data_JM5 # _chem_comp.id JM5 _chem_comp.name "N~5~-[2-(propylsulfanyl)ethanimidoyl]-L-ornithine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H21 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 247.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JM5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3JT7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JM5 C C C 0 1 N N N 17.702 -1.645 57.600 -5.934 0.207 0.123 C JM5 1 JM5 N N N 0 1 N N N 16.329 -0.442 55.964 -4.698 -1.802 -0.463 N JM5 2 JM5 C1 C1 C 0 1 N N N 11.535 -0.721 58.774 1.484 0.235 -0.077 C1 JM5 3 JM5 C2 C2 C 0 1 N N N 10.833 0.106 59.579 2.756 -0.500 0.261 C2 JM5 4 JM5 S3 S3 S 0 1 N N N 10.490 1.768 59.074 4.184 0.508 -0.224 S3 JM5 5 JM5 C4 C4 C 0 1 N N N 10.871 2.905 60.361 5.595 -0.526 0.254 C4 JM5 6 JM5 C5 C5 C 0 1 N N N 10.903 2.156 61.685 6.898 0.196 -0.095 C5 JM5 7 JM5 C6 C6 C 0 1 N N N 12.322 1.775 62.020 8.089 -0.676 0.308 C6 JM5 8 JM5 CA CA C 0 1 N N S 16.873 -0.406 57.309 -4.666 -0.576 0.347 CA JM5 9 JM5 CB CB C 0 1 N N N 15.733 -0.315 58.342 -3.462 0.274 -0.062 CB JM5 10 JM5 CD CD C 0 1 N N N 13.462 0.593 58.786 -0.966 0.379 -0.128 CD JM5 11 JM5 NE NE N 0 1 N N N 12.806 -0.449 58.415 0.270 -0.336 0.200 NE JM5 12 JM5 CG CG C 0 1 N N N 14.846 0.921 58.238 -2.171 -0.472 0.280 CG JM5 13 JM5 NH NH N 0 1 N N N 10.942 -1.763 58.376 1.540 1.403 -0.628 NH JM5 14 JM5 OA1 OA1 O 0 1 N N N 17.883 -2.514 56.730 -6.604 0.003 -0.862 OA1 JM5 15 JM5 OA2 OA2 O 0 1 N N N 18.183 -1.822 58.731 -6.321 1.127 1.020 OA2 JM5 16 JM5 HN HN H 0 1 N N N 15.789 0.384 55.800 -5.447 -2.411 -0.169 HN JM5 17 JM5 HNA HNA H 0 1 N N N 17.078 -0.487 55.303 -4.775 -1.584 -1.446 HNA JM5 18 JM5 H2 H2 H 0 1 N N N 9.854 -0.374 59.727 2.792 -0.689 1.334 H2 JM5 19 JM5 H2A H2A H 0 1 N N N 11.412 0.186 60.511 2.782 -1.448 -0.276 H2A JM5 20 JM5 H4 H4 H 0 1 N N N 11.852 3.364 60.171 5.561 -0.715 1.327 H4 JM5 21 JM5 H4A H4A H 0 1 N N N 10.104 3.692 60.399 5.550 -1.474 -0.283 H4A JM5 22 JM5 H5 H5 H 0 1 N N N 10.501 2.802 62.480 6.933 0.384 -1.168 H5 JM5 23 JM5 H5A H5A H 0 1 N N N 10.290 1.246 61.605 6.944 1.143 0.442 H5A JM5 24 JM5 H6 H6 H 0 1 N N N 12.341 1.234 62.978 8.054 -0.865 1.381 H6 JM5 25 JM5 H6A H6A H 0 1 N N N 12.725 1.129 61.226 8.043 -1.624 -0.229 H6A JM5 26 JM5 H6B H6B H 0 1 N N N 12.936 2.684 62.101 9.017 -0.162 0.060 H6B JM5 27 JM5 HA HA H 0 1 N N N 17.519 0.481 57.383 -4.583 -0.840 1.401 HA JM5 28 JM5 HB HB H 0 1 N N N 