data_JKR # _chem_comp.id JKR _chem_comp.name "3-[5-[3-bis(oxidanyl)phosphanyloxypropoxy]naphthalen-1-yl]oxypropyl 3-(5-oxidanylnaphthalen-1-yl)oxypropyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H34 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-04 _chem_comp.pdbx_modified_date 2022-11-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 620.521 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JKR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZKL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JKR C8 C1 C 0 1 Y N N 87.192 -41.073 52.484 -5.031 -0.041 -0.128 C8 JKR 1 JKR C5 C2 C 0 1 Y N N 85.320 -42.680 53.834 -7.167 1.722 -0.325 C5 JKR 2 JKR C6 C3 C 0 1 Y N N 85.779 -43.033 52.554 -5.858 2.184 -0.429 C6 JKR 3 JKR C2 C4 C 0 1 N N N 83.703 -40.629 57.290 -11.109 0.270 -0.004 C2 JKR 4 JKR C3 C5 C 0 1 N N N 84.151 -41.549 56.182 -9.743 0.944 -0.140 C3 JKR 5 JKR C4 C6 C 0 1 Y N N 85.787 -41.541 54.438 -7.430 0.396 -0.124 C4 JKR 6 JKR O1 O1 O 0 1 N N N 79.712 -39.775 59.779 -15.946 0.317 -0.289 O1 JKR 7 JKR P1 P1 P 0 1 N N N 80.676 -39.132 58.800 -14.878 1.503 -0.080 P1 JKR 8 JKR O2 O2 O 0 1 N N N 81.778 -38.299 59.442 -15.120 1.904 1.460 O2 JKR 9 JKR O4 O3 O 0 1 N N N 81.406 -40.294 57.945 -13.489 0.693 -0.000 O4 JKR 10 JKR C1 C7 C 0 1 N N N 82.417 -39.908 56.974 -12.212 1.323 -0.127 C1 JKR 11 JKR O5 O4 O 0 1 N N N 85.419 -41.117 55.665 -8.713 -0.040 -0.025 O5 JKR 12 JKR C7 C8 C 0 1 Y N N 86.691 -42.261 51.890 -4.802 1.329 -0.334 C7 JKR 13 JKR C9 C9 C 0 1 Y N N 88.141 -40.234 51.824 -3.961 -0.955 -0.031 C9 JKR 14 JKR O6 O5 O 0 1 N N N 88.508 -40.669 50.599 -2.679 -0.520 -0.130 O6 JKR 15 JKR C10 C10 C 0 1 N N N 89.639 -40.051 49.966 -1.649 -1.505 -0.021 C10 JKR 16 JKR C11 C11 C 0 1 N N N 90.275 -41.003 48.983 -0.282 -0.831 -0.157 C11 JKR 17 JKR C12 C12 C 0 1 N N N 91.574 -40.495 48.402 0.820 -1.885 -0.040 C12 JKR 18 JKR O7 O6 O 0 1 N N N 92.591 -40.456 49.446 2.097 -1.256 -0.167 O7 JKR 19 JKR P2 P2 P 0 1 N N N 93.609 -41.689 49.623 3.486 -2.067 -0.093 P2 JKR 20 JKR O8 O7 O 0 1 N N N 95.000 -41.126 49.512 3.585 -3.076 -1.343 O8 JKR 21 JKR O9 O8 O 0 1 N N N 93.184 -42.803 48.706 3.540 -2.838 1.169 O9 JKR 22 JKR O10 O9 O 0 1 N N N 93.361 -42.161 51.142 4.716 -1.030 -0.142 O10 JKR 23 JKR C13 C13 C 0 1 N N N 93.918 -41.378 52.238 6.079 -1.431 0.010 C13 