data_JKC # _chem_comp.id JKC _chem_comp.name "(2S)-2-azanyl-5-(phenylmethoxycarbonylamino)pentanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H18 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-18 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.293 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JKC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Y4K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JKC C7 C1 C 0 1 Y N N 9.700 5.520 -0.290 -5.233 -0.534 1.083 C7 JKC 1 JKC C6 C2 C 0 1 Y N N 10.400 6.540 0.390 -6.391 0.124 1.455 C6 JKC 2 JKC C5 C3 C 0 1 Y N N 11.810 6.540 0.400 -6.960 1.055 0.606 C5 JKC 3 JKC C4 C4 C 0 1 Y N N 12.540 5.540 -0.280 -6.371 1.329 -0.614 C4 JKC 4 JKC C3 C5 C 0 1 Y N N 11.850 4.520 -0.970 -5.214 0.671 -0.986 C3 JKC 5 JKC C2 C6 C 0 1 Y N N 10.430 4.520 -0.970 -4.641 -0.256 -0.135 C2 JKC 6 JKC C1 C7 C 0 1 N N N 9.740 3.520 -1.680 -3.379 -0.973 -0.541 C1 JKC 7 JKC O2 O1 O 0 1 N N N 9.690 2.290 -0.940 -2.226 -0.212 -0.094 O2 JKC 8 JKC CZ C8 C 0 1 N N N 8.590 2.050 -0.150 -1.012 -0.720 -0.379 CZ JKC 9 JKC O1 O2 O 0 1 N N N 7.760 2.930 0.100 -0.919 -1.769 -0.984 O1 JKC 10 JKC NE N1 N 0 1 N N N 8.440 0.820 0.370 0.100 -0.063 0.007 NE JKC 11 JKC CD C9 C 0 1 N N N 7.320 0.430 1.260 1.421 -0.615 -0.303 CD JKC 12 JKC CG C10 C 0 1 N N N 6.410 -0.610 0.600 2.505 0.318 0.242 CG JKC 13 JKC CB C11 C 0 1 N N N 5.700 -0.010 -0.620 3.885 -0.259 -0.082 CB JKC 14 JKC CA C12 C 0 1 N N S 4.630 -0.930 -1.240 4.968 0.674 0.463 CA JKC 15 JKC C C13 C 0 1 N N N 5.310 -2.150 -1.880 6.322 0.048 0.254 C JKC 16 JKC O O3 O 0 1 N N N 5.750 -2.000 -3.030 7.013 0.399 -0.674 O JKC 17 JKC OXT O4 O 0 1 N Y N 5.490 -3.150 -1.150 6.761 -0.899 1.097 OXT JKC 18 JKC N N2 N 0 1 N N N 3.550 -1.370 -0.340 4.908 1.960 -0.245 N JKC 19 JKC H1 H1 H 0 1 N N N 8.620 5.504 -0.290 -4.789 -1.261 1.746 H1 JKC 20 JKC H2 H2 H 0 1 N N N 9.856 7.320 0.902 -6.851 -0.090 2.408 H2 JKC 21 JKC H3 H3 H 0 1 N N N 12.339 7.315 0.935 -7.864 1.569 0.896 H3 JKC 22 JKC H4 H4 H 0 1 N N N 13.620 5.556 -0.272 -6.816 2.056 -1.278 H4 JKC 23 JKC H5 H5 H 0 1 N N N 12.396 3.748 -1.492 -4.751 0.888 -1.938 H5 JKC 24 JKC H6 H6 H 0 1 N N N 8.713 3.863 -1.874 -3.361 -1.962 -0.084 H6 JKC 25 JKC H7 H7 H 0 1 N N N 10.253 3.341 -2.636 -3.351 -1.073 -1.626 H7 JKC 26 JKC H8 H8 H 0 1 N N N 9.124 0.127 0.143 0.026 0.775 0.489 H8 JKC 27 JKC H9 H9 H 0 1 N N N 7.732 0.006 2.187 1.522 -1.597 0.158 H9 JKC 28 JKC H10 H10 H 0 1 N N N 6.726 1.324 1.498 1.532 -0.708 -1.384 H10 JKC 29 JKC H11 H11 H 0 1 N N N 5.657 -0.945 1.328 2.404 1.300 -0.220 H11 JKC 30 JKC H12 H12 H 0 1 N N N 7.017 -1.469 0.279 2.394 0.411 1.322 H12 JKC 31 JKC H13 H13 H 0 1 N N N 6.457 0.207 -1.388 3.985 -1.241 0.380 H13 JKC 32 JKC H14 H14 H 0 1 N N N 5.213 0.927 -0.311 3.995 -0.352 -1.162 H14 JKC 33 JKC H15 H15 H 0 1 N N N 4.164 -0.363 -2.059 4.804 0.838 1.528 H15 JKC 34 JKC HXT H16 H 0 1 N Y N 6.021 -3.788 -1.612 7.636 -1.272 0.922 H16 JKC 35 JKC H17 H17 H 0 1 N N N 3.113 -0.571 0.072 5.571 2.616 0.141 H17 JKC 36 JKC H18 H18 H 0 1 N Y N 2.872 -1.889 -0.861 5.057 1.835 -1.235 H18 JKC 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JKC O C DOUB N N 1 JKC C CA SING N N 2 JKC C OXT SING N N 3 JKC C1 C2 SING N N 4 JKC C1 O2 SING N N 5 JKC CA CB SING N N 6 JKC CA N SING N N 7 JKC C3 C2 DOUB Y N 8 JKC C3 C4 SING Y N 9 JKC C2 C7 SING Y N 10 JKC O2 CZ SING N N 11 JKC CB CG SING N N 12 JKC C7 C6 DOUB Y N 13 JKC C4 C5 DOUB Y N 14 JKC CZ O1 DOUB N N 15 JKC CZ NE SING N N 16 JKC NE CD SING N N 17 JKC C6 C5 SING Y N 18 JKC CG CD SING N N 19 JKC C7 H1 SING N N 20 JKC C6 H2 SING N N 21 JKC C5 H3 SING N N 22 JKC C4 H4 SING N N 23 JKC C3 H5 SING N N 24 JKC C1 H6 SING N N 25 JKC C1 H7 SING N N 26 JKC NE H8 SING N N 27 JKC CD H9 SING N N 28 JKC CD H10 SING N N 29 JKC CG H11 SING N N 30 JKC CG H12 SING N N 31 JKC CB H13 SING N N 32 JKC CB H14 SING N N 33 JKC CA H15 SING N N 34 JKC OXT HXT SING N N 35 JKC N H17 SING N N 36 JKC N H18 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JKC InChI InChI 1.06 "InChI=1S/C13H18N2O4/c14-11(12(16)17)7-4-8-15-13(18)19-9-10-5-2-1-3-6-10/h1-3,5-6,11H,4,7-9,14H2,(H,15,18)(H,16,17)/t11-/m0/s1" JKC InChIKey InChI 1.06 VULSXQYFUHKBAN-NSHDSACASA-N JKC SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCNC(=O)OCc1ccccc1)C(O)=O" JKC SMILES CACTVS 3.385 "N[CH](CCCNC(=O)OCc1ccccc1)C(O)=O" JKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NCCC[C@@H](C(=O)O)N" JKC SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COC(=O)NCCCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id JKC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-5-(phenylmethoxycarbonylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JKC "Create component" 2022-08-18 PDBJ JKC "Initial release" 2022-11-16 RCSB #