data_JM4 # _chem_comp.id JM4 _chem_comp.name "N~5~-{3-[(1-methylethyl)sulfanyl]propanimidoyl}-L-ornithine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H23 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 261.384 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JM4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3JT8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JM4 C C C 0 1 N N N 17.950 -1.709 57.862 -6.370 -0.336 -0.076 C JM4 1 JM4 N N N 0 1 N N N 16.553 -0.414 56.359 -5.203 1.770 0.254 N JM4 2 JM4 C1 C1 C 0 1 N N N 11.827 -0.904 59.316 1.045 -0.092 0.123 C1 JM4 3 JM4 C2 C2 C 0 1 N N N 11.395 -0.494 60.519 2.293 0.637 -0.304 C2 JM4 4 JM4 C3 C3 C 0 1 N N N 10.279 0.495 60.607 3.523 -0.115 0.208 C3 JM4 5 JM4 S4 S4 S 0 1 N N N 10.557 1.760 59.407 5.025 0.762 -0.307 S4 JM4 6 JM4 C5 C5 C 0 1 N N N 11.223 3.119 60.303 6.353 -0.265 0.382 C5 JM4 7 JM4 C6 C6 C 0 1 N N N 12.204 3.876 59.404 6.342 -1.636 -0.297 C6 JM4 8 JM4 C7 C7 C 0 1 N N N 11.878 2.562 61.570 7.702 0.415 0.137 C7 JM4 9 JM4 CA CA C 0 1 N N S 17.080 -0.465 57.714 -5.128 0.455 -0.397 CA JM4 10 JM4 CB CB C 0 1 N N N 15.934 -0.487 58.727 -3.898 -0.297 0.115 CB JM4 11 JM4 CD CD C 0 1 N N N 13.793 0.635 59.463 -1.400 -0.309 0.193 CD JM4 12 JM4 NE NE N 0 1 N N N 12.974 -0.403 58.847 -0.187 0.399 -0.222 NE JM4 13 JM4 CG CG C 0 1 N N N 15.064 0.763 58.625 -2.630 0.443 -0.319 CG JM4 14 JM4 NH NH N 0 1 N N N 11.091 -1.794 58.658 1.136 -1.179 0.817 NH JM4 15 JM4 OA1 OA1 O 0 1 N N N 18.637 -1.921 58.880 -6.723 -1.373 -0.851 OA1 JM4 16 JM4 OA2 OA2 O 0 1 N N N 17.991 -2.528 56.925 -7.044 -0.039 0.881 OA2 JM4 17 JM4 HN HN H 0 1 N N N 15.981 0.399 56.254 -5.276 1.675 1.255 HN JM4 18 JM4 HNA HNA H 0 1 N N N 17.311 -0.375 55.708 -4.412 2.344 0.002 HNA JM4 19 JM4 H2 H2 H 0 1 N N N 11.048 -1.396 61.044 2.327 0.691 -1.392 H2 JM4 20 JM4 H2A H2A H 0 1 N N N 12.260 -0.026 61.012 2.285 1.645 0.110 H2A JM4 21 JM4 H3 H3 H 0 1 N N N 9.320 -0.006 60.406 3.489 -0.170 1.296 H3 JM4 22 JM4 H3A H3A H 0 1 N N N 10.251 0.936 61.614 3.531 -1.123 -0.206 H3A JM4 23 JM4 H5 H5 H 0 1 N N N 10.449 3.840 60.605 6.198 -0.389 1.454 H5 JM4 24 JM4 H6 H6 H 0 1 N N N 12.626 4.728 59.957 7.140 -2.253 0.117 H6 JM4 25 JM4 H6A H6A H 0 1 N N N 13.016 3.200 59.097 5.381 -2.120 -0.123 H6A JM4 26 JM4 H6B H6B H 0 1 N N N 11.675 4.243 58.512 6.497 -1.512 -1.369 H6B JM4 27 JM4 H7 H7 H 0 1 N N N 12.306 3.389 62.156 7.710 1.391 0.621 H7 JM4 28 JM4 H7A H7A H 0 1 N N N 11.122 2.038 62.174 8.500 -0.202 0.551 H7A JM4 29 JM4 H7B H7B H 0 1 N N N 12.676 1.859 61.291 7.857 0.539 -0.934 H7B JM4 30 JM4 HA HA H 0 1 N N N 17.689 