data_JKU # _chem_comp.id JKU _chem_comp.name "(2S)-2-[[(2S)-2-[2-[(2-azanyl-4-oxidanylidene-3H-pteridin-7-yl)carbonylamino]ethanoylamino]-3-phenyl-propanoyl]amino]-5-(phenylmethoxycarbonylamino)pentanoic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H33 N9 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-18 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 659.649 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JKU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Y4K _chem_comp.pdbx_subcomponent_list "JP2 GLY PHE JKC" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JKU C2 C28 C 0 1 N N N -8.640 -3.090 -0.130 -7.391 3.943 1.242 C1 JP2 1 JKU N2 N7 N 0 1 N N N -9.740 -2.360 -0.280 -7.046 4.778 2.273 N1 JP2 2 JKU O4 O8 O 0 1 N N N -7.680 -6.410 0.660 -10.028 3.511 -0.978 O1 JP2 3 JKU C4 C29 C 0 1 N N N -7.570 -5.210 0.410 -8.966 3.345 -0.408 C2 JP2 4 JKU N3 N8 N 0 1 N N N -8.740 -4.460 0.200 -8.585 4.145 0.615 N2 JP2 5 JKU C4A C30 C 0 1 Y N N -6.320 -4.580 0.300 -8.040 2.270 -0.813 C3 JP2 6 JKU N1 N6 N 0 1 N N N -7.430 -2.510 -0.240 -6.555 2.992 0.904 N3 JP2 7 JKU OBU O7 O 0 1 N N N -2.190 -2.130 1.200 -5.587 -1.477 -2.729 O3 JP2 8 JKU C8A C27 C 0 1 Y N N -6.290 -3.210 -0.040 -6.823 2.138 -0.102 C4 JP2 9 JKU N8 N5 N 0 1 Y N N -5.100 -2.570 -0.110 -5.968 1.175 -0.439 N4 JP2 10 JKU C7 C26 C 0 1 Y N N -3.920 -3.190 0.140 -6.268 0.353 -1.436 C5 JP2 11 JKU N5 N9 N 0 1 Y N N -5.150 -5.230 0.550 -8.327 1.442 -1.807 N5 JP2 12 JKU C6 C31 C 0 1 Y N N -3.910 -4.550 0.490 -7.473 0.491 -2.133 C6 JP2 13 JKU CBH C25 C 0 1 N N N -2.740 -2.440 0.150 -5.317 -0.721 -1.816 C7 JP2 14 JKU NBG N4 N 0 1 N N N -2.300 -2.120 -1.080 -4.154 -0.859 -1.149 N GLY 15 JKU CBF C24 C 0 1 N N N -1.190 -1.190 -1.360 -3.216 -1.920 -1.524 CA GLY 16 JKU CBE C23 C 0 1 N N N 0.150 -1.600 -0.740 -2.004 -1.857 -0.630 C GLY 17 JKU OBV O6 O 0 1 N N N 0.900 -2.370 -1.340 -1.932 -1.010 0.235 O GLY 18 JKU NBD N3 N 0 1 N N N 0.390 -1.040 0.460 -1.001 -2.743 -0.792 N PHE 19 JKU CAV C15 C 0 1 N N S 1.640 -1.160 1.230 0.177 -2.682 0.077 CA PHE 20 JKU CAB C14 C 0 1 N N N 2.820 -0.550 0.450 1.357 -3.296 -0.633 C PHE 21 JKU OAA O5 O 0 1 N N N 3.060 0.650 0.600 1.226 -3.740 -1.753 O PHE 22 JKU CAW C16 C 0 1 N N N 1.780 -2.470 2.020 -0.101 -3.455 1.367 CB PHE 23 JKU CAX C17 C 0 1 Y N N 2.590 -3.480 1.500 -1.200 -2.769 2.137 CG PHE 24 JKU CAY C18 C 0 1 Y N N 3.920 -3.600 1.970 -2.519 -3.118 1.918 CD1 PHE 25 JKU CBC C22 C 0 1 Y N N 