data_JLU # _chem_comp.id JLU _chem_comp.name "9-[(1~{S},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-2-azanyl-3~{H}-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H25 F N10 O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-05 _chem_comp.pdbx_modified_date 2023-10-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 658.430 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JLU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZKU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JLU C2 C1 C 0 1 Y N N 29.995 17.749 56.635 9.147 1.517 0.516 C2 JLU 1 JLU N1 N1 N 0 1 Y N N 29.993 16.616 55.931 9.913 0.968 -0.409 N1 JLU 2 JLU C5 C2 C 0 1 Y N N 29.013 17.843 54.170 8.138 -0.449 -1.008 C5 JLU 3 JLU C6 C3 C 0 1 Y N N 29.501 16.626 54.671 9.460 -0.008 -1.188 C6 JLU 4 JLU C12 C4 C 0 1 N N N 31.493 17.650 45.844 -9.413 -0.129 0.468 C12 JLU 5 JLU C16 C5 C 0 1 N N N 32.109 16.844 47.976 -9.012 0.919 -1.559 C16 JLU 6 JLU C14 C6 C 0 1 Y N N 31.907 19.202 47.506 -7.147 0.153 -0.167 C14 JLU 7 JLU C15 C7 C 0 1 Y N N 32.191 18.224 48.421 -7.570 0.772 -1.337 C15 JLU 8 JLU C18 C8 C 0 1 Y N N 32.413 20.104 49.420 -5.406 0.745 -1.372 C18 JLU 9 JLU C21 C9 C 0 1 N N R 28.418 21.352 54.803 4.989 -0.147 0.808 C21 JLU 10 JLU C22 C10 C 0 1 N N R 29.758 22.075 54.791 4.192 1.026 0.217 C22 JLU 11 JLU C23 C11 C 0 1 N N R 29.781 22.525 53.344 2.723 0.566 0.248 C23 JLU 12 JLU C24 C12 C 0 1 N N R 28.390 23.102 53.264 2.758 -0.840 0.867 C24 JLU 13 JLU C25 C13 C 0 1 N N N 27.883 23.364 51.866 1.904 -1.796 0.032 C25 JLU 14 JLU C31 C14 C 0 1 N N R 31.819 21.693 47.470 -4.894 -0.407 0.814 C31 JLU 15 JLU C32 C15 C 0 1 N N N 30.334 21.979 47.313 -4.008 -1.492 0.195 C32 JLU 16 JLU C33 C16 C 0 1 N N S 30.057 22.447 48.725 -2.553 -1.025 0.302 C33 JLU 17 JLU C34 C17 C 0 1 N N R 31.087 23.543 48.867 -2.533 0.264 1.129 C34 JLU 18 JLU C35 C18 C 0 1 N N N 31.325 24.002 50.283 -1.781 1.356 0.368 C35 JLU 19 JLU C36 C19 C 0 1 N N N 32.341 22.903 48.249 -3.984 0.697 1.358 C36 JLU 20 JLU C4 C20 C 0 1 Y N N 29.080 18.935 55.018 7.365 0.163 -0.007 C4 JLU 21 JLU C8 C21 C 0 1 Y N N 28.199 19.478 53.090 6.183 -1.388 -1.035 C8 JLU 22 JLU F22 F1 F 0 1 N N N 29.684 23.192 55.624 4.359 2.172 1.002 F22 JLU 23 JLU N11 N2 N 0 1 N N N 31.750 16.630 46.660 -9.856 0.451 -0.626 N11 JLU 24 JLU N12 N3 N 0 1 N N N 31.149 17.437 44.575 -10.322 -0.592 1.382 N12 JLU 25 JLU N13 N4 N 0 1 N N N 31.558 18.959 46.219 -8.089 -0.292 0.724 N13 JLU 26 JLU N17 N5 N 0 1 Y N N 32.513 18.802 49.640 -6.463 1.114 -2.037 N17 JLU 27 JLU N19 N6 N 0 1 Y N N 32.051 20.397 48.131 -5.787 0.145 -0.207 N19 JLU 28 JLU N3 N7 N 0 1 Y N N 29.561 18.954 56.266 7.905 1.133 0.724 N3 JLU 29 JLU N6 N8 N 0 1 N N N 29.505 15.485 53.976 10.270 -0.577 -2.155 N6 JLU 30 JLU N7 N9 N 0 1 Y N N 28.454 18.199 52.953 7.358 -1.389 -1.595 N7 JLU 31 JLU N9 N10 N 0 1 Y N N 28.550 19.985 54.322 6.138 -0.449 -0.049 N9 JLU 32 JLU O16 O1 O 0 