0.430 57.908 -5.050 0.587 -1.476 HA JM4 31 JM4 HB HB H 0 1 N N N 15.307 -1.370 58.532 -3.932 -0.351 1.203 HB JM4 32 JM4 HBA HBA H 0 1 N N N 16.359 -0.539 59.740 -3.890 -1.305 -0.299 HBA JM4 33 JM4 HD HD H 0 1 N N N 14.045 0.357 60.497 -1.392 -1.318 -0.221 HD JM4 34 JM4 HDA HDA H 0 1 N N N 13.249 1.591 59.478 -1.434 -0.364 1.281 HDA JM4 35 JM4 HNE HNE H 0 1 N N N 13.306 -0.780 57.982 -0.256 1.215 -0.742 HNE JM4 36 JM4 HG HG H 0 1 N N N 15.641 1.626 58.988 -2.596 0.497 -1.407 HG JM4 37 JM4 HGA HGA H 0 1 N N N 14.780 0.911 57.573 -2.638 1.451 0.095 HGA JM4 38 JM4 HNH HNH H 0 1 N N N 10.272 -2.055 59.170 2.008 -1.527 1.061 HNH JM4 39 JM4 HOA1 HOA1 H 0 0 N N N 19.119 -2.733 58.774 -7.528 -1.850 -0.605 HOA1 JM4 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JM4 OA2 C DOUB N N 1 JM4 CA C SING N N 2 JM4 C OA1 SING N N 3 JM4 N CA SING N N 4 JM4 N HN SING N N 5 JM4 N HNA SING N N 6 JM4 NH C1 DOUB N N 7 JM4 NE C1 SING N N 8 JM4 C1 C2 SING N N 9 JM4 C2 C3 SING N N 10 JM4 C2 H2 SING N N 11 JM4 C2 H2A SING N N 12 JM4 S4 C3 SING N N 13 JM4 C3 H3 SING N N 14 JM4 C3 H3A SING N N 15 JM4 S4 C5 SING N N 16 JM4 C6 C5 SING N N 17 JM4 C5 C7 SING N N 18 JM4 C5 H5 SING N N 19 JM4 C6 H6 SING N N 20 JM4 C6 H6A SING N N 21 JM4 C6 H6B SING N N 22 JM4 C7 H7 SING N N 23 JM4 C7 H7A SING N N 24 JM4 C7 H7B SING N N 25 JM4 CA CB SING N N 26 JM4 CA HA SING N N 27 JM4 CG CB SING N N 28 JM4 CB HB SING N N 29 JM4 CB HBA SING N N 30 JM4 CG CD SING N N 31 JM4 NE CD SING N N 32 JM4 CD HD SING N N 33 JM4 CD HDA SING N N 34 JM4 NE HNE SING N N 35 JM4 CG HG SING N N 36 JM4 CG HGA SING N N 37 JM4 NH HNH SING N N 38 JM4 OA1 HOA1 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JM4 SMILES ACDLabs 11.02 "O=C(O)C(N)CCCNC(=[N@H])CCSC(C)C" JM4 SMILES_CANONICAL CACTVS 3.352 "CC(C)SCCC(=N)NCCC[C@H](N)C(O)=O" JM4 SMILES CACTVS 3.352 "CC(C)SCCC(=N)NCCC[CH](N)C(O)=O" JM4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(/CCSC(C)C)\NCCC[C@@H](C(=O)O)N" JM4 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)SCCC(=N)NCCCC(C(=O)O)N" JM4 InChI InChI 1.03 "InChI=1S/C11H23N3O2S/c1-8(2)17-7-5-10(13)14-6-3-4-9(12)11(15)16/h8-9H,3-7,12H2,1-2H3,(H2,13,14)(H,15,16)/t9-/m0/s1" JM4 InChIKey InChI 1.03 YRGYNHWJLFBYTL-VIFPVBQESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JM4 "SYSTEMATIC NAME" ACDLabs 11.02 "N~5~-[(1Z)-3-(propan-2-ylsulfanyl)propanimidoyl]-L-ornithine" JM4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-5-(3-propan-2-ylsulfanylpropanimidoylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JM4 "Create component" 2009-09-17 RCSB JM4 "Modify descriptor" 2011-06-04 RCSB #