2.060 -4.450 0.610 -0.888 -1.795 3.067 CD2 PHE 26 JKU CAZ C19 C 0 1 Y N N 4.720 -4.690 1.550 -3.527 -2.488 2.623 CE1 PHE 27 JKU CBB C21 C 0 1 Y N N 2.860 -5.530 0.190 -1.896 -1.170 3.778 CE2 PHE 28 JKU CBA C20 C 0 1 Y N N 4.180 -5.640 0.660 -3.216 -1.510 3.549 CZ PHE 29 JKU CAM C1 C 0 1 Y N N 9.700 5.520 -0.290 9.138 4.776 -1.222 C7 JKC 30 JKU CAN C2 C 0 1 Y N N 10.400 6.540 0.390 9.040 6.105 -1.592 C6 JKC 31 JKU CAO C3 C 0 1 Y N N 11.810 6.540 0.400 8.426 7.013 -0.750 C5 JKC 32 JKU CAP C4 C 0 1 Y N N 12.540 5.540 -0.280 7.909 6.593 0.461 C4 JKC 33 JKU CAQ C5 C 0 1 Y N N 11.850 4.520 -0.970 8.007 5.265 0.831 C3 JKC 34 JKU CAL C6 C 0 1 Y N N 10.430 4.520 -0.970 8.616 4.355 -0.013 C2 JKC 35 JKU CAK C7 C 0 1 N N N 9.740 3.520 -1.680 8.723 2.907 0.390 C1 JKC 36 JKU OAJ O1 O 0 1 N N N 9.690 2.290 -0.940 7.552 2.187 -0.076 O2 JKC 37 JKU CAI C8 C 0 1 N N N 8.590 2.050 -0.150 7.491 0.872 0.204 CZ JKC 38 JKU OAR O2 O 0 1 N N N 7.760 2.930 0.100 8.392 0.340 0.822 O1 JKC 39 JKU NAH N1 N 0 1 N N N 8.440 0.820 0.370 6.430 0.145 -0.200 NE JKC 40 JKU CAG C9 C 0 1 N N N 7.320 0.430 1.260 6.364 -1.287 0.105 CD JKC 41 JKU CAF C10 C 0 1 N N N 6.410 -0.610 0.600 5.068 -1.870 -0.462 CG JKC 42 JKU CB C11 C 0 1 N N N 5.700 -0.010 -0.620 4.999 -3.364 -0.144 CB JKC 43 JKU CA C12 C 0 1 N N S 4.630 -0.930 -1.240 3.703 -3.947 -0.711 CA JKC 44 JKU C C13 C 0 1 N N N 5.310 -2.150 -1.880 3.692 -5.440 -0.506 C JKC 45 JKU O O3 O 0 1 N N N 5.750 -2.000 -3.030 2.816 -5.953 0.150 O JKC 46 JKU OXT O4 O 0 1 N N N 5.490 -3.150 -1.150 4.655 -6.200 -1.050 OXT JKC 47 JKU N N2 N 0 1 N N N 3.550 -1.370 -0.340 2.556 -3.351 -0.021 N JKC 48 JKU H30 H30 H 0 1 N N N -9.668 -1.382 -0.474 -7.646 5.492 2.540 HN1 JP2 49 JKU H31 H31 H 0 1 N N N -10.640 -2.789 -0.199 -6.203 4.655 2.736 HN1A JP2 50 JKU H33 H33 H 0 1 N N N -2.984 -5.062 0.707 -7.706 -0.184 -2.943 H6 JP2 51 JKU H32 H32 H 0 1 N N N -9.637 -4.893 0.284 -9.165 4.866 0.904 H32 JP2 52 JKU H29 H29 H 0 1 N N N -2.759 -2.543 -1.861 -3.939 -0.256 -0.420 H GLY 53 JKU H27 H27 H 0 1 N N N -1.060 -1.128 -2.451 -3.700 -2.890 -1.412 HA2 GLY 54 JKU H28 H28 H 0 1 N N N -1.463 -0.200 -0.966 -2.910 -1.784 -2.561 HA3 GLY 55 JKU H26 H26 H 0 1 N N N -0.344 -0.495 0.864 -1.059 -3.420 -1.484 H PHE 56 JKU H18 H18 H 0 1 N N N 1.495 -0.424 2.034 0.398 -1.642 0.317 HA PHE 57 JKU H19 H19 H 0 1 N N N 2.182 -2.210 3.011 -0.408 -4.472 1.123 HB2 PHE 58 JKU H20 H20 H 0 1 N N N 0.770 -2.890 2.133 0.804 -3.485 1.975 HB3 