1 N N N 32.342 15.885 48.713 -9.436 1.456 -2.571 O16 JLU 33 JLU O23 O2 O 0 1 N N N 30.797 23.539 53.178 1.943 1.447 1.059 O23 JLU 34 JLU O24 O3 O 0 1 N N N 27.595 22.081 53.909 4.118 -1.279 0.868 O24 JLU 35 JLU O25 O4 O 0 1 N N N 27.936 22.145 51.100 0.841 -2.311 0.836 O25 JLU 36 JLU O33 O5 O 0 1 N N N 28.722 22.989 48.856 -1.770 -2.028 0.951 O33 JLU 37 JLU O35 O6 O 0 1 N N N 31.972 22.962 51.039 -0.662 1.792 1.142 O35 JLU 38 JLU P25 P1 P 0 1 N N N 27.580 22.137 49.555 -0.563 -2.805 0.223 P25 JLU 39 JLU P35 P2 P 0 1 N N N 32.215 23.138 52.593 0.713 2.311 0.483 P35 JLU 40 JLU O25A O7 O 0 0 N N N 26.261 22.815 49.344 -0.724 -4.390 0.460 O25A JLU 41 JLU O25B O8 O 0 0 N N N 27.624 20.728 49.048 -0.595 -2.518 -1.229 O25B JLU 42 JLU O35A O9 O 0 0 N N N 33.177 24.262 52.820 0.913 3.738 0.818 O35A JLU 43 JLU O35B O10 O 0 0 N N N 32.645 21.830 53.181 0.639 2.140 -1.116 O35B JLU 44 JLU H1 H1 H 0 1 N N N 30.401 17.681 57.634 9.556 2.308 1.127 H1 JLU 45 JLU H2 H2 H 0 1 N N N 32.597 20.854 50.175 -4.386 0.891 -1.693 H2 JLU 46 JLU H3 H3 H 0 1 N N N 28.003 21.363 55.822 5.332 0.108 1.811 H3 JLU 47 JLU H4 H4 H 0 1 N N N 30.592 21.397 55.025 4.507 1.220 -0.808 H4 JLU 48 JLU H5 H5 H 0 1 N N N 29.911 21.676 52.657 2.318 0.525 -0.763 H5 JLU 49 JLU H6 H6 H 0 1 N N N 28.350 24.035 53.845 2.380 -0.803 1.888 H6 JLU 50 JLU H7 H7 H 0 1 N N N 28.512 24.127 51.385 1.487 -1.260 -0.821 H7 JLU 51 JLU H8 H8 H 0 1 N N N 26.844 23.722 51.914 2.523 -2.619 -0.324 H8 JLU 52 JLU H9 H9 H 0 1 N N N 32.287 21.686 46.474 -5.482 -0.833 1.627 H9 JLU 53 JLU H10 H10 H 0 1 N N N 30.138 22.764 46.568 -4.136 -2.428 0.738 H10 JLU 54 JLU H11 H11 H 0 1 N N N 29.761 21.076 47.054 -4.274 -1.632 -0.852 H11 JLU 55 JLU H12 H12 H 0 1 N N N 30.243 21.639 49.448 -2.155 -0.830 -0.693 H12 JLU 56 JLU H13 H13 H 0 1 N N N 30.787 24.404 48.252 -2.049 0.080 2.087 H13 JLU 57 JLU H14 H14 H 0 1 N N N 31.966 24.896 50.273 -1.431 0.960 -0.586 H14 JLU 58 JLU H15 H15 H 0 1 N N N 30.361 24.247 50.753 -2.448 2.199 0.187 H15 JLU 59 JLU H16 H16 H 0 1 N N N 33.041 22.585 49.035 -4.179 1.630 0.829 H16 JLU 60 JLU H17 H17 H 0 1 N N N 32.845 23.611 47.574 -4.165 0.833 2.424 H17 JLU 61 JLU H18 H18 H 0 1 N N N 27.755 20.078 52.310 5.365 -2.037 -1.312 H18 JLU 62 JLU H19 H19 H 0 1 N N N 31.081 16.503 44.225 -10.016 -1.027 2.193 H19 JLU 63 JLU H20 H20 H 0 1 N N N 30.958 18.212 43.972 -11.272 -0.486 1.217 H20 JLU 64 JLU H21 H21 H 0 1 N N N 31.359 19.701 45.579 -7.807 -0.726 1.545 H21 JLU 65 JLU H22 H22 H 0 1 N N N 29.898 14.755 54.535 9.927 -1.289 -2.718 H22 JLU 66 JLU H23 H23 H 0 1 N N N 28.567 15.245 53.725 11.181 -0.264 -2.270 H23 JLU 67 JLU H24 H24 H 0 1 N N N 25.662 22.217 48.912 -0.029 -4.922 0.048 H24 JLU 68 JLU H25 H25 H 0 1 N N N 33.484 21.937 53.614 -0.081 2.634 -1.532 H25 JLU 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JLU N12 C12 SING N N 1 JLU C12 N13 SING N N 2 JLU C12 N11 DOUB N N 3 JLU N13 C14 SING N N 4 