data_JLT # _chem_comp.id JLT _chem_comp.name "3,7-anhydro-1,2,8-trideoxy-1,8-diphosphono-D-glycero-D-gulo-octitol" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H18 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(2~{S},3~{S},4~{R},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-(2-phosphonoethyl)oxan-2-yl]methylphosphonic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-11 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.170 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JLT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6QZG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JLT _pdbx_chem_comp_synonyms.name "[(2~{S},3~{S},4~{R},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-(2-phosphonoethyl)oxan-2-yl]methylphosphonic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JLT C4 C4 C 0 1 N N R 7.590 -1.285 8.607 -0.359 -2.579 0.147 C4 JLT 1 JLT C5 C5 C 0 1 N N S 6.885 -0.154 7.835 0.174 -1.217 -0.304 C5 JLT 2 JLT C7 C7 C 0 1 N N N 3.929 0.588 10.247 -2.708 0.961 0.622 C7 JLT 3 JLT C8 C8 C 0 1 N N N 7.968 0.740 7.154 1.636 -1.074 0.124 C8 JLT 4 JLT O2 O2 O 0 1 N N N 7.135 -3.419 9.817 -2.364 -3.929 0.251 O2 JLT 5 JLT C9 C9 C 0 1 N N N 7.738 2.257 7.163 2.205 0.232 -0.434 C9 JLT 6 JLT O1 O1 O 0 1 N N N 8.434 -2.000 7.696 0.378 -3.619 -0.498 O1 JLT 7 JLT C1 C1 C 0 1 N N S 4.957 -0.339 9.499 -1.986 -0.205 -0.056 C1 JLT 8 JLT C2 C2 C 0 1 N N S 5.767 -1.427 10.303 -2.606 -1.527 0.405 C2 JLT 9 JLT C3 C3 C 0 1 N N R 6.559 -2.227 9.257 -1.839 -2.690 -0.231 C3 JLT 10 JLT O3 O3 O 0 1 N N N 5.003 -2.360 11.114 -3.976 -1.579 -0.000 O3 JLT 11 JLT O6 O6 O 0 1 N N N 5.887 0.494 8.697 -0.602 -0.180 0.299 O6 JLT 12 JLT P10 P10 P 0 1 N N N 6.976 2.936 5.637 3.947 0.402 0.075 P10 JLT 13 JLT P11 P11 P 0 1 N N N 3.031 0.143 11.827 -2.071 2.537 -0.038 P11 JLT 14 JLT O12 O12 O 0 1 N N N 6.805 4.449 5.812 4.821 -0.768 -0.603 O12 JLT 15 JLT O14 O14 O 0 1 N N N 5.604 2.273 5.445 4.508 1.835 -0.399 O14 JLT 16 JLT O15 O15 O 0 1 N N N 7.817 2.629 4.388 4.043 0.298 1.548 O15 JLT 17 JLT O16 O16 O 0 1 N N N 3.673 0.843 13.048 -2.445 2.655 -1.599 O16 JLT 18 JLT O17 O17 O 0 1 N N N 2.908 -1.359 12.117 -2.735 3.763 0.767 O17 JLT 19 JLT O18 O18 O 0 1 N N N 1.630 0.671 11.568 -0.601 2.580 0.123 O18 JLT 20 JLT H1 H1 H 0 1 N N N 8.199 -0.834 9.404 -0.251 -2.673 1.228 H1 JLT 21 JLT H2 H2 H 0 1 N N N 6.335 -0.639 7.015 0.103 -1.140 -1.389 H2 JLT 22 JLT H3 H3 H 0 1 N N N 4.480 1.513 10.474 -3.778 0.890 0.424 H3 JLT 23 JLT H4 H4 H 0 1 N N N 3.139 0.802 9.512 -2.534 0.920 1.697 H4 JLT 24 JLT H5 H5 H 0 1 N N N 8.044 0.424 6.103 1.697 -1.062 1.212 H5 JLT 25 JLT H6 H6 H 0 1 N N N 8.923 0.548 7.665 2.211 -1.916 -0.263 H6 JLT 26 JLT H7 H7 H 0 1 N N N 6.449 -3.953 10.200 -3.300 -4.066 0.047 H7 JLT 27 JLT H8 H8 H 0 1 N N N 8.711 2.749 7.306 2.144 0.219 -1.522 H8 JLT 28 JLT H9 H9 H 0 1 N N N 7.078 2.497 8.010 1.630 1.073 -0.048 H9 JLT 29 JLT H10 H10 H 0 