data_JMF # _chem_comp.id JMF _chem_comp.name "(3S)-1-(iminomethyl)-N-[1-[4-(pent-4-ynylcarbamoyl)phenyl]imidazol-4-yl]pyrrolidine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3S)-1-cyano-N-[1-[4-(pent-4-ynylcarbamoyl)phenyl]imidazol-4-yl]pyrrolidine-3-carboxamide, reacted form of" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.454 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JMF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZM0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JMF C13 C1 C 0 1 N N N N N N -38.045 -6.609 9.833 9.574 -0.725 0.296 C13 JMF 1 JMF C15 C2 C 0 1 Y N N N N N -32.116 -14.259 8.078 -1.597 0.639 -0.341 C15 JMF 2 JMF C20 C3 C 0 1 N N N N N N -29.985 -16.580 7.813 -4.421 0.165 -0.570 C20 JMF 3 JMF C21 C4 C 0 1 N N S N N N -29.205 -17.820 7.670 -5.908 -0.046 -0.688 C21 JMF 4 JMF C24 C5 C 0 1 N N N N N N -27.594 -19.005 8.784 -7.678 -1.644 -0.266 C24 JMF 5 JMF C26 C6 C 0 1 N N N N N N -29.944 -18.982 8.425 -6.625 0.304 0.640 C26 JMF 6 JMF C28 C7 C 0 1 N N N N N N -38.082 -5.481 7.323 11.453 1.116 0.578 C28 JMF 7 JMF C01 C8 C 0 1 Y N N N N N -34.263 -9.545 9.921 3.361 -0.569 -0.105 C01 JMF 8 JMF C02 C9 C 0 1 Y N N N N N -32.770 -9.850 9.659 2.205 -1.341 -0.248 C02 JMF 9 JMF C03 C10 C 0 1 Y N N N N N -32.362 -11.154 8.937 0.971 -0.732 -0.278 C03 JMF 10 JMF C04 C11 C 0 1 Y N N N N N -33.459 -12.158 8.478 0.873 0.651 -0.166 C04 JMF 11 JMF C05 C12 C 0 1 Y N N N N N -34.920 -11.856 8.728 2.021 1.423 -0.023 C05 JMF 12 JMF C06 C13 C 0 1 Y N N N N N -35.335 -10.528 9.465 3.259 0.820 0.013 C06 JMF 13 JMF C08 C14 C 0 1 N N N N N N -34.678 -8.250 10.635 4.686 -1.219 -0.072 C08 JMF 14 JMF C11 C15 C 0 1 N N N N N N -36.468 -6.858 11.784 7.115 -1.117 0.099 C11 JMF 15 JMF C12 C16 C 0 1 N N N N N N -37.039 -5.865 10.713 8.201 -0.052 0.262 C12 JMF 16 JMF C14 C17 C 0 1 N N N N N N -38.067 -5.978 8.432 10.619 0.299 0.453 C14 JMF 17 JMF C16 C18 C 0 1 Y N N N N N -32.143 -15.297 7.142 -2.539 1.607 -0.324 C16 JMF 18 JMF C18 C19 C 0 1 Y N N N N N -33.731 -13.896 6.686 -0.630 2.599 -0.111 C18 JMF 19 JMF C23 C20 C 0 1 N N N N N N -27.857 -17.735 8.408 -6.246 -1.553 -0.836 C23 JMF 20 JMF C27 C21 C 0 1 N N N N N N -29.185 -21.229 8.955 -9.019 -0.184 1.301 C27 JMF 21 JMF N07 N1 N 0 1 Y N N N N N -33.094 -13.423 7.769 -0.381 1.267 -0.202 N07 JMF 22 JMF N09 N2 N 0 1 N N N N N N -36.063 -8.091 11.109 5.799 -0.472 0.066 N09 JMF 23 JMF N17 N3 N 0 1 Y N N N N N -33.121 -15.072 6.313 -1.919 2.791 -0.184 N17 JMF 24 JMF N19 N4 N 0 1 N N N N N N -31.251 -16.481 7.082 -3.925 1.411 -0.433 N19 JMF 25 JMF N25 N5 N 0 1 N N N N N N -28.997 -19.835 8.726 -7.871 -0.484 0.616 N25 JMF 26 JMF N29 N6 N 0 1 N N N N N N -28.151 -21.985 9.262 -10.052 -0.954 1.200 N29 JMF 27 JMF O10 O1 O 0 1 N N N N N N -33.911 -7.402 10.791 4.773 -2.427 -0.169 O10 JMF 28 JMF O22 O2 O 0 1 N N N N N N -29.608 -15.723 8.487 -3.669 -0.787 -0.599 O22 JMF 29 JMF H1 H1 H 0 1 N N N N N N -39.047 -6.539 10.282 9.618 -1.420 1.135 H1 JMF 30 JMF H2 H2 H 0 1 N N N N N N -37.751 -7.666 9.754 9.735 -1.269 -0.635 H2 JMF 31 JMF H3 H3 H 0 1 N N N N N N -31.424 -14.158 8.901 -1.765 -0.424 -0.441 H3 JMF 32 JMF H4 H4 H 0 1 N N N N N N -29.054 -18.087 6.613 -6.318 0.530 -1.517 H4 JMF 33 JMF H5 H5 H 0 1 N N N N N N -26.862 -19.456 8.097 -8.403 -1.616 -1.079 H5 JMF 34 JMF H6 H6 H 0 1 N N N N N N -27.192 -19.018 9.808 -7.793 -2.567 0.302 H6 JMF 35 JMF H7 H7 H 0 1 N N N N N N -30.431 -18.605 9.336 -6.010 0.015 1.492 H7 JMF 36 JMF H8 H8 H 0 1 N N N N N N -30.697 -19.451 7.774 -6.851 1.370 0.679 H8 JMF 37 JMF H9 H9 H 0 1 N N N N N N -38.095 -5.048 6.356 12.198 1.847 0.690 H9 JMF 38 JMF H10 H10 H 0 1 N N N N N N -32.012 -9.151 9.981 2.280 -2.415 -0.335 H10 JMF 39 JMF H11 H11 H 0 1 N N N N N N -31.320 -11.368 8.752 0.077 -1.328 -0.388 H11 JMF 40 JMF H12 H12 H 0 1 N N N N N N -35.679 -12.552 8.401 1.942 2.497 0.063 H12 JMF 41 JMF H13 H13 H 0 1 N N N N N N -36.378 -10.314 9.647 4.150 1.420 0.123 H13 JMF 42 JMF H14 H14 H 0 1 N N N N N N -35.598 -6.405 12.282 7.276 -1.661 -0.832 H14 JMF 43 JMF H15 H15 H 0 1 N N N N N N -37.243 -7.082 12.532 7.158 -1.811 0.938 H15 JMF 44 JMF H16 H16 H 0 1 N N N N N N -36.217 -5.481 10.091 8.040 0.492 1.192 H16 JMF 45 JMF H17 H17 H 0 1 N N N N N N -37.540 -5.026 11.218 8.158 0.643 -0.577 H17 JMF 46 JMF H18 H18 H 0 1 N N N N N N -34.574 -13.435 6.194 0.116 3.372 0.007 H18 JMF 47 JMF H19 H19 H 0 1 N N N N N N -27.071 -17.358 7.738 -6.229 -1.851 -1.884 H19 JMF 48 JMF H20 H20 H 0 1 N N N N N N -27.936 -17.078 9.287 -5.558 -2.162 -0.249 H20 JMF 49 JMF H22 H22 H 0 1 N N N N N N -36.727 -8.826 10.969 5.730 0.493 0.144 H22 JMF 50 JMF H23 H23 H 0 1 N N N N N N -31.529 -17.254 6.511 -4.527 2.172 -0.410 H23 JMF 51 JMF H21 H21 H 0 1 N N N N N N -30.171 -21.663 8.877 -9.061 0.697 1.925 H21 JMF 52 JMF H24 H24 H 0 1 N N N N N N -28.413 -22.941 9.398 -10.865 -0.742 1.684 H24 JMF 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JMF N17 C18 DOUB Y N 1 JMF N17 C16 SING Y N 2 JMF C18 N07 SING Y N 3 JMF N19 C16 SING N N 4 JMF N19 C20 SING N N 5 JMF C16 