JLU N11 C16 SING N N 5 JLU C32 C31 SING N N 6 JLU C32 C33 SING N N 7 JLU C31 N19 SING N N 8 JLU C31 C36 SING N N 9 JLU C14 N19 SING Y N 10 JLU C14 C15 DOUB Y N 11 JLU C16 C15 SING N N 12 JLU C16 O16 DOUB N N 13 JLU N19 C18 SING Y N 14 JLU C36 C34 SING N N 15 JLU C15 N17 SING Y N 16 JLU C33 O33 SING N N 17 JLU C33 C34 SING N N 18 JLU O33 P25 SING N N 19 JLU C34 C35 SING N N 20 JLU O25B P25 DOUB N N 21 JLU O25A P25 SING N N 22 JLU C18 N17 DOUB Y N 23 JLU P25 O25 SING N N 24 JLU C35 O35 SING N N 25 JLU O35 P35 SING N N 26 JLU O25 C25 SING N N 27 JLU C25 C24 SING N N 28 JLU P35 O35A DOUB N N 29 JLU P35 O23 SING N N 30 JLU P35 O35B SING N N 31 JLU N7 C8 DOUB Y N 32 JLU N7 C5 SING Y N 33 JLU C8 N9 SING Y N 34 JLU O23 C23 SING N N 35 JLU C24 C23 SING N N 36 JLU C24 O24 SING N N 37 JLU C23 C22 SING N N 38 JLU O24 C21 SING N N 39 JLU N6 C6 SING N N 40 JLU C5 C6 DOUB Y N 41 JLU C5 C4 SING Y N 42 JLU N9 C21 SING N N 43 JLU N9 C4 SING Y N 44 JLU C6 N1 SING Y N 45 JLU C22 C21 SING N N 46 JLU C22 F22 SING N N 47 JLU C4 N3 DOUB Y N 48 JLU N1 C2 DOUB Y N 49 JLU N3 C2 SING Y N 50 JLU C2 H1 SING N N 51 JLU C18 H2 SING N N 52 JLU C21 H3 SING N N 53 JLU C22 H4 SING N N 54 JLU C23 H5 SING N N 55 JLU C24 H6 SING N N 56 JLU C25 H7 SING N N 57 JLU C25 H8 SING N N 58 JLU C31 H9 SING N N 59 JLU C32 H10 SING N N 60 JLU C32 H11 SING N N 61 JLU C33 H12 SING N N 62 JLU C34 H13 SING N N 63 JLU C35 H14 SING N N 64 JLU C35 H15 SING N N 65 JLU C36 H16 SING N N 66 JLU C36 H17 SING N N 67 JLU C8 H18 SING N N 68 JLU N12 H19 SING N N 69 JLU N12 H20 SING N N 70 JLU N13 H21 SING N N 71 JLU N6 H22 SING N N 72 JLU N6 H23 SING N N 73 JLU O25A H24 SING N N 74 JLU O35B H25 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JLU InChI InChI 1.06 "InChI=1S/C21H25FN10O10P2/c22-12-15-11(40-20(12)32-7-27-13-16(23)25-5-26-17(13)32)4-39-43(34,35)41-10-2-9(1-8(10)3-38-44(36,37)42-15)31-6-28-14-18(31)29-21(24)30-19(14)33/h5-12,15,20H,1-4H2,(H,34,35)(H,36,37)(H2,23,25,26)(H3,24,29,30,33)/t8-,9-,10+,11-,12-,15-,20-/m1/s1" JLU InChIKey InChI 1.06 MBBQTFXWIHOYHK-HRPBTLETSA-N JLU SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2ncn([C@@H]3C[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4C3)n6cnc7c(N)ncnc67)c2N1" JLU SMILES CACTVS 3.385 "NC1=NC(=O)c2ncn([CH]3C[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4C3)n6cnc7c(N)ncnc67)c2N1" JLU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@H]5C[C@@H](C[C@@H]5COP(=O)(O4)O)n6cnc7c6NC(=NC7=O)N)O)F)N" JLU SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5CC(CC5COP(=O)(O4)O)n6cnc7c6NC(=NC7=O)N)O)F)N" # _pdbx_chem_comp_identifier.comp_id JLU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{S},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-2-azanyl-3~{H}-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JLU "Create component" 2022-05-05 PDBE JLU "Modify descriptor" 2022-08-22 RCSB JLU "Initial release" 2023-10-25 RCSB #