15.089 -1.196 58.202 -3.498 0.463 -1.135 HB JM5 29 JM5 HBA HBA H 0 1 N N N 16.193 -0.308 59.341 -3.487 1.222 0.475 HBA JM5 30 JM5 HD HD H 0 1 N N N 12.829 1.450 58.513 -0.992 1.327 0.409 HD JM5 31 JM5 HG HG H 0 1 N N N 15.288 1.742 58.822 -2.135 -0.661 1.353 HG JM5 32 JM5 HGA HGA H 0 1 N N N 14.762 1.226 57.185 -2.145 -1.420 -0.257 HGA JM5 33 JM5 HNH HNH H 0 1 N N N 11.524 -2.324 57.788 0.721 1.876 -0.846 HNH JM5 34 JM5 HOA2 HOA2 H 0 0 N N N 18.645 -2.652 58.753 -7.141 1.605 0.833 HOA2 JM5 35 JM5 H20 H20 H 0 1 N N N 13.596 0.482 59.872 -1.003 0.568 -1.201 H20 JM5 36 JM5 H21 H21 H 0 1 N N N 13.271 -1.103 57.819 0.228 -1.212 0.613 H21 JM5 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JM5 C OA2 SING N N 1 JM5 N CA SING N N 2 JM5 N HN SING N N 3 JM5 N HNA SING N N 4 JM5 C1 C2 SING N N 5 JM5 C2 H2 SING N N 6 JM5 C2 H2A SING N N 7 JM5 S3 C2 SING N N 8 JM5 S3 C4 SING N N 9 JM5 C4 C5 SING N N 10 JM5 C4 H4 SING N N 11 JM5 C4 H4A SING N N 12 JM5 C5 C6 SING N N 13 JM5 C5 H5 SING N N 14 JM5 C5 H5A SING N N 15 JM5 C6 H6 SING N N 16 JM5 C6 H6A SING N N 17 JM5 C6 H6B SING N N 18 JM5 CA C SING N N 19 JM5 CA CB SING N N 20 JM5 CA HA SING N N 21 JM5 CB HB SING N N 22 JM5 CB HBA SING N N 23 JM5 CD HD SING N N 24 JM5 NE C1 SING N N 25 JM5 NE CD SING N N 26 JM5 CG CB SING N N 27 JM5 CG CD SING N N 28 JM5 CG HG SING N N 29 JM5 CG HGA SING N N 30 JM5 NH C1 DOUB N N 31 JM5 NH HNH SING N N 32 JM5 OA1 C DOUB N N 33 JM5 OA2 HOA2 SING N N 34 JM5 CD H20 SING N N 35 JM5 NE H21 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JM5 SMILES ACDLabs 11.02 "O=C(O)C(N)CCCNC(=[N@H])CSCCC" JM5 SMILES_CANONICAL CACTVS 3.352 "CCCSCC(=N)NCCC[C@H](N)C(O)=O" JM5 SMILES CACTVS 3.352 "CCCSCC(=N)NCCC[CH](N)C(O)=O" JM5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "[H]/N=C(/CSCCC)\NCCC[C@@H](C(=O)O)N" JM5 SMILES "OpenEye OEToolkits" 1.7.0 "CCCSCC(=N)NCCCC(C(=O)O)N" JM5 InChI InChI 1.03 "InChI=1S/C10H21N3O2S/c1-2-6-16-7-9(12)13-5-3-4-8(11)10(14)15/h8H,2-7,11H2,1H3,(H2,12,13)(H,14,15)/t8-/m0/s1" JM5 InChIKey InChI 1.03 RLVQEZKGBMYDBZ-QMMMGPOBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JM5 "SYSTEMATIC NAME" ACDLabs 11.02 "N~5~-[(1Z)-2-(propylsulfanyl)ethanimidoyl]-L-ornithine" JM5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-2-azanyl-5-(2-propylsulfanylethanimidoylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JM5 "Create component" 2009-09-17 RCSB JM5 "Modify descriptor" 2011-06-04 RCSB #