1 N N N 8.877 -2.702 8.158 0.089 -4.511 -0.261 H10 JLT 30 JLT H11 H11 H 0 1 N N N 4.356 -0.907 8.774 -2.086 -0.115 -1.138 H11 JLT 31 JLT H12 H12 H 0 1 N N N 6.487 -0.898 10.944 -2.545 -1.599 1.491 H12 JLT 32 JLT H13 H13 H 0 1 N N N 5.850 -2.522 8.470 -1.943 -2.648 -1.315 H13 JLT 33 JLT H14 H14 H 0 1 N N N 4.507 -1.880 11.767 -4.432 -2.391 0.259 H14 JLT 34 JLT H15 H15 H 0 1 N N N 7.256 4.902 5.109 4.805 -0.761 -1.570 H15 JLT 35 JLT H16 H16 H 0 1 N N N 5.582 1.826 4.607 5.431 1.994 -0.161 H16 JLT 36 JLT H17 H17 H 0 1 N N N 3.063 1.476 13.407 -3.394 2.633 -1.780 H17 JLT 37 JLT H18 H18 H 0 1 N N N 1.995 -1.617 12.070 -2.441 4.634 0.468 H18 JLT 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JLT O15 P10 DOUB N N 1 JLT O14 P10 SING N N 2 JLT P10 O12 SING N N 3 JLT P10 C9 SING N N 4 JLT C8 C9 SING N N 5 JLT C8 C5 SING N N 6 JLT O1 C4 SING N N 7 JLT C5 C4 SING N N 8 JLT C5 O6 SING N N 9 JLT C4 C3 SING N N 10 JLT O6 C1 SING N N 11 JLT C3 O2 SING N N 12 JLT C3 C2 SING N N 13 JLT C1 C7 SING N N 14 JLT C1 C2 SING N N 15 JLT C7 P11 SING N N 16 JLT C2 O3 SING N N 17 JLT O18 P11 DOUB N N 18 JLT P11 O17 SING N N 19 JLT P11 O16 SING N N 20 JLT C4 H1 SING N N 21 JLT C5 H2 SING N N 22 JLT C7 H3 SING N N 23 JLT C7 H4 SING N N 24 JLT C8 H5 SING N N 25 JLT C8 H6 SING N N 26 JLT O2 H7 SING N N 27 JLT C9 H8 SING N N 28 JLT C9 H9 SING N N 29 JLT O1 H10 SING N N 30 JLT C1 H11 SING N N 31 JLT C2 H12 SING N N 32 JLT C3 H13 SING N N 33 JLT O3 H14 SING N N 34 JLT O12 H15 SING N N 35 JLT O14 H16 SING N N 36 JLT O16 H17 SING N N 37 JLT O17 H18 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JLT InChI InChI 1.03 "InChI=1S/C8H18O10P2/c9-6-4(1-2-19(12,13)14)18-5(3-20(15,16)17)7(10)8(6)11/h4-11H,1-3H2,(H2,12,13,14)(H2,15,16,17)/t4-,5+,6-,7+,8+/m0/s1" JLT InChIKey InChI 1.03 BSBIMNCSLGLJLO-BZCSJUTBSA-N JLT SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H](O)[C@H](CC[P](O)(O)=O)O[C@H](C[P](O)(O)=O)[C@H]1O" JLT SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](CC[P](O)(O)=O)O[CH](C[P](O)(O)=O)[CH]1O" JLT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CP(=O)(O)O)[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CP(=O)(O)O)O)O)O" JLT SMILES "OpenEye OEToolkits" 2.0.7 "C(CP(=O)(O)O)C1C(C(C(C(O1)CP(=O)(O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id JLT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{S},4~{R},5~{R},6~{S})-3,4,5-tris(oxidanyl)-6-(2-phosphonoethyl)oxan-2-yl]methylphosphonic acid" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support JLT "CARBOHYDRATE ISOMER" D PDB ? JLT "CARBOHYDRATE RING" pyranose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JLT "Create component" 2019-03-11 RCSB JLT "Initial release" 2020-04-01 RCSB JLT "Other modification" 2020-07-03 RCSB JLT "Modify name" 2020-07-17 RCSB JLT "Modify synonyms" 2020-07-17 RCSB JLT "Modify internal type" 2020-07-17 RCSB JLT "Modify linking type" 2020-07-17 RCSB ##