PHE 59 JKU H21 H21 H 0 1 N N N 4.323 -2.862 2.647 -2.762 -3.882 1.194 HD1 PHE 60 JKU H25 H25 H 0 1 N N N 1.044 -4.360 0.255 0.143 -1.523 3.239 HD2 PHE 61 JKU H22 H22 H 0 1 N N N 5.734 -4.792 1.908 -4.558 -2.760 2.451 HE1 PHE 62 JKU H24 H24 H 0 1 N N N 2.462 -6.269 -0.489 -1.652 -0.409 4.505 HE2 PHE 63 JKU H23 H23 H 0 1 N N N 4.792 -6.468 0.333 -4.003 -1.022 4.104 HZ PHE 64 JKU H1 H1 H 0 1 N N N 8.620 5.504 -0.290 9.618 4.067 -1.879 H1 JKC 65 JKU H2 H2 H 0 1 N N N 9.856 7.320 0.902 9.444 6.433 -2.538 H2 JKC 66 JKU H3 H3 H 0 1 N N N 12.339 7.315 0.935 8.349 8.051 -1.039 H3 JKC 67 JKU H4 H4 H 0 1 N N N 13.620 5.556 -0.272 7.429 7.303 1.119 H4 JKC 68 JKU H5 H5 H 0 1 N N N 12.396 3.748 -1.492 7.599 4.936 1.776 H5 JKC 69 JKU H6 H6 H 0 1 N N N 8.713 3.863 -1.874 9.618 2.471 -0.054 H6 JKC 70 JKU H7 H7 H 0 1 N N N 10.253 3.341 -2.636 8.785 2.836 1.476 H7 JKC 71 JKU H8 H8 H 0 1 N N N 9.124 0.127 0.143 5.711 0.569 -0.693 H8 JKC 72 JKU H9 H9 H 0 1 N N N 7.732 0.006 2.187 7.218 -1.794 -0.345 H9 JKC 73 JKU H10 H10 H 0 1 N N N 6.726 1.324 1.498 6.385 -1.429 1.185 H10 JKC 74 JKU H11 H11 H 0 1 N N N 5.657 -0.945 1.328 4.214 -1.362 -0.013 H11 JKC 75 JKU H12 H12 H 0 1 N N N 7.017 -1.469 0.279 5.048 -1.727 -1.543 H12 JKC 76 JKU H13 H13 H 0 1 N N N 6.457 0.207 -1.388 5.853 -3.872 -0.593 H13 JKC 77 JKU H14 H14 H 0 1 N N N 5.213 0.927 -0.311 5.019 -3.507 0.937 H14 JKC 78 JKU H15 H15 H 0 1 N N N 4.164 -0.363 -2.059 3.641 -3.727 -1.777 H15 JKC 79 JKU H16 H16 H 0 1 N N N 6.021 -3.788 -1.612 4.605 -7.153 -0.891 HXT JKC 80 JKU H17 H17 H 0 1 N N N 3.341 -2.347 -0.311 2.661 -2.995 0.875 H17 JKC 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JKU O C DOUB N N 1 JKU C CA SING N N 2 JKU C OXT SING N N 3 JKU CAK CAL SING N N 4 JKU CAK OAJ SING N N 5 JKU CBF NBG SING N N 6 JKU CBF CBE SING N N 7 JKU OBV CBE DOUB N N 8 JKU CA CB SING N N 9 JKU CA N SING N N 10 JKU NBG CBH SING N N 11 JKU CAQ CAL DOUB Y N 12 JKU CAQ CAP SING Y N 13 JKU CAL CAM SING Y N 14 JKU OAJ CAI SING N N 15 JKU CBE NBD SING N N 16 JKU CB CAF SING N N 17 JKU N CAB SING N N 18 JKU CAM CAN DOUB Y N 19 JKU CAP CAO DOUB Y N 20 JKU N2 C2 SING N N 21 JKU N1 C2 DOUB N N 22 JKU N1 C8A SING N N 23 JKU CAI OAR DOUB N N 24 JKU CAI NAH SING N N 25 JKU C2 N3 SING N N 26 JKU N8 C8A DOUB Y N 27 JKU N8 C7 SING Y N 28 JKU C8A C4A SING Y N 29 JKU C7 CBH SING N N 30 JKU C7 C6 DOUB Y N 31 JKU CBH OBU DOUB N N 32 JKU CBB CBC DOUB Y N 33 JKU CBB CBA SING Y N 34 JKU N3 C4 SING N