C15 DOUB Y N 6 JMF C28 C14 TRIP N N 7 JMF C21 C20 SING N N 8 JMF C21 C23 SING N N 9 JMF C21 C26 SING N N 10 JMF N07 C15 SING Y N 11 JMF N07 C04 SING N N 12 JMF C20 O22 DOUB N N 13 JMF C23 C24 SING N N 14 JMF C26 N25 SING N N 15 JMF C14 C13 SING N N 16 JMF C04 C05 DOUB Y N 17 JMF C04 C03 SING Y N 18 JMF N25 C24 SING N N 19 JMF N25 C27 SING N N 20 JMF C05 C06 SING Y N 21 JMF C03 C02 DOUB Y N 22 JMF C27 N29 DOUB N N 23 JMF C06 C01 DOUB Y N 24 JMF C02 C01 SING Y N 25 JMF C13 C12 SING N N 26 JMF C01 C08 SING N N 27 JMF C08 O10 DOUB N N 28 JMF C08 N09 SING N N 29 JMF C12 C11 SING N N 30 JMF N09 C11 SING N N 31 JMF C13 H1 SING N N 32 JMF C13 H2 SING N N 33 JMF C15 H3 SING N N 34 JMF C21 H4 SING N N 35 JMF C24 H5 SING N N 36 JMF C24 H6 SING N N 37 JMF C26 H7 SING N N 38 JMF C26 H8 SING N N 39 JMF C28 H9 SING N N 40 JMF C02 H10 SING N N 41 JMF C03 H11 SING N N 42 JMF C05 H12 SING N N 43 JMF C06 H13 SING N N 44 JMF C11 H14 SING N N 45 JMF C11 H15 SING N N 46 JMF C12 H16 SING N N 47 JMF C12 H17 SING N N 48 JMF C18 H18 SING N N 49 JMF C23 H19 SING N N 50 JMF C23 H20 SING N N 51 JMF N09 H22 SING N N 52 JMF N19 H23 SING N N 53 JMF C27 H21 SING N N 54 JMF N29 H24 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JMF InChI InChI 1.06 "InChI=1S/C21H24N6O2/c1-2-3-4-10-23-20(28)16-5-7-18(8-6-16)27-13-19(24-15-27)25-21(29)17-9-11-26(12-17)14-22/h1,5-8,13-15,17,22H,3-4,9-12H2,(H,23,28)(H,25,29)/b22-14+/t17-/m0/s1" JMF InChIKey InChI 1.06 KKFJHFIPJQGQCG-NIZGNDASSA-N JMF SMILES_CANONICAL CACTVS 3.385 "N=CN1CC[C@@H](C1)C(=O)Nc2cn(cn2)c3ccc(cc3)C(=O)NCCCC#C" JMF SMILES CACTVS 3.385 "N=CN1CC[CH](C1)C(=O)Nc2cn(cn2)c3ccc(cc3)C(=O)NCCCC#C" JMF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/N1CC[C@@H](C1)C(=O)Nc2cn(cn2)c3ccc(cc3)C(=O)NCCCC#C" JMF SMILES "OpenEye OEToolkits" 2.0.7 "C#CCCCNC(=O)c1ccc(cc1)n2cc(nc2)NC(=O)C3CCN(C3)C=N" # _pdbx_chem_comp_identifier.comp_id JMF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S})-1-(iminomethyl)-~{N}-[1-[4-(pent-4-ynylcarbamoyl)phenyl]imidazol-4-yl]pyrrolidine-3-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JMF _pdbx_chem_comp_synonyms.name "(3S)-1-cyano-N-[1-[4-(pent-4-ynylcarbamoyl)phenyl]imidazol-4-yl]pyrrolidine-3-carboxamide, reacted form of" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JMF "Create component" 2022-05-05 PDBE JMF "Modify descriptor" 2022-08-22 RCSB JMF "Initial release" 2022-09-14 RCSB JMF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id JMF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #