -0.260 C38 JJX 4 JJX C40 C40 C 0 1 N N N -5.756 1.906 28.660 -6.517 -4.797 -1.151 C40 JJX 5 JJX C39 C39 C 0 1 N N N -3.249 1.682 28.335 -4.194 -5.715 -1.091 C39 JJX 6 JJX C36 C36 C 0 1 N N N -5.069 0.973 25.766 -4.405 -2.875 -0.761 C36 JJX 7 JJX C37 C37 C 0 1 N N N -4.964 0.022 24.511 -4.078 -1.510 -0.148 C37 JJX 8 JJX N31 N31 N 0 1 N N N -5.802 -1.182 24.731 -3.089 -1.704 0.924 N31 JJX 9 JJX C30 C30 C 0 1 N N N -6.707 -1.630 23.831 -1.957 -0.974 0.961 C30 JJX 10 JJX O32 O32 O 0 1 N N N -6.823 -1.003 22.767 -1.153 -1.147 1.852 O32 JJX 11 JJX C29 C29 C 0 1 N N N -7.604 -2.909 24.109 -1.690 0.057 -0.105 C29 JJX 12 JJX N12 N12 N 0 1 N N N -8.553 -3.032 22.960 -0.405 0.710 0.158 N12 JJX 13 JJX C11 C11 C 0 1 N N N -8.333 -4.066 22.032 0.738 0.216 -0.359 C11 JJX 14 JJX O21 O21 O 0 1 N N N -7.410 -4.850 22.269 0.687 -0.783 -1.049 O21 JJX 15 JJX C7 C7 C 0 1 N N R -9.686 -2.106 22.844 -0.332 1.924 0.988 C7 JJX 16 JJX C3 C3 C 0 1 Y N N -10.650 -2.611 23.986 -1.206 2.974 0.352 C3 JJX 17 JJX C2 C2 C 0 1 Y N N -11.236 -1.693 24.870 -1.986 3.795 1.148 C2 JJX 18 JJX C1 C1 C 0 1 Y N N -12.049 -2.105 25.954 -2.789 4.758 0.572 C1 JJX 19 JJX C6 C6 C 0 1 Y N N -12.292 -3.454 26.148 -2.813 4.904 -0.816 C6 JJX 20 JJX C19 C19 C 0 1 N N N -13.119 -3.840 27.250 -3.643 5.902 -1.420 C19 JJX 21 JJX N20 N20 N 0 1 N N N -13.775 -4.154 28.124 -4.302 6.693 -1.900 N20 JJX 22 JJX C5 C5 C 0 1 Y N N -11.743 -4.417 25.266 -2.023 4.072 -1.613 C5 JJX 23 JJX C4 C4 C 0 1 Y N N -10.923 -3.978 24.208 -1.221 3.116 -1.024 C4 JJX 24 JJX C8 C8 C 0 1 N N N -10.344 -2.144 21.493 1.041 2.528 1.204 C8 JJX 25 JJX C27 C27 C 0 1 N N N -11.370 -1.191 21.242 1.213 3.708 1.997 C27 JJX 26 JJX N28 N28 N 0 1 N N N -12.202 -0.433 21.031 1.349 4.645 2.625 N28 JJX 27 JJX C9 C9 C 0 1 N N N -10.111 -3.221 20.631 2.094 1.917 0.627 C9 JJX 28 JJX C22 C22 C 0 1 N N N -10.907 -3.330 19.343 3.477 2.485 0.817 C22 JJX 29 JJX N10 N10 N 0 1 N N N -9.084 -4.171 20.887 1.927 0.790 -0.137 N10 JJX 30 JJX C13 C13 C 0 1 Y N N -8.926 -5.290 20.028 3.062 0.207 -0.714 C13 JJX 31 JJX C18 C18 C 0 1 Y N N -9.714 -6.440 20.320 3.762 -0.779 -0.031 C18 JJX 32 JJX C14 C14 C 0 1 Y N N -8.068 -5.308 18.928 3.486 0.610 -1.974 C14 JJX 33 JJX C15 C15 C 0 1 Y N N -8.002 -6.481 18.140 4.606 0.033 -2.541 C15 JJX 34 JJX C16 C16 C 0 1 Y N N -8.764 -7.607 18.460 5.303 -0.945 -1.856 C16 JJX 35 JJX C17 C17 C 0 1 Y N N -9.643 -7.598 19.527 4.880 -1.352 -0.604 C17 JJX 36 JJX C23 C23 C 0 1 N N N -10.419 -8.906 19.871 5.641 -2.421 0.137 C23 JJX 37 JJX F25 F25 F 0 1 N N N -10.701 -9.629 18.759 5.117 -3.677 -0.190 F25 JJX 38 JJX F26 F26 F 0 1 N N N -11.484 -8.654 20.646 6.991 -2.370 -0.226 F26 JJX 39 JJX F24 F24 F 0 1 N N N -9.613 -9.618 20.642 5.520 -2.210 1.515 F24 JJX 40 JJX H331 H331 H 0 0 N N N -4.609 -2.315 26.085 -4.207 -2.389 2.570 H331 JJX 41 JJX H332 H332 H 0 0 N N N -6.370 -2.661 26.155 -2.487 -2.857 2.578 H332 JJX 42 JJX H341 H341 H 0 0 N N N -6.774 -0.447 27.222 -2.851 -4.411 0.726 H341 JJX 43 JJX H342 H342 H 0 0 N N N -5.580 -1.392 28.175 -4.042 -4.764 2.002 H342 JJX 44 JJX H38 H38 H 0 1 N N N -4.556 0.193 29.124 -5.589 -5.738 0.550 H38 JJX 45 JJX H361 H361 H 0 0 N N N -6.089 1.379 25.833 -3.522 -3.269 -1.265 H361 JJX 46 JJX H362 H362 H 0 0 N N N -4.351 1.800 25.660 -5.216 -2.766 -1.481 H362 JJX 47 JJX H401 H401 H 0 0 N N N -5.551 2.404 29.619 -6.878 -5.736 -1.568 H401 JJX 48 JJX H402 H402 H 0 0 N N N -5.850 2.662 27.867 -7.307 -4.335 -0.558 H402 JJX 49 JJX H403 H403 H 0 0 N N N -6.694 1.336 28.737 -6.231 -4.125 -1.961 H403 JJX 50 JJX H391 H391 H 0 0 N N N -3.140 2.225 29.285 -3.330 -5.908 -0.456 H391 JJX 51 JJX H392 H392 H 0 0 N N N -2.429 0.956 28.232 -4.556 -6.655 -1.509 H392 JJX 52 JJX H393 H393 H 0 0 N N N -3.214 2.396 27.499 -3.908 -5.044 -1.901 H393 JJX 53 JJX H371 H371 H 0 0 N N N -5.317 0.556 23.616 -3.663 -0.854 -0.914 H371 JJX 54 JJX H372 H372 H 0 0 N N N -3.916 -0.282 24.368 -4.984 -1.067 0.266 H372 JJX 55 JJX H291 H291 H 0 0 N N N -6.972 -3.807 24.176 -1.658 -0.428 -1.080 H291 JJX 56 JJX H292 H292 H 0 0 N N N -8.162 -2.783 25.049 -2.484 0.803 -0.096 H292 JJX 57 JJX H7 H7 H 0 1 N N N -9.367 -1.079 23.076 -0.752 1.688 1.965 H7 JJX 58 JJX H2 H2 H 0 1 N N N -11.062 -0.638 24.719 -1.966 3.681 2.221 H2 JJX 59 JJX H4 H4 H 0 1 N N N -10.489 -4.712 23.545 -0.607 2.475 -1.639 H4 JJX 60 JJX H1 H1 H 0 1 N N N -12.476 -1.373 26.624 -3.397 5.398 1.194 H1 JJX 61 JJX H5 H5 H 0 1 N N N -11.949 -5.468 25.402 -2.037 4.180 -2.688 H5 JJX 62 JJX H221 H221 H 0 0 N N N -10.595 -4.231 18.794 3.433 3.322 1.515 H221 JJX 63 JJX H222 H222 H 0 0 N N N -11.979 -3.398 19.579 4.135 1.713 1.217 H222 JJX 64 JJX H223 H223 H 0 0 N N N -10.724 -2.440 18.723 3.863 2.831 -0.142 H223 JJX 65 JJX H18 H18 H 0 1 N N N -10.381 -6.422 21.169 3.432 -1.097 0.947 H18 JJX 66 JJX H14 H14 H 0 1 N N N -7.467 -4.445 18.683 2.941 1.373 -2.509 H14 JJX 67 JJX H15 H15 H 0 1 N N N -7.352 -6.506 17.278 4.936 0.346 -3.520 H15 JJX 68 JJX H16 H16 H 0 1 N N N -8.665 -8.501 17.863 6.178 -1.395 -2.302 H16 JJX 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JJX C33 C34 SING N N 1 JJX C33 N31 SING N N 2 JJX C34 N35 SING N N 3 JJX N35 C38 SING N N 4 JJX N35 C36 SING N N 5 JJX C38 C40 SING N N 6 JJX C38 C39 SING N N 7 JJX C36 C37 SING N N 8 JJX C37 N31 SING N N 9 JJX N31 C30 SING N N 10 JJX C30 O32 DOUB N N 