N 35 JKU C4A C4 SING N N 36 JKU C4A N5 DOUB Y N 37 JKU NAH CAG SING N N 38 JKU CAN CAO SING Y N 39 JKU C4 O4 DOUB N N 40 JKU CAB OAA DOUB N N 41 JKU CAB CAV SING N N 42 JKU NBD CAV SING N N 43 JKU C6 N5 SING Y N 44 JKU CAF CAG SING N N 45 JKU CBC CAX SING Y N 46 JKU CBA CAZ DOUB Y N 47 JKU CAV CAW SING N N 48 JKU CAX CAY DOUB Y N 49 JKU CAX CAW SING N N 50 JKU CAZ CAY SING Y N 51 JKU CAM H1 SING N N 52 JKU CAN H2 SING N N 53 JKU CAO H3 SING N N 54 JKU CAP H4 SING N N 55 JKU CAQ H5 SING N N 56 JKU CAK H6 SING N N 57 JKU CAK H7 SING N N 58 JKU NAH H8 SING N N 59 JKU CAG H9 SING N N 60 JKU CAG H10 SING N N 61 JKU CAF H11 SING N N 62 JKU CAF H12 SING N N 63 JKU CB H13 SING N N 64 JKU CB H14 SING N N 65 JKU CA H15 SING N N 66 JKU OXT H16 SING N N 67 JKU N H17 SING N N 68 JKU CAV H18 SING N N 69 JKU CAW H19 SING N N 70 JKU CAW H20 SING N N 71 JKU CAY H21 SING N N 72 JKU CAZ H22 SING N N 73 JKU CBA H23 SING N N 74 JKU CBB H24 SING N N 75 JKU CBC H25 SING N N 76 JKU NBD H26 SING N N 77 JKU CBF H27 SING N N 78 JKU CBF H28 SING N N 79 JKU NBG H29 SING N N 80 JKU N2 H30 SING N N 81 JKU N2 H31 SING N N 82 JKU N3 H32 SING N N 83 JKU C6 H33 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JKU InChI InChI 1.06 "InChI=1S/C31H33N9O8/c32-30-39-25-24(28(44)40-30)34-15-22(37-25)26(42)35-16-23(41)36-21(14-18-8-3-1-4-9-18)27(43)38-20(29(45)46)12-7-13-33-31(47)48-17-19-10-5-2-6-11-19/h1-6,8-11,15,20-21H,7,12-14,16-17H2,(H,33,47)(H,35,42)(H,36,41)(H,38,43)(H,45,46)(H3,32,37,39,40,44)/t20-,21-/m0/s1" JKU InChIKey InChI 1.06 QOJLCYQYXRRJPT-SFTDATJTSA-N JKU SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2nc(cnc2C(=O)N1)C(=O)NCC(=O)N[C@@H](Cc3ccccc3)C(=O)N[C@@H](CCCNC(=O)OCc4ccccc4)C(O)=O" JKU SMILES CACTVS 3.385 "NC1=Nc2nc(cnc2C(=O)N1)C(=O)NCC(=O)N[CH](Cc3ccccc3)C(=O)N[CH](CCCNC(=O)OCc4ccccc4)C(O)=O" JKU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@@H](C(=O)N[C@@H](CCCNC(=O)OCc2ccccc2)C(=O)O)NC(=O)CNC(=O)c3cnc4c(n3)N=C(NC4=O)N" JKU SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(C(=O)NC(CCCNC(=O)OCc2ccccc2)C(=O)O)NC(=O)CNC(=O)c3cnc4c(n3)N=C(NC4=O)N" # _pdbx_chem_comp_identifier.comp_id JKU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-[2-[(2-azanyl-4-oxidanylidene-3~{H}-pteridin-7-yl)carbonylamino]ethanoylamino]-3-phenyl-propanoyl]amino]-5-(phenylmethoxycarbonylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JKU "Create component" 2022-08-18 PDBJ JKU "Initial release" 2022-11-16 RCSB #