JKR 24 JKR C14 C14 C 0 1 N N N 95.115 -42.094 52.818 6.987 -0.203 -0.088 C14 JKR 25 JKR C15 C15 C 0 1 N N N 94.883 -42.632 54.209 8.446 -0.633 0.074 C15 JKR 26 JKR O11 O10 O 0 1 N N N 93.927 -43.704 54.172 9.293 0.513 -0.017 O11 JKR 27 JKR C16 C16 C 0 1 Y N N 93.101 -43.884 55.224 10.630 0.304 0.107 C16 JKR 28 JKR C17 C17 C 0 1 Y N N 92.966 -43.018 56.280 11.113 -0.958 0.309 C17 JKR 29 JKR C18 C18 C 0 1 Y N N 92.067 -43.313 57.320 12.479 -1.189 0.439 C18 JKR 30 JKR C19 C19 C 0 1 Y N N 91.318 -44.457 57.308 13.374 -0.165 0.368 C19 JKR 31 JKR C20 C20 C 0 1 Y N N 91.433 -45.376 56.229 12.917 1.147 0.161 C20 JKR 32 JKR C21 C21 C 0 1 Y N N 90.669 -46.586 56.165 13.816 2.231 0.082 C21 JKR 33 JKR O12 O11 O 0 1 N N N 89.837 -46.782 57.209 15.152 2.022 0.207 O12 JKR 34 JKR C28 C22 C 0 1 Y N N 90.802 -47.449 55.108 13.333 3.493 -0.120 C28 JKR 35 JKR C29 C23 C 0 1 Y N N 91.698 -47.150 54.067 11.966 3.723 -0.251 C29 JKR 36 JKR C30 C24 C 0 1 Y N N 92.450 -46.007 54.084 11.072 2.700 -0.180 C30 JKR 37 JKR C31 C25 C 0 1 Y N N 92.336 -45.090 55.164 11.528 1.387 0.022 C31 JKR 38 JKR C32 C26 C 0 1 Y N N 88.605 -39.091 52.426 -4.224 -2.282 0.164 C32 JKR 39 JKR C33 C27 C 0 1 Y N N 88.148 -38.737 53.707 -5.534 -2.744 0.269 C33 JKR 40 JKR C34 C28 C 0 1 Y N N 87.242 -39.510 54.376 -6.589 -1.888 0.179 C34 JKR 41 JKR C35 C29 C 0 1 Y N N 86.739 -40.698 53.781 -6.361 -0.517 -0.021 C35 JKR 42 JKR H1 H1 H 0 1 N N N 84.600 -43.305 54.342 -7.986 2.421 -0.404 H1 JKR 43 JKR H2 H2 H 0 1 N N N 85.404 -43.931 52.086 -5.677 3.236 -0.588 H2 JKR 44 JKR H3 H3 H 0 1 N N N 83.555 -41.225 58.202 -11.228 -0.474 -0.792 H3 JKR 45 JKR H4 H4 H 0 1 N N N 84.490 -39.881 57.464 -11.179 -0.217 0.968 H4 JKR 46 JKR H5 H5 H 0 1 N N N 83.405 -41.536 55.374 -9.673 1.431 -1.113 H5 JKR 47 JKR H6 H6 H 0 1 N N N 84.248 -42.572 56.575 -9.624 1.688 0.648 H6 JKR 48 JKR H7 H7 H 0 1 N N N 79.278 -39.099 60.287 -16.861 0.620 -0.361 H7 JKR 49 JKR H8 H8 H 0 1 N N N 81.389 -37.601 59.956 -14.552 2.621 1.775 H8 JKR 50 JKR H9 H9 H 0 1 N N N 82.581 -38.822 57.025 -12.094 2.067 0.661 H9 JKR 51 JKR H10 H10 H 0 1 N N N 82.080 -40.181 55.963 -12.142 1.810 -1.100 H10 JKR 52 JKR H11 H11 H 0 1 N N N 87.032 -42.556 50.909 -3.793 1.703 -0.417 H11 JKR 53 JKR H12 H12 H 0 1 N N N 90.378 -39.774 50.733 -1.717 -1.996 0.949 H12 JKR 54 JKR H13 H13 H 0 1 N N N 