11 JJX C30 C29 SING N N 12 JJX C29 N12 SING N N 13 JJX N12 C11 SING N N 14 JJX N12 C7 SING N N 15 JJX C11 O21 DOUB N N 16 JJX C11 N10 SING N N 17 JJX C7 C3 SING N N 18 JJX C7 C8 SING N N 19 JJX C3 C2 SING Y N 20 JJX C3 C4 DOUB Y N 21 JJX C2 C1 DOUB Y N 22 JJX C1 C6 SING Y N 23 JJX C6 C19 SING N N 24 JJX C6 C5 DOUB Y N 25 JJX C19 N20 TRIP N N 26 JJX C5 C4 SING Y N 27 JJX C8 C27 SING N N 28 JJX C8 C9 DOUB N N 29 JJX C27 N28 TRIP N N 30 JJX C9 C22 SING N N 31 JJX C9 N10 SING N N 32 JJX N10 C13 SING N N 33 JJX C13 C18 SING Y N 34 JJX C13 C14 DOUB Y N 35 JJX C18 C17 DOUB Y N 36 JJX C14 C15 SING Y N 37 JJX C15 C16 DOUB Y N 38 JJX C16 C17 SING Y N 39 JJX C17 C23 SING N N 40 JJX C23 F25 SING N N 41 JJX C23 F26 SING N N 42 JJX C23 F24 SING N N 43 JJX C33 H331 SING N N 44 JJX C33 H332 SING N N 45 JJX C34 H341 SING N N 46 JJX C34 H342 SING N N 47 JJX C38 H38 SING N N 48 JJX C36 H361 SING N N 49 JJX C36 H362 SING N N 50 JJX C40 H401 SING N N 51 JJX C40 H402 SING N N 52 JJX C40 H403 SING N N 53 JJX C39 H391 SING N N 54 JJX C39 H392 SING N N 55 JJX C39 H393 SING N N 56 JJX C37 H371 SING N N 57 JJX C37 H372 SING N N 58 JJX C29 H291 SING N N 59 JJX C29 H292 SING N N 60 JJX C7 H7 SING N N 61 JJX C2 H2 SING N N 62 JJX C4 H4 SING N N 63 JJX C1 H1 SING N N 64 JJX C5 H5 SING N N 65 JJX C22 H221 SING N N 66 JJX C22 H222 SING N N 67 JJX C22 H223 SING N N 68 JJX C18 H18 SING N N 69 JJX C14 H14 SING N N 70 JJX C15 H15 SING N N 71 JJX C16 H16 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JJX InChI InChI 1.03 "InChI=1S/C29H29F3N6O2/c1-19(2)35-11-13-36(14-12-35)26(39)18-37-27(22-9-7-21(16-33)8-10-22)25(17-34)20(3)38(28(37)40)24-6-4-5-23(15-24)29(30,31)32/h4-10,15,19,27H,11-14,18H2,1-3H3/t27-/m1/s1" JJX InChIKey InChI 1.03 MJSBQGLWAKMDDF-HHHXNRCGSA-N JJX SMILES_CANONICAL CACTVS 3.385 "CC(C)N1CCN(CC1)C(=O)CN2[C@H](c3ccc(cc3)C#N)C(=C(C)N(C2=O)c4cccc(c4)C(F)(F)F)C#N" JJX SMILES CACTVS 3.385 "CC(C)N1CCN(CC1)C(=O)CN2[CH](c3ccc(cc3)C#N)C(=C(C)N(C2=O)c4cccc(c4)C(F)(F)F)C#N" JJX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=C([C@H](N(C(=O)N1c2cccc(c2)C(F)(F)F)CC(=O)N3CCN(CC3)C(C)C)c4ccc(cc4)C#N)C#N" JJX SMILES "OpenEye OEToolkits" 1.7.6 "CC1=C(C(N(C(=O)N1c2cccc(c2)C(F)(F)F)CC(=O)N3CCN(CC3)C(C)C)c4ccc(cc4)C#N)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JJX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4R)-4-(4-cyanophenyl)-6-methyl-2-oxidanylidene-3-[2-oxidanylidene-2-(4-propan-2-ylpiperazin-1-yl)ethyl]-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidine-5-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JJX "Create component" 2015-04-17 EBI JJX "Initial release" 2015-08-19 RCSB #