89.308 -39.147 49.433 -1.769 -2.245 -0.812 H13 JKR 55 JKR H14 H14 H 0 1 N N N 89.568 -41.174 48.158 -0.214 -0.340 -1.127 H14 JKR 56 JKR H15 H15 H 0 1 N N N 90.473 -41.954 49.499 -0.162 -0.091 0.635 H15 JKR 57 JKR H16 H16 H 0 1 N N N 91.902 -41.167 47.595 0.752 -2.377 0.931 H16 JKR 58 JKR H17 H17 H 0 1 N N N 91.424 -39.483 47.998 0.700 -2.625 -0.831 H17 JKR 59 JKR H18 H18 H 0 1 N N N 95.472 -41.580 48.824 3.555 -2.639 -2.205 H18 JKR 60 JKR H19 H19 H 0 1 N N N 94.228 -40.392 51.862 6.212 -1.905 0.982 H19 JKR 61 JKR H20 H20 H 0 1 N N N 93.155 -41.249 53.020 6.339 -2.139 -0.778 H20 JKR 62 JKR H21 H21 H 0 1 N N N 95.370 -42.936 52.158 6.853 0.271 -1.060 H21 JKR 63 JKR H22 H22 H 0 1 N N N 95.958 -41.388 52.854 6.727 0.504 0.700 H22 JKR 64 JKR H23 H23 H 0 1 N N N 95.833 -43.006 54.617 8.579 -1.107 1.047 H23 JKR 65 JKR H24 H24 H 0 1 N N N 94.500 -41.825 54.852 8.706 -1.341 -0.713 H24 JKR 66 JKR H25 H25 H 0 1 N N N 93.550 -42.110 56.312 10.424 -1.788 0.370 H25 JKR 67 JKR H26 H26 H 0 1 N N N 91.966 -42.623 58.144 12.835 -2.196 0.598 H26 JKR 68 JKR H27 H27 H 0 1 N N N 90.637 -44.663 58.121 14.431 -0.361 0.471 H27 JKR 69 JKR H28 H28 H 0 1 N N N 89.914 -46.056 57.817 15.603 1.845 -0.631 H28 JKR 70 JKR H29 H29 H 0 1 N N N 90.219 -48.358 55.075 14.022 4.323 -0.180 H29 JKR 71 JKR H30 H30 H 0 1 N N N 91.795 -47.835 53.238 11.610 4.731 -0.406 H30 JKR 72 JKR H31 H31 H 0 1 N N N 93.133 -45.801 53.273 10.014 2.896 -0.282 H31 JKR 73 JKR H32 H32 H 0 1 N N N 89.321 -38.464 51.915 -3.405 -2.982 0.238 H32 JKR 74 JKR H33 H33 H 0 1 N N N 88.520 -37.836 54.172 -5.715 -3.797 0.422 H33 JKR 75 JKR H34 H34 H 0 1 N N N 86.907 -39.217 55.360 -7.599 -2.263 0.262 H34 JKR 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JKR C12 C11 SING N N 1 JKR C12 O7 SING N N 2 JKR O9 P2 DOUB N N 3 JKR C11 C10 SING N N 4 JKR O7 P2 SING N N 5 JKR O8 P2 SING N N 6 JKR P2 O10 SING N N 7 JKR C10 O6 SING N N 8 JKR O6 C9 SING N N 9 JKR O10 C13 SING N N 10 JKR C9 C32 DOUB Y N 11 JKR C9 C8 SING Y N 12 JKR C7 C8 DOUB Y N 13 JKR C7 C6 SING Y N 14 JKR C13 C14 SING N N 15 JKR C32 C33 SING Y N 16 JKR C8 C35 SING Y N 17 JKR C6 C5 DOUB Y N 18 JKR C14 C15 SING N N 19 JKR C33 C34 DOUB Y N 20 JKR C35 C34 SING Y N 21 JKR C35 C4 DOUB Y N 22 JKR C5 C4 SING Y N 23 JKR C29 C30 DOUB Y N 24 JKR C29 C28 SING Y N 25 JKR C30 C31 SING Y N 26 JKR O11 C15 SING N N 27 JKR O11 C16 SING N N 28 JKR C4 O5 SING N N 29 JKR C28 C21 DOUB Y N 30 JKR C31 C16 DOUB Y N 31 JKR C31 C20 SING Y N 32 JKR C16 C17 SING Y N 33 JKR O5 C3 SING N N 34 JKR C21 C20 SING Y N 35 JKR C21 O12 SING N N 36 JKR C3 C2 SING N N 37 JKR C20 C19 DOUB Y N 38 JKR C17 C18 DOUB Y N 39 JKR C1 C2 SING N N 40 JKR C1 O4 SING N N 41 JKR C19 C18 SING Y N 42 JKR O4 P1 SING N N 43 JKR P1 O2 SING N N 44 JKR P1 O1 SING N N 45 JKR C5 H1 SING N N 46 JKR C6 H2 SING N N 47 JKR C2 H3 SING N N 48 JKR C2 H4 SING N N 49 JKR C3 H5 SING N N 50 JKR C3 H6 SING N N 51 JKR O1 H7 SING N N 52 JKR O2 H8 SING N N 53 JKR C1 H9 SING N N 54 JKR C1 H10 SING N N 55 JKR C7 H11 SING N N 56 JKR C10 H12 SING N N 57 JKR C10 H13 SING N N 58 JKR C11 H14 SING N N 59 JKR C11 H15 SING N N 60 JKR C12 H16 SING N N 61 JKR C12 H17 SING N N 62 JKR O8 H18 SING N N 63 JKR C13 H19 SING N N 64 JKR C13 H20 SING N N 65 JKR C14 H21 SING N N 66 JKR C14 H22 SING N N 67 JKR C15 H23 SING N N 68 JKR C15 H24 SING N N 69 JKR C17 H25 SING N N 70 JKR C18 H26 SING N N 71 JKR C19 H27 SING N N 72 JKR O12 H28 SING N N 73 JKR C28 H29 SING N N 74 JKR C29 H30 SING N N 75 JKR C30 H31 SING N N 76 JKR C32 H32 SING N N 77 JKR C33 H33 SING N N 78 JKR C34 H34 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JKR InChI InChI 1.06 "InChI=1S/C29H34O11P2/c30-26-12-1-9-23-22(26)8-2-13-27(23)36-17-6-20-39-42(33,34)40-21-7-18-37-29-15-4-10-24-25(29)11-3-14-28(24)35-16-5-19-38-41(31)32/h1-4,8-15,30-32H,5-7,16-21H2,(H,33,34)" JKR InChIKey InChI 1.06 ZWBSUQKVIPHNOV-UHFFFAOYSA-N JKR SMILES_CANONICAL CACTVS 3.385 "OP(O)OCCCOc1cccc2c(OCCCO[P](O)(=O)OCCCOc3cccc4c(O)cccc34)cccc12" JKR SMILES CACTVS 3.385 "OP(O)OCCCOc1cccc2c(OCCCO[P](O)(=O)OCCCOc3cccc4c(O)cccc34)cccc12" JKR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cccc2OCCCOP(=O)(O)OCCCOc3cccc4c3cccc4OCCCOP(O)O)c(c1)O" JKR SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cccc2OCCCOP(=O)(O)OCCCOc3cccc4c3cccc4OCCCOP(O)O)c(c1)O" # _pdbx_chem_comp_identifier.comp_id JKR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[5-[3-bis(oxidanyl)phosphanyloxypropoxy]naphthalen-1-yl]oxypropyl 3-(5-oxidanylnaphthalen-1-yl)oxypropyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JKR "Create component" 2022-05-04 PDBE JKR "Modify descriptor" 2022-08-22 RCSB JKR "Initial release" 2022-11-30 RCSB #